NO13G02540.1, NO13G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02540.1
Unique NameNO13G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1365
Alignment locationchr13:706885..708418 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:706885..708418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02540.1 vs.
Match: EWM21925.1 (hypothetical protein Naga_100070g14 [Nannochloropsis gaditana])

HSP 1 Score: 262.3 bits (669), Expect = 1.300e-66
Identity = 124/213 (58.22%), Postives = 150/213 (70.42%), Query Frame = 0 
Query:    7 LLCLLLAGVVEGRRHQGLRGSAPLNESPEDGLPPDHELPDTVNVDYPFPYMKGHPVDNCLTMMGTDS-CGKAAADSFCHFQKCEQAVSFVESQGNRGPTWVAGDGAVRETGGGSFDKITCQCSVPESSTPGASDANQIDYNNPEILGHRLDFCLTKERLNCGKPTADAFCESFGNSGSTRFVEDPAPPRNATWFIGDHTLNEAGDRHSFQSIT 219
            LL LL+  +  G +      +   +    DG+P   E P TVNVDYPFPY+ GHP+D+CL+++GT   CG+ AAD FC FQ CE AVSF ES  +RGPTW+AGD  +R+ GG SFD ITCQCSVP S  PG+ + NQI Y +P IL H +DFCL K  + CGKP ADAFCESFGNSGSTRFVEDP P    TW IGDH+++EA DRHSF+SIT
Sbjct:   23 LLFLLVQPIYGGLQRHMRDAAFDTSALVVDGIPSGQEPPATVNVDYPFPYINGHPIDSCLSVLGTSGDCGRMAADFFCRFQNCEAAVSFQESSSDRGPTWIAGDETIRDAGGKSFDNITCQCSVPNSIAPGSINGNQIIYESPRILNHPVDFCLEKNNVACGKPAADAFCESFGNSGSTRFVEDPRPTL-TTWLIGDHSVSEAPDRHSFRSIT 234
The following BLAST results are available for this feature:
BLAST of NO13G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21925.11.300e-6658.22hypothetical protein Naga_100070g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02540NO13G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02540.1NO13G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02540.1.cds1NO13G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02540.1.cds2NO13G02540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02540.1 ID=NO13G02540.1|Name=NO13G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
AACACAGCGCCTCTGCCTTGCTCGTCAGGCAAGTATTCCCCTTGCTTGAC
TGCTCCCAATAGTCTCGGTTCCGGCCTCGAGGCGGGATCACATCTCGTCA
GCAGCAACCAGAAGTGAGTTGCAGGGTGGCACGCAGGACCAAGACAAATT
CAGCCAGCTAAGGGCAACCACAGGTCTAGAATTACAAGTTTAGTTGAGCA
ACTCCTGTACCGAATTTTAAGTAATGGCACCTACATTTTTATTGCTTTGC
TTGCTATTGGCAGGAGTTGTAGAGGGGCGGCGGCATCAAGGTTTGCGGGG
TTCTGCTCCCCTCAACGAGTCACCCGAGGATGGTCTGCCTCCCGACCATG
AACTCCCAGACACTGTCAATGTGGACTACCCCTTTCCTTACATGAAAGGC
CATCCGGTGGATAACTGCTTGACCATGATGGGCACCGACAGCTGCGGCAA
GGCCGCCGCAGACTCCTTTTGCCACTTTCAAAAATGTGAACAGGCCGTGT
CATTTGTAGAGAGTCAGGGCAATCGGGGACCCACCTGGGTTGCGGGTGAT
GGTGCAGTCCGGGAGACTGGAGGGGGGTCTTTTGACAAGATAACTTGTCA
GTGCTCCGTTCCTGAGTCATCTACACCGGGCGCGTCCGACGCGAACCAAA
TTGATTACAACAACCCAGAAATCCTTGGCCATCGCCTGGATTTTTGTTTA
ACGAAGGAAAGACTTAATTGTGGGAAGCCAACCGCTGATGCCTTTTGTGA
GTCTTTCGGCAACAGTGGCTCCACGCGGTTCGTAGAGGATCCCGCGCCCC
CCCGGAATGCGACTTGGTTTATTGGCGATCATACCCTGAATGAGGCTGGA
GATCGGCATTCGTTCCAGAGTATCACATGTGTATAGCCGCGTCGAGACCA
GCCGCCTACCCTCCCGGAACGACGTTGATGTCGCCTTTTGTATTAGCAGC
AAAACCAGTATAAAAATCAATATGTGACAGTAGAACAATACCTTGCCTGA
AGAACAAGCTGATAGTAAGATTAGGGGCCAGCGATCTAGACATTTCTTTT
GGAGGTGGGATTGAAGGATACGACATATATGTAGAAGAAATGTGTGCAAG
AGGGAAACACAGAAAGGACATCATTAAGTTGGATCCTTTTTTACCCCTGC
CAAAACGACAACCACGAGACAAATAGTCGATTGGAAGGAACAAGGGAGAG
AAAGGATAGGAAGAAAGGCAACCAGAAGGAGGAGAATATCCTGATTAGAA
ACATGCCCAGCAGTCAGCATCGGTAAGATTGAAACAAAGCGATGGTAAAG
CAGAGAGCAATCACAGAAATCATCAAAGGTGAAAATGAAAACACTTATCG
AATGAGCAGCGACCG
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protein sequence of NO13G02540.1

>NO13G02540.1-protein ID=NO13G02540.1-protein|Name=NO13G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MAPTFLLLCLLLAGVVEGRRHQGLRGSAPLNESPEDGLPPDHELPDTVNV
DYPFPYMKGHPVDNCLTMMGTDSCGKAAADSFCHFQKCEQAVSFVESQGN
RGPTWVAGDGAVRETGGGSFDKITCQCSVPESSTPGASDANQIDYNNPEI
LGHRLDFCLTKERLNCGKPTADAFCESFGNSGSTRFVEDPAPPRNATWFI
GDHTLNEAGDRHSFQSITCV*
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mRNA from alignment at chr13:706885..708418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02540.1 ID=NO13G02540.1|Name=NO13G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at chr13:706885..708418- (Nannochloropsis oceanica)
AACACAGCGCCTCTGCCTTGCTCGTCAGGCAAGTATTCCCCTTGCTTGAC
TGCTCCCAATAGTCTCGGTTCCGGCCTCGAGGCGGGATCACATCTCGTCA
GCAGCAACCAGAAGTGAGTTGCAGGGTGGCACGCAGGACCAAGACAAATT
CAGCCAGCTAAGGGCAACCACAGGTCTAGAATTACAAGTTTAGTTGAGCA
ACTCCTGTACCGAATTTTAAGTAATGGCACCTACATTTTTATTGCTTTGC
TTGCTATTGGCAGGAGTTGTAGAGGGGCGGCGGCATCAAGGTTTGCGGGG
TTCTGCTCCCCTCAACGAGTCACCCGAGGATGGTCTGCCTCCCGACCATG
AACTCCCAGACACTGTCAATGTGGACTACCCCTTTCCTTACATGAAAGGC
CATCCGGTGGATAACTGCTTGACCATGATGGGCACCGACAGCTGCGGCAA
GGCCGCCGCAGACTCCTTTTGCCACTTTCAAAAATGTGAACAGGCCGTGT
CATTTGTAGAGAGTCAGGGCAATCGGGGACCCACCTGGGTTGCGGGTGAT
GGTGCAGTCCGGGAGACTGGAGGGGGGTCTTTTGACAAGATAACTTGTCA
GTGCTCCGTTCCTGAGTCATCTACACCGGGCGCGTCCGACGCGAACCAAA
TTGATTACAACAACCCAGAAATCCTTGGCCATCGCCTGGATTTTTGTTTA
ACGAAGGAAAGACTTAATTGTGGGAAGCCAACCGCTGATGCCTTTTGTGA
GTCTTTCGGCAACAGTGGCTCCACGCGGTTCGTAGAGGATCCCGCGCCCC
CCCGGAATGCGACTTGGTTTATTGGCGATCATACCCTGAATGAGGCTGGA
GATCGGCATTCGTTCCAGTAAGTGCATAGAGATAATGGGAATGAGTGTGT
GTGTGGTATGATTGTTGTGTGACCTCACCATTTCTGTCTCGTTTTTATCC
CCTAGGTCAAGTAATTTTTTATCCAAATCCAGTTTCTCATTTCGACTCAT
TTTCCTCACTCCTCCCTCCATCTTCACCCTCAACAGGAGTATCACATGTG
TATAGCCGCGTCGAGACCAGCCGCCTACCCTCCCGGAACGACGTTGATGT
CGCCTTTTGTATTAGCAGCAAAACCAGTATAAAAATCAATATGTGACAGT
AGAACAATACCTTGCCTGAAGAACAAGCTGATAGTAAGATTAGGGGCCAG
CGATCTAGACATTTCTTTTGGAGGTGGGATTGAAGGATACGACATATATG
TAGAAGAAATGTGTGCAAGAGGGAAACACAGAAAGGACATCATTAAGTTG
GATCCTTTTTTACCCCTGCCAAAACGACAACCACGAGACAAATAGTCGAT
TGGAAGGAACAAGGGAGAGAAAGGATAGGAAGAAAGGCAACCAGAAGGAG
GAGAATATCCTGATTAGAAACATGCCCAGCAGTCAGCATCGGTAAGATTG
AAACAAAGCGATGGTAAAGCAGAGAGCAATCACAGAAATCATCAAAGGTG
AAAATGAAAACACTTATCGAATGAGCAGCGACCG
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Coding sequence (CDS) from alignment at chr13:706885..708418-

>NO13G02540.1 ID=NO13G02540.1|Name=NO13G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr13:706885..708418- (Nannochloropsis oceanica)
ATGGCACCTACATTTTTATTGCTTTGCTTGCTATTGGCAGGAGTTGTAGA
GGGGCGGCGGCATCAAGGTTTGCGGGGTTCTGCTCCCCTCAACGAGTCAC
CCGAGGATGGTCTGCCTCCCGACCATGAACTCCCAGACACTGTCAATGTG
GACTACCCCTTTCCTTACATGAAAGGCCATCCGGTGGATAACTGCTTGAC
CATGATGGGCACCGACAGCTGCGGCAAGGCCGCCGCAGACTCCTTTTGCC
ACTTTCAAAAATGTGAACAGGCCGTGTCATTTGTAGAGAGTCAGGGCAAT
CGGGGACCCACCTGGGTTGCGGGTGATGGTGCAGTCCGGGAGACTGGAGG
GGGGTCTTTTGACAAGATAACTTGTCAGTGCTCCGTTCCTGAGTCATCTA
CACCGGGCGCGTCCGACGCGAACCAAATTGATTACAACAACCCAGAAATC
CTTGGCCATCGCCTGGATTTTTGTTTAACGAAGGAAAGACTTAATTGTGG
GAAGCCAACCGCTGATGCCTTTTGTGAGTCTTTCGGCAACAGTGGCTCCA
CGCGGTTCGTAGAGGATCCCGCGCCCCCCCGGAATGCGACTTGGTTTATT
GGCGATCATACCCTGAATGAGGCTGGAGATCGGCATTCGTTCCAGAGTAT
CACATGTGTATAG
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Synonyms
Publications