NO13G02600.1, NO13G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02600.1
Unique NameNO13G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3104
Alignment locationchr13:720372..723694 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:720372..723694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02600.1 vs.
Match: EWM21924.1 (uracil phosphoribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 431.0 bits (1107), Expect = 2.700e-117
Identity = 225/269 (83.64%), Postives = 237/269 (88.10%), Query Frame = 0
Query:    1 MPSSIAATVIYKRPASPAISVSSCVEASDLPSSVYCSGHPLLQHKMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGTLGPVAGQKLSDKIAIVPILRGGLGMVDAMTEILPNAAVYHIGMFSNHKSSSLPIQYYNRLPKEKDKVADLTFVLDPLIATAGTCSATVSTLKKWGAKKIVVIGVVGSLQGLHKLTQAHPDIRVHVASIDEAISEDGHILPGIGDASERLFTAYGVGEHDDETSVHTVASAKKRKAGEKNGC 270
            MPSS       KRP SP     SC EASDLP SV+CSGHPLL HKMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEG+LGPV GQKLSDKIAIVPILRGGLGMVDAMTEILPNAAVYH+GMFSNH+S SLPIQYYNRLPKEKDKVADLTFVLDPLIATAGTCSATVS LKKWG KKI+VIGVVG+LQGLHKLTQAHPDIRVHVA+IDEA+S DGHILPGIGDASERLF A+ VGE DDETSV  + + KK K  + NGC
Sbjct:    1 MPSSAT-----KRPTSP-FPAKSCQEASDLPPSVHCSGHPLLHHKMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGSLGPVEGQKLSDKIAIVPILRGGLGMVDAMTEILPNAAVYHVGMFSNHRSLSLPIQYYNRLPKEKDKVADLTFVLDPLIATAGTCSATVSILKKWGTKKIIVIGVVGALQGLHKLTQAHPDIRVHVAAIDEAVSADGHILPGIGDASERLFNAH-VGEPDDETSVLNLCATKKTKRSD-NGC 261          
The following BLAST results are available for this feature:
BLAST of NO13G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21924.12.700e-11783.64uracil phosphoribosyltransferase [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02600NO13G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02600.1NO13G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02600.1.cds1NO13G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02600.1.cds2NO13G02600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02600.1 ID=NO13G02600.1|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3104bp
CACCATACGTACGCTCTTTTCATTACTTTTTACTTTGTCGTCATCATTTC
TGATCCCCCCCCATTCAGTGAAACCTCTCCTTGAGAGCCCTTTCGGCTCC
CATTTCCTCATACTCTAGCTTGGATAGCCACAGCTGCTGAAACGAGCCTA
AGGACGCTAAAATGGACCCTCCAATCCACGCACTAAACCGCCTCTCCAAC
GGCGTGGCCGTCACGACCTTCACCTTGTACGCCACTGGCACTTTCTCTGT
CAGTTCAAATTGCAATCGTTCTGCTGCTCCACGGAAACAGCTACCCGCTC
CCGTCAAAATCACGTTTCCCAACAACTCTTTCCGCACGTCCACATCCGCC
TTCTCCACCGCTGCGTACACCAACCCCGGTAGATCCTGCGGTCCTGGTAT
TGATGACGACGTGGAAGAGGAGGAAAAAGCACTGTCATTCCCTGGGAGCA
TGACAGATTCCGGCACCCGCCGGAGGGCCTTGTCAATTTTGACCTTGGTG
CCGTCGGGGAGCTCGTATACTCCGTCCTCCGGGTCGTTATCCTCCACATC
AAACATAGCCCCATCGTCACTATCTGCCTGCGGGACCAAACAACAACTCT
CCTTCACATCGCGCAGCACGCGTTGTTCCTGGAACTGCCGGTAATGCGGA
GGCATCTTTTCTGCCACCACCCCCTGATGCTGCCCAAACGGTCTCACCGT
TACTTTTTTCGAGGCCAACCACTCCCCAACCTTTCCATCCAACCAGTCCC
CGCCCCTCTCACTTCTCCCCACCAGCTGCTTTAGCACATATCCATCCAAT
AACGGCACAGCACTCGTCGAGCCAGCGCCGCAATCACACACAATCCCACT
CGCCCGACCGGTGGAGAACGCACTCAACATGGCCGACCGCGCCAAATACA
AAGCACCCACTTCAAACCTTTCAAAAGCCAGCTCCATCACTGTTTGACTC
TCGGCGCGCGTGGCCCACGTGGGCAAGGCGTACATGAAAGGAACACCCTT
GGCTTCGTCCCGTACGGCTATTTGTCCAAACGCGTGGGCCCAAATCCTCT
CCACTGCATCCCAATTCCGCACGTGCCCGTTCTCCATGGGAAAAGATAGT
TCTAAATCCGTTCGTCGAAGTCCAATTTTCGCGTCTCCAAGTACAGCTGC
AGCATTGCTACCGATCCTTCCGGCAGCGGCGGCCTCATCTACGTCCATAC
TGTTCGATGCCCCTGCGTCGCCTGCCTTTTCCTTCTTCCTGCCACCCTCC
ACCGCATCCACCACATGTCCTACGGCCGAGGGAAAGACAGCTTTGGGCAA
GTCCTCCCCGGCATATCCAAAGCGGCTGGTGGCCGTGCCTAAATCGCCCA
CCACGGAGAAGACCTCGTCCCCACAATACATGTTATTGCGTGTGATGATG
ATGCCAGGAGGGGGAGGGGGGGAGGTCGCCTGTGTCGTGTTTATGATTGG
AGAGAAAGGGATACACAACGAGAGTAGTTAATGATTGTGCAACCTGCGCA
ATGCGTCGACAATGAAGGGCTTGTTGTCCTGATCTTGTGGGTTTTGTTTG
TAGCCTCATTTAGGGTTCTATGGAGTTTTTCCCGTTCGCGCTCTCGCTCA
AGCCTCGCTGGCTCGTCGCCCAAATTCAACCCGGCGTCGACTCTGAAGCC
TCCATGCTTACCCTCCTACCACGCCAATTGCAGCCCTAATGTTATCGATA
CCACGCCCTATACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCT
CCACCTGAACCGATCCACTCACTCGTACTTAGTCGATCAAGCCCAAGGCG
TCATCTCGGTCATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACG
GTCATCTACAAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGT
TGAAGCCAGTGACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGCTGC
TGCAACACAAAATGACGCTCCTCCGGGACCGCAAGACCACCACGCGGGAC
TTCCGGCACCTAATGCGAGAGCTCACTCTGTACCTAGGCTATGAAGCCAC
CACTGAAATCACGCTGAAGCCACGCGTAGTGGAGGGTACTCTGGGGCCCG
TGGCCGGGCAGAAGCTCTCGGACAAAATCGCCATCGTTCCAATCCTTCGA
GGGGGTTTGGGAATGGTCGATGCCATGACGGAGATCTTGCCGAATGCCGC
TGTGTATCACATTGGTATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTA
TTCAATACTACAATCGCCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTC
ACCTTCGTCCTTGACCCTCTCATTGCCACTGCCGGGACCTGTAGTGCCAC
GGTCTCGACCTTGAAAAAATGGGGCGCTAAGAAGATCGTGGTGATTGGTG
TGGTTGGTTCGCTGCAAGGGCTGCATAAGCTGACCCAGGCACACCCTGAT
ATTCGAGTGCATGTGGCGTCGATCGACGAGGCGATTTCAGAGGACGGGCA
TATCCTGCCCGGGATTGGCGATGCGAGTGAAAGGTTGTTCACTGCCTATG
GAGTGGGGGAGCATGACGACGAGACCTCAGTGCACACGGTGGCCTCGGCC
AAGAAGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGAGGAAGAGGGAGGA
AGGGAGGAATCTGAGTGCCGGCGGGTTTGACATTTGAATAGAGGGAGGAG
GGTACAAGGAAGTGAGACGGGCAGCGAGGAGGGGGAAAAATAGATACTCG
GCTTTGAATGCGAGGAGGAAGGAGGGGAGAGAGGCGAGAAGGAGGGCAAA
GCGACTGTATAAATGGATAGCTACACATATAAGTTTGTTCAAGAGGAGCT
TTGAGTGAATTACCGTCACGGGACGCGGCGGAGCAGAGCCAGGCAGACTG
ATGTGCGCTGGATACAATCGGCAAGAGGAAAAGAAAGGAAACACAGTATG
AAAACCTTGATATTTCAGAACAAGTGGCCCAGGGATGGGAAGGCGCGTGC
GACTACACCATCAACACTCCCTCGCGTACTGCTGCAGTTGTGACACAACC
GGAGGGAGAAATAGAAACAGAACACAAGAAGAAAGACTCACCACGCACGC
ACAA
back to top

protein sequence of NO13G02600.1

>NO13G02600.1-protein ID=NO13G02600.1-protein|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MPSSIAATVIYKRPASPAISVSSCVEASDLPSSVYCSGHPLLQHKMTLLR
DRKTTTRDFRHLMRELTLYLGYEATTEITLKPRVVEGTLGPVAGQKLSDK
IAIVPILRGGLGMVDAMTEILPNAAVYHIGMFSNHKSSSLPIQYYNRLPK
EKDKVADLTFVLDPLIATAGTCSATVSTLKKWGAKKIVVIGVVGSLQGLH
KLTQAHPDIRVHVASIDEAISEDGHILPGIGDASERLFTAYGVGEHDDET
SVHTVASAKKRKAGEKNGC*
back to top

mRNA from alignment at chr13:720372..723694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02600.1 ID=NO13G02600.1|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3323bp|location=Sequence derived from alignment at chr13:720372..723694- (Nannochloropsis oceanica)
CACCATACGTACGCTCTTTTCATTACTTTTTACTTTGTCGTCATCATTTC TGATCCCCCCCCATTCAGTGAAACCTCTCCTTGAGAGCCCTTTCGGCTCC CATTTCCTCATACTCTAGCTTGGATAGCCACAGCTGCTGAAACGAGCCTA AGGACGCTAAAATGGACCCTCCAATCCACGCACTAAACCGCCTCTCCAAC GGCGTGGCCGTCACGACCTTCACCTTGTACGCCACTGGCACTTTCTCTGT CAGTTCAAATTGCAATCGTTCTGCTGCTCCACGGAAACAGCTACCCGCTC CCGTCAAAATCACGTTTCCCAACAACTCTTTCCGCACGTCCACATCCGCC TTCTCCACCGCTGCGTACACCAACCCCGGTAGATCCTGCGGTCCTGGTAT TGATGACGACGTGGAAGAGGAGGAAAAAGCACTGTCATTCCCTGGGAGCA TGACAGATTCCGGCACCCGCCGGAGGGCCTTGTCAATTTTGACCTTGGTG CCGTCGGGGAGCTCGTATACTCCGTCCTCCGGGTCGTTATCCTCCACATC AAACATAGCCCCATCGTCACTATCTGCCTGCGGGACCAAACAACAACTCT CCTTCACATCGCGCAGCACGCGTTGTTCCTGGAACTGCCGGTAATGCGGA GGCATCTTTTCTGCCACCACCCCCTGATGCTGCCCAAACGGTCTCACCGT TACTTTTTTCGAGGCCAACCACTCCCCAACCTTTCCATCCAACCAGTCCC CGCCCCTCTCACTTCTCCCCACCAGCTGCTTTAGCACATATCCATCCAAT AACGGCACAGCACTCGTCGAGCCAGCGCCGCAATCACACACAATCCCACT CGCCCGACCGGTGGAGAACGCACTCAACATGGCCGACCGCGCCAAATACA AAGCACCCACTTCAAACCTTTCAAAAGCCAGCTCCATCACTGTTTGACTC TCGGCGCGCGTGGCCCACGTGGGCAAGGCGTACATGAAAGGAACACCCTT GGCTTCGTCCCGTACGGCTATTTGTCCAAACGCGTGGGCCCAAATCCTCT CCACTGCATCCCAATTCCGCACGTGCCCGTTCTCCATGGGAAAAGATAGT TCTAAATCCGTTCGTCGAAGTCCAATTTTCGCGTCTCCAAGTACAGCTGC AGCATTGCTACCGATCCTTCCGGCAGCGGCGGCCTCATCTACGTCCATAC TGTTCGATGCCCCTGCGTCGCCTGCCTTTTCCTTCTTCCTGCCACCCTCC ACCGCATCCACCACATGTCCTACGGCCGAGGGAAAGACAGCTTTGGGCAA GTCCTCCCCGGCATATCCAAAGCGGCTGGTGGCCGTGCCTAAATCGCCCA CCACGGAGAAGACCTCGTCCCCACAATACATGTTATTGCGTGTGATGATG ATGCCAGGAGGGGGAGGGGGGGAGGTCGCCTGTGTCGTGTTTATGATTGG AGAGAAAGGGATACACAACGAGAGTAGTTAATGATTGTGCAACCTGCGCA ATGCGTCGACAATGAAGGGCTTGTTGTCCTGATCTTGTGGGTTTTGTTTG TAGCCTCATTTAGGGTTCTATGGAGTTTTTCCCGTTCGCGCTCTCGCTCA AGCCTCGCTGGCTCGTCGCCCAAATTCAACCCGGCGTCGACTCTGAAGCC TCCATGCTTACCCTCCTACCACGCCAATTGCAGCCCTAATGTTATCGATA CCACGCCCTATACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCT CCACCTGAACCGATCCACTCACTCGTACTTAGTCGATCAAGCCCAAGGCG TCATCTCGGTCATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACG GTCATCTACAAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGT TGAAGCCAGTGACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGGTAA GTCTCCTTTTGGTTGGTGCGTATGTCCGTGCCTGGCACACAGTGCCATAT GTATTGGTGATGGCTTCCCTCCTGATAGAAATGTTACAACTTCGGACCCT GTCTACCGTCATTCCGCCAGCCATTACATCAATCAACAGAGACACAACAA TTCTTCATCAGTTTAACTCCCACCATTCAAAACAAACACCCTCAACGACC TCTCCTTCCCTTCAGCTGCTGCAACACAAAATGACGCTCCTCCGGGACCG CAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCACTCTGT ACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCGTAGTG GAGGGTACTCTGGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAAATCGC CATCGTTCCAATCCTTCGAGGGGGTTTGGGAATGGTCGATGCCATGACGG AGATCTTGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTAACCAT AAGTCCTCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAGGAGAA GGATAAAGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGCCACTG CCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAAAAATGGGGCGCTAAG AAGATCGTGGTGATTGGTGTGGTTGGTTCGCTGCAAGGGCTGCATAAGCT GACCCAGGCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGACGAGG CGATTTCAGAGGACGGGCATATCCTGCCCGGGATTGGCGATGCGAGTGAA AGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGACCTCAGT GCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAATGGTT GTTAGAGGAAGAGGGAGGAAGGGAGGAATCTGAGTGCCGGCGGGTTTGAC ATTTGAATAGAGGGAGGAGGGTACAAGGAAGTGAGACGGGCAGCGAGGAG GGGGAAAAATAGATACTCGGCTTTGAATGCGAGGAGGAAGGAGGGGAGAG AGGCGAGAAGGAGGGCAAAGCGACTGTATAAATGGATAGCTACACATATA AGTTTGTTCAAGAGGAGCTTTGAGTGAATTACCGTCACGGGACGCGGCGG AGCAGAGCCAGGCAGACTGATGTGCGCTGGATACAATCGGCAAGAGGAAA AGAAAGGAAACACAGTATGAAAACCTTGATATTTCAGAACAAGTGGCCCA GGGATGGGAAGGCGCGTGCGACTACACCATCAACACTCCCTCGCGTACTG CTGCAGTTGTGACACAACCGGAGGGAGAAATAGAAACAGAACACAAGAAG AAAGACTCACCACGCACGCACAA
back to top

Coding sequence (CDS) from alignment at chr13:720372..723694-

>NO13G02600.1 ID=NO13G02600.1|Name=NO13G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr13:720372..723694- (Nannochloropsis oceanica)
ATGCCCTCCTCCATCGCCGCTACGGTCATCTACAAGCGGCCGGCGTCGCC
TGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTGACCTACCCTCCAGTG
TATATTGCAGCGGCCACCCGCTGCTGCAACACAAAATGACGCTCCTCCGG
GACCGCAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCAC
TCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCG
TAGTGGAGGGTACTCTGGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAA
ATCGCCATCGTTCCAATCCTTCGAGGGGGTTTGGGAATGGTCGATGCCAT
GACGGAGATCTTGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTA
ACCATAAGTCCTCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAG
GAGAAGGATAAAGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGC
CACTGCCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAAAAATGGGGCG
CTAAGAAGATCGTGGTGATTGGTGTGGTTGGTTCGCTGCAAGGGCTGCAT
AAGCTGACCCAGGCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGA
CGAGGCGATTTCAGAGGACGGGCATATCCTGCCCGGGATTGGCGATGCGA
GTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGACC
TCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAA
TGGTTGTTAG
back to top
Synonyms
Publications