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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:720372..723694 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02600.1 vs.
Match: EWM21924.1 (uracil phosphoribosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 431.0 bits (1107), Expect = 2.700e-117 Identity = 225/269 (83.64%), Postives = 237/269 (88.10%), Query Frame = 0
Query: 1 MPSSIAATVIYKRPASPAISVSSCVEASDLPSSVYCSGHPLLQHKMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGTLGPVAGQKLSDKIAIVPILRGGLGMVDAMTEILPNAAVYHIGMFSNHKSSSLPIQYYNRLPKEKDKVADLTFVLDPLIATAGTCSATVSTLKKWGAKKIVVIGVVGSLQGLHKLTQAHPDIRVHVASIDEAISEDGHILPGIGDASERLFTAYGVGEHDDETSVHTVASAKKRKAGEKNGC 270
MPSS KRP SP SC EASDLP SV+CSGHPLL HKMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEG+LGPV GQKLSDKIAIVPILRGGLGMVDAMTEILPNAAVYH+GMFSNH+S SLPIQYYNRLPKEKDKVADLTFVLDPLIATAGTCSATVS LKKWG KKI+VIGVVG+LQGLHKLTQAHPDIRVHVA+IDEA+S DGHILPGIGDASERLF A+ VGE DDETSV + + KK K + NGC
Sbjct: 1 MPSSAT-----KRPTSP-FPAKSCQEASDLPPSVHCSGHPLLHHKMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGSLGPVEGQKLSDKIAIVPILRGGLGMVDAMTEILPNAAVYHVGMFSNHRSLSLPIQYYNRLPKEKDKVADLTFVLDPLIATAGTCSATVSILKKWGTKKIIVIGVVGALQGLHKLTQAHPDIRVHVAAIDEAVSADGHILPGIGDASERLFNAH-VGEPDDETSVLNLCATKKTKRSD-NGC 261
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02600.1 ID=NO13G02600.1|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3104bp CACCATACGTACGCTCTTTTCATTACTTTTTACTTTGTCGTCATCATTTC TGATCCCCCCCCATTCAGTGAAACCTCTCCTTGAGAGCCCTTTCGGCTCC CATTTCCTCATACTCTAGCTTGGATAGCCACAGCTGCTGAAACGAGCCTA AGGACGCTAAAATGGACCCTCCAATCCACGCACTAAACCGCCTCTCCAAC GGCGTGGCCGTCACGACCTTCACCTTGTACGCCACTGGCACTTTCTCTGT CAGTTCAAATTGCAATCGTTCTGCTGCTCCACGGAAACAGCTACCCGCTC CCGTCAAAATCACGTTTCCCAACAACTCTTTCCGCACGTCCACATCCGCC TTCTCCACCGCTGCGTACACCAACCCCGGTAGATCCTGCGGTCCTGGTAT TGATGACGACGTGGAAGAGGAGGAAAAAGCACTGTCATTCCCTGGGAGCA TGACAGATTCCGGCACCCGCCGGAGGGCCTTGTCAATTTTGACCTTGGTG CCGTCGGGGAGCTCGTATACTCCGTCCTCCGGGTCGTTATCCTCCACATC AAACATAGCCCCATCGTCACTATCTGCCTGCGGGACCAAACAACAACTCT CCTTCACATCGCGCAGCACGCGTTGTTCCTGGAACTGCCGGTAATGCGGA GGCATCTTTTCTGCCACCACCCCCTGATGCTGCCCAAACGGTCTCACCGT TACTTTTTTCGAGGCCAACCACTCCCCAACCTTTCCATCCAACCAGTCCC CGCCCCTCTCACTTCTCCCCACCAGCTGCTTTAGCACATATCCATCCAAT AACGGCACAGCACTCGTCGAGCCAGCGCCGCAATCACACACAATCCCACT CGCCCGACCGGTGGAGAACGCACTCAACATGGCCGACCGCGCCAAATACA AAGCACCCACTTCAAACCTTTCAAAAGCCAGCTCCATCACTGTTTGACTC TCGGCGCGCGTGGCCCACGTGGGCAAGGCGTACATGAAAGGAACACCCTT GGCTTCGTCCCGTACGGCTATTTGTCCAAACGCGTGGGCCCAAATCCTCT CCACTGCATCCCAATTCCGCACGTGCCCGTTCTCCATGGGAAAAGATAGT TCTAAATCCGTTCGTCGAAGTCCAATTTTCGCGTCTCCAAGTACAGCTGC AGCATTGCTACCGATCCTTCCGGCAGCGGCGGCCTCATCTACGTCCATAC TGTTCGATGCCCCTGCGTCGCCTGCCTTTTCCTTCTTCCTGCCACCCTCC ACCGCATCCACCACATGTCCTACGGCCGAGGGAAAGACAGCTTTGGGCAA GTCCTCCCCGGCATATCCAAAGCGGCTGGTGGCCGTGCCTAAATCGCCCA CCACGGAGAAGACCTCGTCCCCACAATACATGTTATTGCGTGTGATGATG ATGCCAGGAGGGGGAGGGGGGGAGGTCGCCTGTGTCGTGTTTATGATTGG AGAGAAAGGGATACACAACGAGAGTAGTTAATGATTGTGCAACCTGCGCA ATGCGTCGACAATGAAGGGCTTGTTGTCCTGATCTTGTGGGTTTTGTTTG TAGCCTCATTTAGGGTTCTATGGAGTTTTTCCCGTTCGCGCTCTCGCTCA AGCCTCGCTGGCTCGTCGCCCAAATTCAACCCGGCGTCGACTCTGAAGCC TCCATGCTTACCCTCCTACCACGCCAATTGCAGCCCTAATGTTATCGATA CCACGCCCTATACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCT CCACCTGAACCGATCCACTCACTCGTACTTAGTCGATCAAGCCCAAGGCG TCATCTCGGTCATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACG GTCATCTACAAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGT TGAAGCCAGTGACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGCTGC TGCAACACAAAATGACGCTCCTCCGGGACCGCAAGACCACCACGCGGGAC TTCCGGCACCTAATGCGAGAGCTCACTCTGTACCTAGGCTATGAAGCCAC CACTGAAATCACGCTGAAGCCACGCGTAGTGGAGGGTACTCTGGGGCCCG TGGCCGGGCAGAAGCTCTCGGACAAAATCGCCATCGTTCCAATCCTTCGA GGGGGTTTGGGAATGGTCGATGCCATGACGGAGATCTTGCCGAATGCCGC TGTGTATCACATTGGTATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTA TTCAATACTACAATCGCCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTC ACCTTCGTCCTTGACCCTCTCATTGCCACTGCCGGGACCTGTAGTGCCAC GGTCTCGACCTTGAAAAAATGGGGCGCTAAGAAGATCGTGGTGATTGGTG TGGTTGGTTCGCTGCAAGGGCTGCATAAGCTGACCCAGGCACACCCTGAT ATTCGAGTGCATGTGGCGTCGATCGACGAGGCGATTTCAGAGGACGGGCA TATCCTGCCCGGGATTGGCGATGCGAGTGAAAGGTTGTTCACTGCCTATG GAGTGGGGGAGCATGACGACGAGACCTCAGTGCACACGGTGGCCTCGGCC AAGAAGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGAGGAAGAGGGAGGA AGGGAGGAATCTGAGTGCCGGCGGGTTTGACATTTGAATAGAGGGAGGAG GGTACAAGGAAGTGAGACGGGCAGCGAGGAGGGGGAAAAATAGATACTCG GCTTTGAATGCGAGGAGGAAGGAGGGGAGAGAGGCGAGAAGGAGGGCAAA GCGACTGTATAAATGGATAGCTACACATATAAGTTTGTTCAAGAGGAGCT TTGAGTGAATTACCGTCACGGGACGCGGCGGAGCAGAGCCAGGCAGACTG ATGTGCGCTGGATACAATCGGCAAGAGGAAAAGAAAGGAAACACAGTATG AAAACCTTGATATTTCAGAACAAGTGGCCCAGGGATGGGAAGGCGCGTGC GACTACACCATCAACACTCCCTCGCGTACTGCTGCAGTTGTGACACAACC GGAGGGAGAAATAGAAACAGAACACAAGAAGAAAGACTCACCACGCACGC ACAA back to topprotein sequence of NO13G02600.1 >NO13G02600.1-protein ID=NO13G02600.1-protein|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp MPSSIAATVIYKRPASPAISVSSCVEASDLPSSVYCSGHPLLQHKMTLLR DRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGTLGPVAGQKLSDK IAIVPILRGGLGMVDAMTEILPNAAVYHIGMFSNHKSSSLPIQYYNRLPK EKDKVADLTFVLDPLIATAGTCSATVSTLKKWGAKKIVVIGVVGSLQGLH KLTQAHPDIRVHVASIDEAISEDGHILPGIGDASERLFTAYGVGEHDDET SVHTVASAKKRKAGEKNGC* back to topmRNA from alignment at chr13:720372..723694- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02600.1 ID=NO13G02600.1|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3323bp|location=Sequence derived from alignment at chr13:720372..723694- (Nannochloropsis oceanica) CACCATACGTACGCTCTTTTCATTACTTTTTACTTTGTCGTCATCATTTC
TGATCCCCCCCCATTCAGTGAAACCTCTCCTTGAGAGCCCTTTCGGCTCC
CATTTCCTCATACTCTAGCTTGGATAGCCACAGCTGCTGAAACGAGCCTA
AGGACGCTAAAATGGACCCTCCAATCCACGCACTAAACCGCCTCTCCAAC
GGCGTGGCCGTCACGACCTTCACCTTGTACGCCACTGGCACTTTCTCTGT
CAGTTCAAATTGCAATCGTTCTGCTGCTCCACGGAAACAGCTACCCGCTC
CCGTCAAAATCACGTTTCCCAACAACTCTTTCCGCACGTCCACATCCGCC
TTCTCCACCGCTGCGTACACCAACCCCGGTAGATCCTGCGGTCCTGGTAT
TGATGACGACGTGGAAGAGGAGGAAAAAGCACTGTCATTCCCTGGGAGCA
TGACAGATTCCGGCACCCGCCGGAGGGCCTTGTCAATTTTGACCTTGGTG
CCGTCGGGGAGCTCGTATACTCCGTCCTCCGGGTCGTTATCCTCCACATC
AAACATAGCCCCATCGTCACTATCTGCCTGCGGGACCAAACAACAACTCT
CCTTCACATCGCGCAGCACGCGTTGTTCCTGGAACTGCCGGTAATGCGGA
GGCATCTTTTCTGCCACCACCCCCTGATGCTGCCCAAACGGTCTCACCGT
TACTTTTTTCGAGGCCAACCACTCCCCAACCTTTCCATCCAACCAGTCCC
CGCCCCTCTCACTTCTCCCCACCAGCTGCTTTAGCACATATCCATCCAAT
AACGGCACAGCACTCGTCGAGCCAGCGCCGCAATCACACACAATCCCACT
CGCCCGACCGGTGGAGAACGCACTCAACATGGCCGACCGCGCCAAATACA
AAGCACCCACTTCAAACCTTTCAAAAGCCAGCTCCATCACTGTTTGACTC
TCGGCGCGCGTGGCCCACGTGGGCAAGGCGTACATGAAAGGAACACCCTT
GGCTTCGTCCCGTACGGCTATTTGTCCAAACGCGTGGGCCCAAATCCTCT
CCACTGCATCCCAATTCCGCACGTGCCCGTTCTCCATGGGAAAAGATAGT
TCTAAATCCGTTCGTCGAAGTCCAATTTTCGCGTCTCCAAGTACAGCTGC
AGCATTGCTACCGATCCTTCCGGCAGCGGCGGCCTCATCTACGTCCATAC
TGTTCGATGCCCCTGCGTCGCCTGCCTTTTCCTTCTTCCTGCCACCCTCC
ACCGCATCCACCACATGTCCTACGGCCGAGGGAAAGACAGCTTTGGGCAA
GTCCTCCCCGGCATATCCAAAGCGGCTGGTGGCCGTGCCTAAATCGCCCA
CCACGGAGAAGACCTCGTCCCCACAATACATGTTATTGCGTGTGATGATG
ATGCCAGGAGGGGGAGGGGGGGAGGTCGCCTGTGTCGTGTTTATGATTGG
AGAGAAAGGGATACACAACGAGAGTAGTTAATGATTGTGCAACCTGCGCA
ATGCGTCGACAATGAAGGGCTTGTTGTCCTGATCTTGTGGGTTTTGTTTG
TAGCCTCATTTAGGGTTCTATGGAGTTTTTCCCGTTCGCGCTCTCGCTCA
AGCCTCGCTGGCTCGTCGCCCAAATTCAACCCGGCGTCGACTCTGAAGCC
TCCATGCTTACCCTCCTACCACGCCAATTGCAGCCCTAATGTTATCGATA
CCACGCCCTATACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCT
CCACCTGAACCGATCCACTCACTCGTACTTAGTCGATCAAGCCCAAGGCG
TCATCTCGGTCATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACG
GTCATCTACAAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGT
TGAAGCCAGTGACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGGTAA
GTCTCCTTTTGGTTGGTGCGTATGTCCGTGCCTGGCACACAGTGCCATAT
GTATTGGTGATGGCTTCCCTCCTGATAGAAATGTTACAACTTCGGACCCT
GTCTACCGTCATTCCGCCAGCCATTACATCAATCAACAGAGACACAACAA
TTCTTCATCAGTTTAACTCCCACCATTCAAAACAAACACCCTCAACGACC
TCTCCTTCCCTTCAGCTGCTGCAACACAAAATGACGCTCCTCCGGGACCG
CAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCACTCTGT
ACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCGTAGTG
GAGGGTACTCTGGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAAATCGC
CATCGTTCCAATCCTTCGAGGGGGTTTGGGAATGGTCGATGCCATGACGG
AGATCTTGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTAACCAT
AAGTCCTCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAGGAGAA
GGATAAAGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGCCACTG
CCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAAAAATGGGGCGCTAAG
AAGATCGTGGTGATTGGTGTGGTTGGTTCGCTGCAAGGGCTGCATAAGCT
GACCCAGGCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGACGAGG
CGATTTCAGAGGACGGGCATATCCTGCCCGGGATTGGCGATGCGAGTGAA
AGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGACCTCAGT
GCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAATGGTT
GTTAGAGGAAGAGGGAGGAAGGGAGGAATCTGAGTGCCGGCGGGTTTGAC
ATTTGAATAGAGGGAGGAGGGTACAAGGAAGTGAGACGGGCAGCGAGGAG
GGGGAAAAATAGATACTCGGCTTTGAATGCGAGGAGGAAGGAGGGGAGAG
AGGCGAGAAGGAGGGCAAAGCGACTGTATAAATGGATAGCTACACATATA
AGTTTGTTCAAGAGGAGCTTTGAGTGAATTACCGTCACGGGACGCGGCGG
AGCAGAGCCAGGCAGACTGATGTGCGCTGGATACAATCGGCAAGAGGAAA
AGAAAGGAAACACAGTATGAAAACCTTGATATTTCAGAACAAGTGGCCCA
GGGATGGGAAGGCGCGTGCGACTACACCATCAACACTCCCTCGCGTACTG
CTGCAGTTGTGACACAACCGGAGGGAGAAATAGAAACAGAACACAAGAAG
AAAGACTCACCACGCACGCACAA back to topCoding sequence (CDS) from alignment at chr13:720372..723694- >NO13G02600.1 ID=NO13G02600.1|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr13:720372..723694- (Nannochloropsis oceanica) ATGCCCTCCTCCATCGCCGCTACGGTCATCTACAAGCGGCCGGCGTCGCC TGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTGACCTACCCTCCAGTG TATATTGCAGCGGCCACCCGCTGCTGCAACACAAAATGACGCTCCTCCGG GACCGCAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCAC TCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCG TAGTGGAGGGTACTCTGGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAA ATCGCCATCGTTCCAATCCTTCGAGGGGGTTTGGGAATGGTCGATGCCAT GACGGAGATCTTGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTA ACCATAAGTCCTCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAG GAGAAGGATAAAGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGC CACTGCCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAAAAATGGGGCG CTAAGAAGATCGTGGTGATTGGTGTGGTTGGTTCGCTGCAAGGGCTGCAT AAGCTGACCCAGGCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGA CGAGGCGATTTCAGAGGACGGGCATATCCTGCCCGGGATTGGCGATGCGA GTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGACC TCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAA TGGTTGTTAG back to top
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