NO13G02500.1, NO13G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02500.1
Unique NameNO13G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr13:696673..698857 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:696673..698857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02500.1 vs.
Match: EWM21903.1 (glutamine-trna ligase [Nannochloropsis gaditana])

HSP 1 Score: 1098.2 bits (2839), Expect = 0.000e+0
Identity = 541/665 (81.35%), Postives = 595/665 (89.47%), Query Frame = 0 
Query:    1 MAEETSAGAGAGAEDSLAARELESAKNTPALEAQHREVTKGKVRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLGVPEAMRETVFRYDDTNPEAESQEYIDSLREDVEWLGWTPMQTTFTSDYFDKLYELAVQLIRDGKAYVCHQTGEEISKSRAIAKEKAANAEFEGDPNSPWRDRPVEESLKLFDDMRLGKFKENTATLRLKMDMSSANFNMYDQVAYRIKFIPHPHAGEKWVIYPTYDYTHCIVDSLEHVDYSICTLEFETRRESYYWVLEALQLYRPKVYEFSRLNITYTVLSKRKLLKLVKGNQVQGWDDPRMPTIKGLRRRGYTADILNAFCKDIGVTRNENVIQYERLQHWARAILNETAPRAMGVLNPILLTITNLSSPLSLEAPDFPFAPERGTHPVLLTPQLYIDASDFRQEDSKDYFGLAPGKSAILKYAFPVRVDEVLLNEKGNVIELKVTADKEGKGPKPRGAITWVSAEEGKSVPTEFRLYNHLFTVECPGDETWESELNPLSLEKREGGRVDVSVLKA-GEIPPVCSTFQLERVGYFTVDPDSSKETLVLNRVVTLKEGGVKKEEGGEDGGKGKSRKEEQARQLAEKEARKNMDPKDMFRVEGEKEKYGAFDDDGVPTKDAQGELLSKSLVKKLKKEWEKQKRLFESNRK 665
            MAEE   GAG G EDSLAARELESAKN+PALE +HR+VTKGKVRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLGVPE MRETVFRYDDTNPEAESQEYIDSLREDVEWLGWTP QTTFTSDYFD+LY+LAV+LIR  KAYVCHQTGE+ISKSR+IAKEKA N  FEGDPNSPWRDRP+EESL+LF+DMRLGKFKEN ATLR+KMDMSS NFNMYDQVAYRIKFIPHPHAG+ WV+YPTYD+THCI+DSLEH+DYSICTLEFETRRESYYWVLEAL LYRPKVYEFSRLNITYTVLSKRKLLKLVK   V GWDDPRMPTIKGLRRRGYTADILNAFCKDIGVTRNEN+IQYERLQHWAR ILNETA RAMGV +PIL+TI+NL  P+ LE+PDFPFAPERG+H ++LTP++YIDASDFR++DSKDYFGLAPGKSAILKYAFPV V+EVL N+ G+V+ELKVTADK+G  PKP+GAITWVSA     V  EFRLYNHLFTVECPG +TWE+ELNPLSLE +  G +D SVL   G++P V +TFQLERVGYFTVDPD++   LVLNRVVTLKE  VKK+      GKG+SRKEEQARQL EKEARKN+DPKDMF  + E +KY AFD+DG+PTKD +G LLSKSLVKKLKKEWEKQKRLF+SNRK
Sbjct:    1 MAEEV--GAGGGGEDSLAARELESAKNSPALEEEHRQVTKGKVRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLGVPEDMRETVFRYDDTNPEAESQEYIDSLREDVEWLGWTPAQTTFTSDYFDQLYDLAVRLIRADKAYVCHQTGEQISKSRSIAKEKAVNPHFEGDPNSPWRDRPIEESLRLFEDMRLGKFKENEATLRMKMDMSSPNFNMYDQVAYRIKFIPHPHAGDTWVVYPTYDFTHCIIDSLEHIDYSICTLEFETRRESYYWVLEALDLYRPKVYEFSRLNITYTVLSKRKLLKLVKAKWVAGWDDPRMPTIKGLRRRGYTADILNAFCKDIGVTRNENIIQYERLQHWARTILNETAKRAMGVQDPILVTISNLEEPVKLESPDFPFAPERGSHSIVLTPKIYIDASDFREDDSKDYFGLAPGKSAILKYAFPVCVNEVLYNDTGDVVELKVTADKDGSSPKPKGAITWVSAVPDNVVSAEFRLYNHLFTVECPGVDTWEAELNPLSLEVKAQGLIDTSVLTVNGQLPSVFTTFQLERVGYFTVDPDTTSAKLVLNRVVTLKESSVKKDVSTGADGKGRSRKEEQARQLLEKEARKNLDPKDMF--QAETDKYSAFDEDGIPTKDVEGILLSKSLVKKLKKEWEKQKRLFDSNRK 661
The following BLAST results are available for this feature:
BLAST of NO13G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21903.10.000e+081.35glutamine-trna ligase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02500NO13G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02500.1NO13G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02500.1.cds1NO13G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02500.1.cds2NO13G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02500.1 ID=NO13G02500.1|Name=NO13G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp
ATGGCGGAGGAAACATCGGCAGGAGCAGGAGCGGGAGCAGAGGACTCATT
GGCTGCCCGGGAGTTGGAAAGCGCCAAAAACACCCCTGCCCTTGAGGCGC
AGCACCGAGAAGTGACCAAGGGCAAGGTCCGCACGCGTTTCCCTCCGGAG
CCGAACGGTTACTTACACATTGGCCACGCCAAGTCTATGCATATGAATTT
CCACCTTGCTTTTGAGAAGCTGGGCGTGCCCGAGGCCATGCGCGAGACGG
TGTTCCGGTATGACGACACCAACCCAGAGGCGGAGAGCCAAGAATATATT
GATTCCCTGCGGGAGGACGTGGAGTGGTTGGGCTGGACGCCCATGCAAAC
CACCTTCACCTCGGACTATTTCGACAAGCTATACGAACTAGCCGTGCAGC
TCATTCGGGACGGCAAGGCCTATGTCTGCCACCAGACAGGTGAAGAGATT
AGTAAGTCGCGTGCGATTGCCAAGGAGAAGGCGGCTAATGCTGAATTTGA
GGGAGATCCGAACAGCCCCTGGCGGGATCGGCCTGTAGAGGAGTCTCTCA
AGCTCTTCGACGACATGCGCCTGGGCAAGTTCAAAGAGAACACTGCCACC
CTCCGCCTCAAGATGGACATGTCTTCCGCCAACTTCAACATGTACGATCA
AGTCGCCTACCGGATTAAATTCATTCCTCACCCACATGCCGGGGAGAAAT
GGGTCATCTACCCCACCTACGACTACACGCACTGCATCGTCGACTCGCTG
GAACACGTCGACTACAGCATCTGCACGCTCGAGTTCGAGACGAGGCGGGA
GTCATACTACTGGGTCCTGGAAGCCCTTCAGCTCTACCGGCCAAAGGTCT
ATGAATTCTCGCGGCTGAATATCACCTACACTGTCCTCTCCAAGCGCAAA
CTCCTCAAGCTCGTCAAGGGTAACCAGGTCCAGGGCTGGGACGACCCCCG
CATGCCTACCATCAAGGGACTCCGCCGCCGTGGCTACACCGCTGACATCC
TCAACGCCTTCTGCAAAGACATCGGTGTCACCCGCAATGAGAACGTGATC
CAGTACGAACGCCTCCAGCATTGGGCCCGGGCCATTTTGAACGAAACCGC
TCCCCGAGCCATGGGTGTTCTCAATCCCATTCTCCTCACCATCACCAATC
TCTCCTCCCCCCTTTCTCTCGAGGCTCCCGACTTTCCTTTTGCGCCCGAA
CGGGGCACTCACCCTGTTCTCCTCACCCCTCAGCTCTACATTGACGCCTC
GGATTTTCGTCAAGAAGACAGCAAAGACTACTTTGGTCTCGCCCCCGGCA
AGAGCGCCATTCTCAAGTACGCCTTTCCCGTGCGTGTCGATGAGGTGCTG
CTCAACGAAAAAGGGAACGTAATCGAGCTCAAGGTGACTGCAGATAAGGA
GGGGAAGGGTCCGAAGCCTAGGGGAGCCATCACATGGGTGTCAGCTGAAG
AGGGGAAATCAGTGCCGACGGAATTCAGGCTGTACAATCACTTGTTCACC
GTGGAGTGTCCCGGGGACGAGACATGGGAGTCCGAATTGAATCCGTTGTC
GTTGGAGAAGAGAGAGGGAGGGAGGGTGGATGTATCGGTGTTGAAGGCGG
GAGAGATACCTCCGGTTTGTTCGACATTTCAGTTGGAGAGGGTAGGCTAC
TTCACTGTGGACCCCGATAGTTCAAAGGAGACATTGGTGTTGAACCGGGT
GGTGACCTTGAAGGAGGGGGGGGTCAAAAAGGAGGAGGGCGGGGAGGATG
GAGGTAAGGGGAAGAGCCGGAAAGAGGAGCAGGCAAGGCAGTTGGCAGAG
AAGGAGGCAAGGAAGAACATGGACCCAAAAGATATGTTTAGGGTTGAGGG
AGAGAAGGAGAAATATGGGGCTTTTGACGACGATGGGGTGCCGACCAAGG
ACGCGCAAGGGGAGTTGTTATCCAAGAGTTTGGTGAAGAAATTGAAGAAA
GAGTGGGAGAAGCAGAAGAGGCTCTTCGAGAGCAATCGGAAGTAG
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protein sequence of NO13G02500.1

>NO13G02500.1-protein ID=NO13G02500.1-protein|Name=NO13G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MAEETSAGAGAGAEDSLAARELESAKNTPALEAQHREVTKGKVRTRFPPE
PNGYLHIGHAKSMHMNFHLAFEKLGVPEAMRETVFRYDDTNPEAESQEYI
DSLREDVEWLGWTPMQTTFTSDYFDKLYELAVQLIRDGKAYVCHQTGEEI
SKSRAIAKEKAANAEFEGDPNSPWRDRPVEESLKLFDDMRLGKFKENTAT
LRLKMDMSSANFNMYDQVAYRIKFIPHPHAGEKWVIYPTYDYTHCIVDSL
EHVDYSICTLEFETRRESYYWVLEALQLYRPKVYEFSRLNITYTVLSKRK
LLKLVKGNQVQGWDDPRMPTIKGLRRRGYTADILNAFCKDIGVTRNENVI
QYERLQHWARAILNETAPRAMGVLNPILLTITNLSSPLSLEAPDFPFAPE
RGTHPVLLTPQLYIDASDFRQEDSKDYFGLAPGKSAILKYAFPVRVDEVL
LNEKGNVIELKVTADKEGKGPKPRGAITWVSAEEGKSVPTEFRLYNHLFT
VECPGDETWESELNPLSLEKREGGRVDVSVLKAGEIPPVCSTFQLERVGY
FTVDPDSSKETLVLNRVVTLKEGGVKKEEGGEDGGKGKSRKEEQARQLAE
KEARKNMDPKDMFRVEGEKEKYGAFDDDGVPTKDAQGELLSKSLVKKLKK
EWEKQKRLFESNRK*
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mRNA from alignment at chr13:696673..698857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02500.1 ID=NO13G02500.1|Name=NO13G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2185bp|location=Sequence derived from alignment at chr13:696673..698857+ (Nannochloropsis oceanica)
ATGGCGGAGGAAACATCGGCAGGAGCAGGAGCGGGAGCAGAGGACTCATT
GGCTGCCCGGGAGTTGGAAAGCGCCAAAAACACCCCTGCCCTTGAGGCGC
AGCACCGAGAAGTGACCAAGGGCAAGGTCCGCACGCGTTTCCCTCCGGAG
CCGAACGGTTACTTACACATTGGCCACGCCAAGTCTATGCATATGAATTT
CCACCTTGCTTTTGAGAAGCTGGGCGTGCCCGAGGCCATGCGCGAGACGG
TGTTCCGGTATGACGACACCAACCCAGAGGCGGAGAGCCAAGAATATATT
GATTCCCTGCGGGAGGACGTGGAGTGGTTGGGCTGGACGCCCATGCAAAC
CACCTTCACCTCGGACTATTTCGACAAGCTATACGAACTAGCCGTGCAGC
TCATTCGGGACGGCAAGGCCTATGTCTGCCACCAGACAGGTGAAGAGATT
AGTAAGTCGCGTGCGATTGCCAAGGAGAAGGCGGCTAATGCTGAATTTGA
GGGAGATCCGAACAGCCCCTGGCGGGATCGGCCTGTAGAGGAGTCTCTCA
AGGTACGTCAGAGGGAAGGGAATGGTGCCTTGGGAGAGGAGGGGGCATCA
ATAGATCGAGGTTGCTTGCTTTGATGATGGAACCCTCTTTTCTGTTAGTG
TGTGTCTTTGCCGTGAGCTTACTTCATATCGTGCGTCGTTCTTACCAATC
TTTACCTCCCCCTATTCCTTCCTCCCTCCCTTCCTCCCCCAGCTCTTCGA
CGACATGCGCCTGGGCAAGTTCAAAGAGAACACTGCCACCCTCCGCCTCA
AGATGGACATGTCTTCCGCCAACTTCAACATGTACGATCAAGTCGCCTAC
CGGATTAAATTCATTCCTCACCCACATGCCGGGGAGAAATGGGTCATCTA
CCCCACCTACGACTACACGCACTGCATCGTCGACTCGCTGGAACACGTCG
ACTACAGCATCTGCACGCTCGAGTTCGAGACGAGGCGGGAGTCATACTAC
TGGGTCCTGGAAGCCCTTCAGCTCTACCGGCCAAAGGTCTATGAATTCTC
GCGGCTGAATATCACCTACACTGTCCTCTCCAAGCGCAAACTCCTCAAGC
TCGTCAAGGGTAACCAGGTCCAGGGCTGGGACGACCCCCGCATGCCTACC
ATCAAGGGACTCCGCCGCCGTGGCTACACCGCTGACATCCTCAACGCCTT
CTGCAAAGACATCGGTGTCACCCGCAATGAGAACGTGATCCAGTACGAAC
GCCTCCAGCATTGGGCCCGGGCCATTTTGAACGAAACCGCTCCCCGAGCC
ATGGGTGTTCTCAATCCCATTCTCCTCACCATCACCAATCTCTCCTCCCC
CCTTTCTCTCGAGGCTCCCGACTTTCCTTTTGCGCCCGAACGGGGCACTC
ACCCTGTTCTCCTCACCCCTCAGCTCTACATTGACGCCTCGGATTTTCGT
CAAGAAGACAGCAAAGACTACTTTGGTCTCGCCCCCGGCAAGAGCGCCAT
TCTCAAGTACGCCTTTCCCGTGCGTGTCGATGAGGTGCTGCTCAACGAAA
AAGGGAACGTAATCGAGCTCAAGGTGACTGCAGATAAGGAGGGGAAGGGT
CCGAAGCCTAGGGGAGCCATCACATGGGTGTCAGCTGAAGAGGGGAAATC
AGTGCCGACGGAATTCAGGCTGTACAATCACTTGTTCACCGTGGAGTGTC
CCGGGGACGAGACATGGGAGTCCGAATTGAATCCGTTGTCGTTGGAGAAG
AGAGAGGGAGGGAGGGTGGATGTATCGGTGTTGAAGGCGGGAGAGATACC
TCCGGTTTGTTCGACATTTCAGTTGGAGAGGGTAGGCTACTTCACTGTGG
ACCCCGATAGTTCAAAGGAGACATTGGTGTTGAACCGGGTGGTGACCTTG
AAGGAGGGGGGGGTCAAAAAGGAGGAGGGCGGGGAGGATGGAGGTAAGGG
GAAGAGCCGGAAAGAGGAGCAGGCAAGGCAGTTGGCAGAGAAGGAGGCAA
GGAAGAACATGGACCCAAAAGATATGTTTAGGGTTGAGGGAGAGAAGGAG
AAATATGGGGCTTTTGACGACGATGGGGTGCCGACCAAGGACGCGCAAGG
GGAGTTGTTATCCAAGAGTTTGGTGAAGAAATTGAAGAAAGAGTGGGAGA
AGCAGAAGAGGCTCTTCGAGAGCAATCGGAAGTAG
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Coding sequence (CDS) from alignment at chr13:696673..698857+

>NO13G02500.1 ID=NO13G02500.1|Name=NO13G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at chr13:696673..698857+ (Nannochloropsis oceanica)
ATGGCGGAGGAAACATCGGCAGGAGCAGGAGCGGGAGCAGAGGACTCATT
GGCTGCCCGGGAGTTGGAAAGCGCCAAAAACACCCCTGCCCTTGAGGCGC
AGCACCGAGAAGTGACCAAGGGCAAGGTCCGCACGCGTTTCCCTCCGGAG
CCGAACGGTTACTTACACATTGGCCACGCCAAGTCTATGCATATGAATTT
CCACCTTGCTTTTGAGAAGCTGGGCGTGCCCGAGGCCATGCGCGAGACGG
TGTTCCGGTATGACGACACCAACCCAGAGGCGGAGAGCCAAGAATATATT
GATTCCCTGCGGGAGGACGTGGAGTGGTTGGGCTGGACGCCCATGCAAAC
CACCTTCACCTCGGACTATTTCGACAAGCTATACGAACTAGCCGTGCAGC
TCATTCGGGACGGCAAGGCCTATGTCTGCCACCAGACAGGTGAAGAGATT
AGTAAGTCGCGTGCGATTGCCAAGGAGAAGGCGGCTAATGCTGAATTTGA
GGGAGATCCGAACAGCCCCTGGCGGGATCGGCCTGTAGAGGAGTCTCTCA
AGCTCTTCGACGACATGCGCCTGGGCAAGTTCAAAGAGAACACTGCCACC
CTCCGCCTCAAGATGGACATGTCTTCCGCCAACTTCAACATGTACGATCA
AGTCGCCTACCGGATTAAATTCATTCCTCACCCACATGCCGGGGAGAAAT
GGGTCATCTACCCCACCTACGACTACACGCACTGCATCGTCGACTCGCTG
GAACACGTCGACTACAGCATCTGCACGCTCGAGTTCGAGACGAGGCGGGA
GTCATACTACTGGGTCCTGGAAGCCCTTCAGCTCTACCGGCCAAAGGTCT
ATGAATTCTCGCGGCTGAATATCACCTACACTGTCCTCTCCAAGCGCAAA
CTCCTCAAGCTCGTCAAGGGTAACCAGGTCCAGGGCTGGGACGACCCCCG
CATGCCTACCATCAAGGGACTCCGCCGCCGTGGCTACACCGCTGACATCC
TCAACGCCTTCTGCAAAGACATCGGTGTCACCCGCAATGAGAACGTGATC
CAGTACGAACGCCTCCAGCATTGGGCCCGGGCCATTTTGAACGAAACCGC
TCCCCGAGCCATGGGTGTTCTCAATCCCATTCTCCTCACCATCACCAATC
TCTCCTCCCCCCTTTCTCTCGAGGCTCCCGACTTTCCTTTTGCGCCCGAA
CGGGGCACTCACCCTGTTCTCCTCACCCCTCAGCTCTACATTGACGCCTC
GGATTTTCGTCAAGAAGACAGCAAAGACTACTTTGGTCTCGCCCCCGGCA
AGAGCGCCATTCTCAAGTACGCCTTTCCCGTGCGTGTCGATGAGGTGCTG
CTCAACGAAAAAGGGAACGTAATCGAGCTCAAGGTGACTGCAGATAAGGA
GGGGAAGGGTCCGAAGCCTAGGGGAGCCATCACATGGGTGTCAGCTGAAG
AGGGGAAATCAGTGCCGACGGAATTCAGGCTGTACAATCACTTGTTCACC
GTGGAGTGTCCCGGGGACGAGACATGGGAGTCCGAATTGAATCCGTTGTC
GTTGGAGAAGAGAGAGGGAGGGAGGGTGGATGTATCGGTGTTGAAGGCGG
GAGAGATACCTCCGGTTTGTTCGACATTTCAGTTGGAGAGGGTAGGCTAC
TTCACTGTGGACCCCGATAGTTCAAAGGAGACATTGGTGTTGAACCGGGT
GGTGACCTTGAAGGAGGGGGGGGTCAAAAAGGAGGAGGGCGGGGAGGATG
GAGGTAAGGGGAAGAGCCGGAAAGAGGAGCAGGCAAGGCAGTTGGCAGAG
AAGGAGGCAAGGAAGAACATGGACCCAAAAGATATGTTTAGGGTTGAGGG
AGAGAAGGAGAAATATGGGGCTTTTGACGACGATGGGGTGCCGACCAAGG
ACGCGCAAGGGGAGTTGTTATCCAAGAGTTTGGTGAAGAAATTGAAGAAA
GAGTGGGAGAAGCAGAAGAGGCTCTTCGAGAGCAATCGGAAGTAG
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Synonyms
Publications