NO13G02560.1, NO13G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02560.1
Unique NameNO13G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr13:711276..712402 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:711276..712402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02560.1 vs.
Match: EWM21917.1 (Nicotinamide N-methyltransferase, putative [Nannochloropsis gaditana])

HSP 1 Score: 295.8 bits (756), Expect = 1.300e-76
Identity = 140/220 (63.64%), Postives = 175/220 (79.55%), Query Frame = 0
Query:    4 EDTAIFVDICDQQLVLHQSRKSFNCGSTLWSAGLVLARYLEQERSMFDKGKLTLRVLELGAGLGLAGIVCALKGGCREVVLTDLASVLPYLQKNARFIPG-----------VRVQEFPWGEPPEEYDLSAPYDLVLAADCIYDVAQVAPFLHALSAVAGPKTTILIGNEERDKVLQAHFVATLGEHFTVKSIKRKKLCGLEGYHELVQVWACKKKRCKGE 213
            E+T + +DIC   LVLHQSR+S+NCGSTLWSAGLVLARYLEQE+ +F+K K  LRVLELGAGLGLAGIVCAL+  C +V LTDL SVLPYLQKNA++IP            ++V+E+ WG+ PE+  L  PYDL+L ADCIYD+AQV PFL +LSAV+GP++TIL+GNEERDK LQ HFV  LG+ F++K IKRK+L  LEG+HEL++VW C+++R KGE
Sbjct:   40 EETTVTLDICHHTLVLHQSRRSYNCGSTLWSAGLVLARYLEQEKGLFNKSKHCLRVLELGAGLGLAGIVCALQENCAQVTLTDLGSVLPYLQKNAQYIPSMVLQDGKREIDLQVKEYVWGQAPEDCGLQPPYDLILGADCIYDIAQVEPFLQSLSAVSGPRSTILLGNEERDKALQEHFVKELGKLFSIKPIKRKRLSVLEGFHELIEVWVCRRRRYKGE 259          
The following BLAST results are available for this feature:
BLAST of NO13G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21917.11.300e-7663.64Nicotinamide N-methyltransferase, putative [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02560NO13G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02560.1NO13G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02560.1.cds1NO13G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02560.1.cds2NO13G02560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02560.1.cds3NO13G02560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02560.1.cds4NO13G02560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02560.1 ID=NO13G02560.1|Name=NO13G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGGACCCGGAGGACACCGCCATTTTTGTCGACATATGCGACCAGCAGCT
CGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGGTTCTACGCTATGGA
GTGCAGGGTTGGTCCTAGCACGATACCTAGAGCAAGAACGGAGTATGTTT
GACAAGGGCAAACTCACGCTGCGTGTCCTTGAGCTCGGAGCCGGCTTGGG
CCTCGCGGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGAGAAGTCGTCT
TGACAGACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAATGCTCGCTTC
ATCCCAGGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGCCTCCAGAGGA
GTATGACTTAAGCGCCCCATATGATTTGGTTTTAGCGGCGGATTGCATTT
ATGACGTGGCGCAGGTGGCACCCTTCCTTCATGCACTCAGTGCCGTTGCG
GGGCCTAAAACCACCATACTGATTGGTAATGAGGAAAGAGATAAGGTCCT
ACAGGCTCATTTTGTGGCAACGCTGGGAGAACATTTTACGGTCAAATCGA
TCAAACGGAAGAAACTCTGTGGGTTGGAAGGATACCATGAGCTGGTGCAG
GTATGGGCGTGCAAAAAGAAGCGATGCAAGGGCGAATTGAGTGGGTCACA
GCCGCAGTCACTGCCGGATGGAAGTGCAAATGAAGAAACTAGTGATGAAG
AGGAGAAAAAGAGTAAAATGGTGGCAGAGGGGGAGGCTGCAGCAGATGAA
GGCGGGAAATGA
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protein sequence of NO13G02560.1

>NO13G02560.1-protein ID=NO13G02560.1-protein|Name=NO13G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MDPEDTAIFVDICDQQLVLHQSRKSFNCGSTLWSAGLVLARYLEQERSMF
DKGKLTLRVLELGAGLGLAGIVCALKGGCREVVLTDLASVLPYLQKNARF
IPGVRVQEFPWGEPPEEYDLSAPYDLVLAADCIYDVAQVAPFLHALSAVA
GPKTTILIGNEERDKVLQAHFVATLGEHFTVKSIKRKKLCGLEGYHELVQ
VWACKKKRCKGELSGSQPQSLPDGSANEETSDEEEKKSKMVAEGEAAADE
GGK*
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mRNA from alignment at chr13:711276..712402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02560.1 ID=NO13G02560.1|Name=NO13G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp|location=Sequence derived from alignment at chr13:711276..712402+ (Nannochloropsis oceanica)
ATGGACCCGGAGGACACCGCCATTTTTGTCGACATATGCGACCAGCAGCT CGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGGTTCTACGCTATGGA GTGCAGGGTTGGTCCTAGCACGGTTAGTCCAAAGCAAGGAGGGACCTACT TGGAAACTATTTAAAAACCCATTTTCGGTCGTATAGACTCCCCCCCAAAA AAAAACTCACTAGCCTCTTCACACCATCAGATACCTAGAGCAAGAACGGA GTATGTTTGACAAGGGCAAACTCACGCTGCGTGTCCTTGAGCTCGGAGGT AAGTGGAAATGCCACGCGTGTGTGCCGCTTCGGTCATGCCGATCTCAGGC CACACACACCCCTCTCCCCCCCCTTTTCCCCGCAGCCGGCTTGGGCCTCG CGGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGAGAAGTCGTCTTGACA GACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAATGCTCGCTTCATCCC AGGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGCCTCCAGAGGAGTATG ACTTAAGCGCCCCATATGATTTGGTTTTAGCGGCGGATTGCATTTATGAC GTGGCGCAGGTGGCACCCTTCCTTCATGCACTCAGGTGAGTGAGTGAGCA CTAGGTTATTGAGTTGAATCGTGGATACTTGGCCTTGGTTTGACTTGTCG TTCAACTGACCGCGATGGACTATCAAGGGGCTCCCTACCTTCAATTTTCA GCTCCTCTGGATCCTCTTCTTATTTTGGTGTTTCCCTCCCCACCTGAACG AACAGTGCCGTTGCGGGGCCTAAAACCACCATACTGATTGGTAATGAGGA AAGAGATAAGGTCCTACAGGCTCATTTTGTGGCAACGCTGGGAGAACATT TTACGGTCAAATCGATCAAACGGAAGAAACTCTGTGGGTTGGAAGGATAC CATGAGCTGGTGCAGGTATGGGCGTGCAAAAAGAAGCGATGCAAGGGCGA ATTGAGTGGGTCACAGCCGCAGTCACTGCCGGATGGAAGTGCAAATGAAG AAACTAGTGATGAAGAGGAGAAAAAGAGTAAAATGGTGGCAGAGGGGGAG GCTGCAGCAGATGAAGGCGGGAAATGA
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Coding sequence (CDS) from alignment at chr13:711276..712402+

>NO13G02560.1 ID=NO13G02560.1|Name=NO13G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr13:711276..712402+ (Nannochloropsis oceanica)
ATGGACCCGGAGGACACCGCCATTTTTGTCGACATATGCGACCAGCAGCT
CGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGGTTCTACGCTATGGA
GTGCAGGGTTGGTCCTAGCACGATACCTAGAGCAAGAACGGAGTATGTTT
GACAAGGGCAAACTCACGCTGCGTGTCCTTGAGCTCGGAGCCGGCTTGGG
CCTCGCGGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGAGAAGTCGTCT
TGACAGACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAATGCTCGCTTC
ATCCCAGGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGCCTCCAGAGGA
GTATGACTTAAGCGCCCCATATGATTTGGTTTTAGCGGCGGATTGCATTT
ATGACGTGGCGCAGGTGGCACCCTTCCTTCATGCACTCAGTGCCGTTGCG
GGGCCTAAAACCACCATACTGATTGGTAATGAGGAAAGAGATAAGGTCCT
ACAGGCTCATTTTGTGGCAACGCTGGGAGAACATTTTACGGTCAAATCGA
TCAAACGGAAGAAACTCTGTGGGTTGGAAGGATACCATGAGCTGGTGCAG
GTATGGGCGTGCAAAAAGAAGCGATGCAAGGGCGAATTGAGTGGGTCACA
GCCGCAGTCACTGCCGGATGGAAGTGCAAATGAAGAAACTAGTGATGAAG
AGGAGAAAAAGAGTAAAATGGTGGCAGAGGGGGAGGCTGCAGCAGATGAA
GGCGGGAAATGA
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Synonyms
Publications