NO13G02610.1, NO13G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02610.1
Unique NameNO13G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr13:722314..723630 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:722314..723630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02610.1 vs.
Match: EWM21911.1 (actin-related protein [Nannochloropsis gaditana])

HSP 1 Score: 623.6 bits (1607), Expect = 4.600e-175
Identity = 318/445 (71.46%), Postives = 365/445 (82.02%), Query Frame = 0 
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAV----EGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPFGQHQGVVAEKMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDS--AFSSSSTSSSIPGP-QDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERFH 439
            MYCGDEVFSVVGDLGT +SRFGYAGEDLPK VFPSA+G+VV       +G RKK+  G A    S DV E A   +  +N +  LG+A IG+RRTDLELSFP+ NGHV++WDAVE IWAHAF Q++V++ AKGVP+MYALP WA+RAESQ   ELAFERF++GALYLARS MLSAFSTGR+SG+VCDCGAGSTSAVP+LDGYVL QLVGRSERGGDWLDGKVGEWL S+K  +  FG  +G + E MP  Y +FQEQRVLRDVKESCCL+PQ DSDDGA+FD+E+ND E G YELPDGT+VK DK L R+PE +M+ G+ +  + S +  S S  G   DLP +VY AVEKADVDVRKELLGNVILTG GSCFRG++ERLQ+ELTEKVPVAYKVK+VTATPLERRFSAWIGGSILASLGSFQQLWLSK EYEEMGAE A K+RFH
Sbjct:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGA----SSDV-EGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKIGLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKKRFH 440
The following BLAST results are available for this feature:
BLAST of NO13G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21911.14.600e-17571.46actin-related protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02610NO13G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02610.1NO13G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02610.1.cds1NO13G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02610.1 ID=NO13G02610.1|Name=NO13G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
ATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACGGC
CACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTTTC
CCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGAAG
GAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAGGC
CGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGACG
CGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGGAG
AACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCACGC
GTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCATGT
ACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGGAG
CTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCGGC
CATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGATT
GCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGCTA
AAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGAAA
GGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGGGC
AGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGTTC
CAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTCCC
GCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGACC
CGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTGAC
AAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGACAG
TGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGATC
TACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGCGG
AAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTCCG
TGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGTGG
CGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTAGT
GCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAGCT
GTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCTCA
AGGAGAGGTTTCACTGA
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protein sequence of NO13G02610.1

>NO13G02610.1-protein ID=NO13G02610.1-protein|Name=NO13G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAVEGGRKK
EKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPME
NGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVME
LAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVL
KQLVGRSERGGDWLDGKVGEWLASKKVTVRPFGQHQGVVAEKMPPHYRQF
QEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKID
KALRRVPESVMLPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVR
KELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFS
AWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERFH*
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mRNA from alignment at chr13:722314..723630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02610.1 ID=NO13G02610.1|Name=NO13G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp|location=Sequence derived from alignment at chr13:722314..723630+ (Nannochloropsis oceanica)
ATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACGGC
CACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTTTC
CCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGAAG
GAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAGGC
CGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGACG
CGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGGAG
AACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCACGC
GTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCATGT
ACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGGAG
CTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCGGC
CATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGATT
GCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGCTA
AAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGAAA
GGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGGGC
AGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGTTC
CAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTCCC
GCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGACC
CGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTGAC
AAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGACAG
TGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGATC
TACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGCGG
AAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTCCG
TGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGTGG
CGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTAGT
GCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAGCT
GTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCTCA
AGGAGAGGTTTCACTGA
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Coding sequence (CDS) from alignment at chr13:722314..723630+

>NO13G02610.1 ID=NO13G02610.1|Name=NO13G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr13:722314..723630+ (Nannochloropsis oceanica)
ATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACGGC
CACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTTTC
CCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGAAG
GAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAGGC
CGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGACG
CGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGGAG
AACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCACGC
GTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCATGT
ACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGGAG
CTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCGGC
CATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGATT
GCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGCTA
AAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGAAA
GGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGGGC
AGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGTTC
CAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTCCC
GCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGACC
CGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTGAC
AAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGACAG
TGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGATC
TACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGCGG
AAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTCCG
TGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGTGG
CGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTAGT
GCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAGCT
GTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCTCA
AGGAGAGGTTTCACTGA
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Synonyms
Publications