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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:677474..680987 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02450.1 vs.
Match: EWM21907.1 (nudix hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 494.6 bits (1272), Expect = 2.900e-136 Identity = 259/406 (63.79%), Postives = 307/406 (75.62%), Query Frame = 0
Query: 1 MWRTGLGILMFWARFSKASFIASPYTVDSIKAMASRRTPLGIAHTFSGLGLDRSRVETELKEVAAFESALKTDGAAFALFHGTSALITKERQTKIVYQTGDMLQKLYGISIEQLQPTNKSSRLTTSGNS--SSAPYFPCVALGASVSGWAFAVDVSKRSKEDVESKAEAAGEVAVQFEPVRALLAVLTEEDIAVAGLGASILAWHRQHQHCGVCGSPMIAVEGGGRRACTS--CRNRAYPRVDPVVIALVTDPARDMVLLGRQRVYRPGMFSCLAGYVSQCESLEEAVRREVKEESGISVGDVMYHSSQPWPIGRGASCQIMVGYIATATSMDISMDTDELEDCRWFSRAEVAGAKELVVSAALDPTGENPGGLSIPGPYAIAHHLIKHWLLTTTPQEASGGRNKL 403
MW L LMF R S+A + + ++RR+PLGI HTFSG+ +DRSRVE ELKE +AF++AL++ GAAFALFHGTSAL+ + K+ + + LQ LY IS++Q +P+ LT N +S P +PC+ALGAS SGWAFAVDVS RS+ + E K EA G + +FEPVRALLA L + DIA+AGLGAS LAWHRQHQ CG+CGS M+AVE GGRRACTS CRNRAYPRVDPVVIALV DP RD +LLGRQ VYRP M+SCLAGYV CESLEEAVRREVKEESGI VG++ YHSSQPWPIGRGASCQ+MVG+ ATATS +I +DT+ELEDCRWFSRAEVA A+ELVV+ P+ E+ LSIPGPYAIAHHLIK+WL TT + GRNKL
Sbjct: 1 MWEPLLVFLMF-CRSSQAF---------TNRMHSTRRSPLGIVHTFSGMDIDRSRVEAELKEASAFQNALRSHGAAFALFHGTSALVITDSPMKLAFHDAEKLQTLYEISLQQFEPS-----LTCISNDVGNSIPIYPCIALGASASGWAFAVDVSNRSRNEFEVKNEAEGNL--RFEPVRALLATLNQRDIAMAGLGASTLAWHRQHQFCGLCGSRMVAVEAGGRRACTSETCRNRAYPRVDPVVIALVQDPVRDKILLGRQSVYRPMMYSCLAGYVGPCESLEEAVRREVKEESGIDVGEMSYHSSQPWPIGRGASCQMMVGFTATATSTEIHIDTNELEDCRWFSRAEVAEAEELVVARRPGPSDESSKTLSIPGPYAIAHHLIKNWLSTTKAPLQASGRNKL 389
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02450.1 ID=NO13G02450.1|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3298bp GCATTTATCTGACAATTGTACTTCTCATCGATTTTCTGCAAGCCTCTTCA TGTCTTCGTGACGTTAGTCGCTCGGGGGGGTGTCTCACTATAAACATCCA ATCCTATTTCGTTCGCTCTGTTCAAGCATCATGTTCCTTTCTTTGCCACT CTACAACTACGTTCTTTTATTTCTGTGTTTGTGTGTATCCCTTCATCGTC TCCTTTTCAATACTCTCTTTCAATCTCCTCCACTCCTTCCTCCGCAACTA TATTCACGCGGAAAAGGGGTCCAATTCCGAAGGTCGCCATCACATGATGT TGGGTCCTCGCCATTCCCCTCGTGGAAAGCGGAGAAGAGTCTCATTATCC ATTCACTCCTCCATTTCCCCCCCAACCAGGCCTAAAACCCCTCCTCCTCA AATTTGACCGCCTCATCCTTTAAAGCTGGTCGCCGCATTCCCCAAAATCG CGCCAAAGGCACCCCTTCCCCTTCATTCGATTCACCACAAAATGTAAACA GCCAGCCCAAATGTAAGCTGCATCGCCAACAATAAGCAATCGTCCACGCA TACCCTTTAAACCACGAATTGTCCCTCTCGGGCTCCCCTTCCAACGCTAC TGCCTCTTCCCCCACATCTGCCCCTTTCAGCAGCTCTCGCAGCGTCAACG TCTGGTGCACGATTCCCGCAGGATTACTGTACGCCCCCACCGTACCCTCC GCACCAGGCACGCTAAAAACGGCATCTTTGCTCGCCATGGGATTATCGCA TCCCGCGCAGCAAAGCCTGCGTTCCGCTGTGTTTTTCAGTAATTCGATCT CTTTTCGAAGCCTGTACACAGCTGATTCCATCGACAGCAACTCCTGTCGT GCTATGTCGTCAAGTGGTAAATTGGCAGCCAAGCGAAATGAAAACGCCAC CGGTTCCACCGTCAAACCTGCAATGTCCTCCCCCCCTCTGCCGTGCCTTT CGCCTTCTCCTTCTTGGCTCTCCAGCAAGCGCGTGAATGCCAAACCGGAC GCACCCATAATCCCCTCCCAAGCCGCCACCGATTGGATGATGCCCTGTGC TTTCTGCACCAAATTGGGAGCATATAAAAAGCTCGATCGAAACCAGTACA TTGATTGGTGTTGCTTGATGGCTGCCGTACTCAGGGGTCTTTGCCATTGT GGCAAGCGCGGTGGTGCTATGATGCAGTCCTCGGGGAGAATGCGGACATG AGCGTGTGGGACTCCATGACGCGTCTCCATATTCCGATCTCCATCGAGGT CTAGAAATTGAAACCGTTGACGGCCCCGTGTCTGAACAACAAATGCGCTG TGGCCATCCCATTCTGATTCCATCTCGACAAGTTCGCATGTGCAACCCAC TCTCGCTGTGCCTCGGCCGGACTCAAAACGCGCGTTGAGAATGCCGAGAA AGGCTGCTTGACCCCCTCGTTGTGCCGAAGCAATCGCGAGGACAAGACGG ATGTGGTGAAGTTTCCAGAGTCGTAATGGCAACGTCTCACCCGGAAAAAG CACGACTTGGGGCAGAATCAGCAGGGGAAGTTCCATCACAGTGTTAGCAG GGAGTAAGTGAGCCCGCGTCAGGCTCTCCATTCTGCAGCGTCCGATGGGA CTCACAGTGTATAACGTTCTTCAGGTGTGTTCAGCAGCAACGTGAATGGG CTGTCCTTGCATCCTGTGTTGAGATAGCCAGCATCTCTGGTGCATGCAGG GAGATGGATTCGATGAGAAAGTGATCCCGTTGCTTCGGGTTTTTGGGGAA GGGTTGGTTGCTGTGTCGGGGGGAGGTTGGAGAGTTATGAGTTATGCCGA TGTCCTCGAGGCGACCAAACGCATGCTAGGATTTCACGTCCAGCCCTAAG GAATCCCAGTACTTTTGGGGGGGGCATTCGTTTTCTTCGCCTCAGGTAGC GTCTGCCCGCAAAGACGGCAGCCAACTGGAGCGTACCCGGCCCGTTGCGC TCGATTCTCCCACACCGCTCTCGCTCACATTCTGATATAAATAAATATAT ATATATATTTATATACCCACAATATGTACACAGGAGTGTAGGAGAGCGTC CTCTTCTAGGGTTAAGTGCATGTGGAGGACAGGGCTTGGCATTTTGATGT TTTGGGCCCGCTTTTCCAAGGCCTCCTTCATTGCCTCACCGTACACTGTC GACAGCATCAAAGCTATGGCCTCCCGCCGCACTCCGCTTGGCATCGCGCA CACCTTCAGCGGCTTGGGGCTGGACCGCAGCCGCGTGGAGACGGAGCTGA AAGAGGTGGCGGCCTTTGAAAGTGCACTGAAAACCGATGGCGCGGCCTTT GCCTTGTTCCACGGAACGTCAGCCCTAATCACGAAAGAGAGACAAACCAA GATTGTCTATCAGACTGGCGACATGCTCCAAAAGCTTTATGGAATTTCCA TCGAACAACTGCAGCCAACCAACAAAAGCAGCAGACTAACCACCAGCGGT AATAGCTCTTCTGCACCATACTTTCCGTGTGTCGCGCTCGGTGCATCCGT GAGCGGATGGGCTTTCGCCGTAGATGTCTCCAAGCGATCCAAAGAGGATG TGGAGAGCAAGGCAGAGGCAGCTGGAGAAGTCGCCGTCCAGTTTGAACCC GTACGGGCGCTGTTAGCAGTCCTCACGGAAGAGGACATTGCAGTGGCAGG GCTGGGTGCGTCTATTTTGGCCTGGCACCGTCAGCACCAGCACTGTGGAG TGTGTGGCAGTCCAATGATAGCGGTGGAAGGAGGAGGGCGTCGCGCCTGT ACAAGCTGCCGAAATCGCGCGTATCCGCGCGTTGATCCCGTCGTAATTGC TTTGGTGACGGACCCTGCGAGGGATATGGTGTTGTTAGGACGTCAGAGAG TGTATCGGCCCGGGATGTTCTCATGTTTAGCTGGGTACGTGAGTCAGTGC GAAAGCTTGGAGGAGGCTGTACGAAGAGAGGTAAAGGAAGAATCAGGAAT CAGCGTGGGGGATGTAATGTATCACAGCTCGCAGCCCTGGCCGATTGGGC GGGGGGCGTCGTGTCAGATAATGGTGGGCTATATCGCGACTGCTACCAGT ATGGATATCTCCATGGACACGGACGAACTGGAGGATTGCCGGTGGTTTTC TCGGGCCGAAGTGGCGGGCGCAAAGGAGCTGGTTGTGTCCGCAGCGTTGG ACCCAACGGGGGAAAACCCGGGTGGGTTGAGTATTCCTGGGCCTTACGCG ATAGCGCATCATTTGATCAAGCACTGGCTGTTGACGACGACGCCGCAAGA AGCGTCAGGAGGACGTAATAAATTATGAAAAATGTATTTGGGCCGAGG back to topprotein sequence of NO13G02450.1 >NO13G02450.1-protein ID=NO13G02450.1-protein|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp MWRTGLGILMFWARFSKASFIASPYTVDSIKAMASRRTPLGIAHTFSGLG LDRSRVETELKEVAAFESALKTDGAAFALFHGTSALITKERQTKIVYQTG DMLQKLYGISIEQLQPTNKSSRLTTSGNSSSAPYFPCVALGASVSGWAFA VDVSKRSKEDVESKAEAAGEVAVQFEPVRALLAVLTEEDIAVAGLGASIL AWHRQHQHCGVCGSPMIAVEGGGRRACTSCRNRAYPRVDPVVIALVTDPA RDMVLLGRQRVYRPGMFSCLAGYVSQCESLEEAVRREVKEESGISVGDVM YHSSQPWPIGRGASCQIMVGYIATATSMDISMDTDELEDCRWFSRAEVAG AKELVVSAALDPTGENPGGLSIPGPYAIAHHLIKHWLLTTTPQEASGGRN KL* back to topmRNA from alignment at chr13:677474..680987+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02450.1 ID=NO13G02450.1|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3514bp|location=Sequence derived from alignment at chr13:677474..680987+ (Nannochloropsis oceanica) GCATTTATCTGACAATTGTACTTCTCATCGATTTTCTGCAAGCCTCTTCA
TGTCTTCGTGACGTTAGTCGCTCGGGGGGGTGTCTCACTATAAACATCCA
ATCCTATTTCGTTCGCTCTGTTCAAGCATCATGTTCCTTTCTTTGCCACT
CTACAACTACGTTCTTTTATTTCTGTGTTTGTGTGTATCCCTTCATCGTC
TCCTTTTCAATACTCTCTTTCAATCTCCTCCACTCCTTCCTCCGCAACTA
TATTCACGCGGAAAAGGGGTCCAATTCCGAAGGTCGCCATCACATGATGT
TGGGTCCTCGCCATTCCCCTCGTGGAAAGCGGAGAAGAGTCTCATTATCC
ATTCACTCCTCCATTTCCCCCCCAACCAGGCCTAAAACCCCTCCTCCTCA
AATTTGACCGCCTCATCCTTTAAAGCTGGTCGCCGCATTCCCCAAAATCG
CGCCAAAGGCACCCCTTCCCCTTCATTCGATTCACCACAAAATGTAAACA
GCCAGCCCAAATGTAAGCTGCATCGCCAACAATAAGCAATCGTCCACGCA
TACCCTTTAAACCACGAATTGTCCCTCTCGGGCTCCCCTTCCAACGCTAC
TGCCTCTTCCCCCACATCTGCCCCTTTCAGCAGCTCTCGCAGCGTCAACG
TCTGGTGCACGATTCCCGCAGGATTACTGTACGCCCCCACCGTACCCTCC
GCACCAGGCACGCTAAAAACGGCATCTTTGCTCGCCATGGGATTATCGCA
TCCCGCGCAGCAAAGCCTGCGTTCCGCTGTGTTTTTCAGTAATTCGATCT
CTTTTCGAAGCCTGTACACAGCTGATTCCATCGACAGCAACTCCTGTCGT
GCTATGTCGTCAAGTGGTAAATTGGCAGCCAAGCGAAATGAAAACGCCAC
CGGTTCCACCGTCAAACCTGCAATGTCCTCCCCCCCTCTGCCGTGCCTTT
CGCCTTCTCCTTCTTGGCTCTCCAGCAAGCGCGTGAATGCCAAACCGGAC
GCACCCATAATCCCCTCCCAAGCCGCCACCGATTGGATGATGCCCTGTGC
TTTCTGCACCAAATTGGGAGCATATAAAAAGCTCGATCGAAACCAGTACA
TTGATTGGTGTTGCTTGATGGCTGCCGTACTCAGGGGTCTTTGCCATTGT
GGCAAGCGCGGTGGTGCTATGATGCAGTCCTCGGGGAGAATGCGGACATG
AGCGTGTGGGACTCCATGACGCGTCTCCATATTCCGATCTCCATCGAGGT
CTAGAAATTGAAACCGTTGACGGCCCCGTGTCTGAACAACAAATGCGCTG
TGGCCATCCCATTCTGATTCCATCTCGACAAGTTCGCATGTGCAACCCAC
TCTCGCTGTGCCTCGGCCGGACTCAAAACGCGCGTTGAGAATGCCGAGAA
AGGCTGCTTGACCCCCTCGTTGTGCCGAAGCAATCGCGAGGACAAGACGG
ATGTGGTGAAGTTTCCAGAGTCGTAATGGCAACGTCTCACCCGGAAAAAG
CACGACTTGGGGCAGAATCAGCAGGGGAAGTTCCATCACAGTGTTAGCAG
GGAGTAAGTGAGCCCGCGTCAGGCTCTCCATTCTGCAGCGTCCGATGGGA
CTCACAGTGTATAACGTTCTTCAGGTGTGTTCAGCAGCAACGTGAATGGG
CTGTCCTTGCATCCTGTGTTGAGATAGCCAGCATCTCTGGTGCATGCAGG
GAGATGGATTCGATGAGAAAGTGATCCCGTTGCTTCGGGTTTTTGGGGAA
GGGTTGGTTGCTGTGTCGGGGGGAGGTTGGAGAGTTATGAGTTATGCCGA
TGTCCTCGAGGCGACCAAACGCATGCTAGGATTTCACGTCCAGCCCTAAG
GAATCCCAGTACTTTTGGGGGGGGCATTCGTTTTCTTCGCCTCAGGTAGC
GTCTGCCCGCAAAGACGGCAGCCAACTGGAGCGTACCCGGCCCGTTGCGC
TCGATTCTCCCACACCGCTCTCGCTCACATTCTGATATAAATAAATATAT
ATATATATTTATATACCCACAATATGTACACAGGAGTGTAGGAGAGCGTC
CTCTTCTAGGGTTAAGTGCATGTGGAGGACAGGGCTTGGCATTTTGATGT
TTTGGGCCCGCTTTTCCAAGGCCTCCTTCATTGCCTCACCGTACACTGTC
GACAGCATCAAAGCTATGGCCTCCCGCCGCACTCCGCTTGGCATCGCGCA
CACCTTCAGCGGCTTGGGGCTGGACCGCAGCCGCGTGGAGACGGAGCTGA
AAGAGGTGGCGGCCTTTGAAAGTGCACTGAAAACCGATGGCGCGGGTACG
TGGTTAAGGACGAGAGGTCGGCAGAGCCGGTGTGTGGGTTGTACTAGCGC
ACACTTTATTCTACGCATACCGCCTTTCTAGCCCGACAGCACACCGATAA
ACAAATCCATTTTAATCTGAAGCTGATAGGCACACAAAATCGAAAGCCCA
CCAATCGTCCGCATCATCCACGTTTTATGCCTCCCCATCTCCGTTTCCCT
TCCTTCCGCAGCCTTTGCCTTGTTCCACGGAACGTCAGCCCTAATCACGA
AAGAGAGACAAACCAAGATTGTCTATCAGACTGGCGACATGCTCCAAAAG
CTTTATGGAATTTCCATCGAACAACTGCAGCCAACCAACAAAAGCAGCAG
ACTAACCACCAGCGGTAATAGCTCTTCTGCACCATACTTTCCGTGTGTCG
CGCTCGGTGCATCCGTGAGCGGATGGGCTTTCGCCGTAGATGTCTCCAAG
CGATCCAAAGAGGATGTGGAGAGCAAGGCAGAGGCAGCTGGAGAAGTCGC
CGTCCAGTTTGAACCCGTACGGGCGCTGTTAGCAGTCCTCACGGAAGAGG
ACATTGCAGTGGCAGGGCTGGGTGCGTCTATTTTGGCCTGGCACCGTCAG
CACCAGCACTGTGGAGTGTGTGGCAGTCCAATGATAGCGGTGGAAGGAGG
AGGGCGTCGCGCCTGTACAAGCTGCCGAAATCGCGCGTATCCGCGCGTTG
ATCCCGTCGTAATTGCTTTGGTGACGGACCCTGCGAGGGATATGGTGTTG
TTAGGACGTCAGAGAGTGTATCGGCCCGGGATGTTCTCATGTTTAGCTGG
GTACGTGAGTCAGTGCGAAAGCTTGGAGGAGGCTGTACGAAGAGAGGTAA
AGGAAGAATCAGGAATCAGCGTGGGGGATGTAATGTATCACAGCTCGCAG
CCCTGGCCGATTGGGCGGGGGGCGTCGTGTCAGATAATGGTGGGCTATAT
CGCGACTGCTACCAGTATGGATATCTCCATGGACACGGACGAACTGGAGG
ATTGCCGGTGGTTTTCTCGGGCCGAAGTGGCGGGCGCAAAGGAGCTGGTT
GTGTCCGCAGCGTTGGACCCAACGGGGGAAAACCCGGGTGGGTTGAGTAT
TCCTGGGCCTTACGCGATAGCGCATCATTTGATCAAGCACTGGCTGTTGA
CGACGACGCCGCAAGAAGCGTCAGGAGGACGTAATAAATTATGAAAAATG
TATTTGGGCCGAGG back to topCoding sequence (CDS) from alignment at chr13:677474..680987+ >NO13G02450.1 ID=NO13G02450.1|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr13:677474..680987+ (Nannochloropsis oceanica) ATGTGGAGGACAGGGCTTGGCATTTTGATGTTTTGGGCCCGCTTTTCCAA GGCCTCCTTCATTGCCTCACCGTACACTGTCGACAGCATCAAAGCTATGG CCTCCCGCCGCACTCCGCTTGGCATCGCGCACACCTTCAGCGGCTTGGGG CTGGACCGCAGCCGCGTGGAGACGGAGCTGAAAGAGGTGGCGGCCTTTGA AAGTGCACTGAAAACCGATGGCGCGGCCTTTGCCTTGTTCCACGGAACGT CAGCCCTAATCACGAAAGAGAGACAAACCAAGATTGTCTATCAGACTGGC GACATGCTCCAAAAGCTTTATGGAATTTCCATCGAACAACTGCAGCCAAC CAACAAAAGCAGCAGACTAACCACCAGCGGTAATAGCTCTTCTGCACCAT ACTTTCCGTGTGTCGCGCTCGGTGCATCCGTGAGCGGATGGGCTTTCGCC GTAGATGTCTCCAAGCGATCCAAAGAGGATGTGGAGAGCAAGGCAGAGGC AGCTGGAGAAGTCGCCGTCCAGTTTGAACCCGTACGGGCGCTGTTAGCAG TCCTCACGGAAGAGGACATTGCAGTGGCAGGGCTGGGTGCGTCTATTTTG GCCTGGCACCGTCAGCACCAGCACTGTGGAGTGTGTGGCAGTCCAATGAT AGCGGTGGAAGGAGGAGGGCGTCGCGCCTGTACAAGCTGCCGAAATCGCG CGTATCCGCGCGTTGATCCCGTCGTAATTGCTTTGGTGACGGACCCTGCG AGGGATATGGTGTTGTTAGGACGTCAGAGAGTGTATCGGCCCGGGATGTT CTCATGTTTAGCTGGGTACGTGAGTCAGTGCGAAAGCTTGGAGGAGGCTG TACGAAGAGAGGTAAAGGAAGAATCAGGAATCAGCGTGGGGGATGTAATG TATCACAGCTCGCAGCCCTGGCCGATTGGGCGGGGGGCGTCGTGTCAGAT AATGGTGGGCTATATCGCGACTGCTACCAGTATGGATATCTCCATGGACA CGGACGAACTGGAGGATTGCCGGTGGTTTTCTCGGGCCGAAGTGGCGGGC GCAAAGGAGCTGGTTGTGTCCGCAGCGTTGGACCCAACGGGGGAAAACCC GGGTGGGTTGAGTATTCCTGGGCCTTACGCGATAGCGCATCATTTGATCA AGCACTGGCTGTTGACGACGACGCCGCAAGAAGCGTCAGGAGGACGTAAT AAATTATGA back to top
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