NO13G02450.1, NO13G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02450.1
Unique NameNO13G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3298
Alignment locationchr13:677474..680987 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:677474..680987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02450.1 vs.
Match: EWM21907.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 494.6 bits (1272), Expect = 2.900e-136
Identity = 259/406 (63.79%), Postives = 307/406 (75.62%), Query Frame = 0
Query:    1 MWRTGLGILMFWARFSKASFIASPYTVDSIKAMASRRTPLGIAHTFSGLGLDRSRVETELKEVAAFESALKTDGAAFALFHGTSALITKERQTKIVYQTGDMLQKLYGISIEQLQPTNKSSRLTTSGNS--SSAPYFPCVALGASVSGWAFAVDVSKRSKEDVESKAEAAGEVAVQFEPVRALLAVLTEEDIAVAGLGASILAWHRQHQHCGVCGSPMIAVEGGGRRACTS--CRNRAYPRVDPVVIALVTDPARDMVLLGRQRVYRPGMFSCLAGYVSQCESLEEAVRREVKEESGISVGDVMYHSSQPWPIGRGASCQIMVGYIATATSMDISMDTDELEDCRWFSRAEVAGAKELVVSAALDPTGENPGGLSIPGPYAIAHHLIKHWLLTTTPQEASGGRNKL 403
            MW   L  LMF  R S+A          + +  ++RR+PLGI HTFSG+ +DRSRVE ELKE +AF++AL++ GAAFALFHGTSAL+  +   K+ +   + LQ LY IS++Q +P+     LT   N   +S P +PC+ALGAS SGWAFAVDVS RS+ + E K EA G +  +FEPVRALLA L + DIA+AGLGAS LAWHRQHQ CG+CGS M+AVE GGRRACTS  CRNRAYPRVDPVVIALV DP RD +LLGRQ VYRP M+SCLAGYV  CESLEEAVRREVKEESGI VG++ YHSSQPWPIGRGASCQ+MVG+ ATATS +I +DT+ELEDCRWFSRAEVA A+ELVV+    P+ E+   LSIPGPYAIAHHLIK+WL TT     + GRNKL
Sbjct:    1 MWEPLLVFLMF-CRSSQAF---------TNRMHSTRRSPLGIVHTFSGMDIDRSRVEAELKEASAFQNALRSHGAAFALFHGTSALVITDSPMKLAFHDAEKLQTLYEISLQQFEPS-----LTCISNDVGNSIPIYPCIALGASASGWAFAVDVSNRSRNEFEVKNEAEGNL--RFEPVRALLATLNQRDIAMAGLGASTLAWHRQHQFCGLCGSRMVAVEAGGRRACTSETCRNRAYPRVDPVVIALVQDPVRDKILLGRQSVYRPMMYSCLAGYVGPCESLEEAVRREVKEESGIDVGEMSYHSSQPWPIGRGASCQMMVGFTATATSTEIHIDTNELEDCRWFSRAEVAEAEELVVARRPGPSDESSKTLSIPGPYAIAHHLIKNWLSTTKAPLQASGRNKL 389          
The following BLAST results are available for this feature:
BLAST of NO13G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21907.12.900e-13663.79nudix hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02450NO13G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02450.1NO13G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02450.1.cds1NO13G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02450.1.cds2NO13G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02450.1 ID=NO13G02450.1|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3298bp
GCATTTATCTGACAATTGTACTTCTCATCGATTTTCTGCAAGCCTCTTCA
TGTCTTCGTGACGTTAGTCGCTCGGGGGGGTGTCTCACTATAAACATCCA
ATCCTATTTCGTTCGCTCTGTTCAAGCATCATGTTCCTTTCTTTGCCACT
CTACAACTACGTTCTTTTATTTCTGTGTTTGTGTGTATCCCTTCATCGTC
TCCTTTTCAATACTCTCTTTCAATCTCCTCCACTCCTTCCTCCGCAACTA
TATTCACGCGGAAAAGGGGTCCAATTCCGAAGGTCGCCATCACATGATGT
TGGGTCCTCGCCATTCCCCTCGTGGAAAGCGGAGAAGAGTCTCATTATCC
ATTCACTCCTCCATTTCCCCCCCAACCAGGCCTAAAACCCCTCCTCCTCA
AATTTGACCGCCTCATCCTTTAAAGCTGGTCGCCGCATTCCCCAAAATCG
CGCCAAAGGCACCCCTTCCCCTTCATTCGATTCACCACAAAATGTAAACA
GCCAGCCCAAATGTAAGCTGCATCGCCAACAATAAGCAATCGTCCACGCA
TACCCTTTAAACCACGAATTGTCCCTCTCGGGCTCCCCTTCCAACGCTAC
TGCCTCTTCCCCCACATCTGCCCCTTTCAGCAGCTCTCGCAGCGTCAACG
TCTGGTGCACGATTCCCGCAGGATTACTGTACGCCCCCACCGTACCCTCC
GCACCAGGCACGCTAAAAACGGCATCTTTGCTCGCCATGGGATTATCGCA
TCCCGCGCAGCAAAGCCTGCGTTCCGCTGTGTTTTTCAGTAATTCGATCT
CTTTTCGAAGCCTGTACACAGCTGATTCCATCGACAGCAACTCCTGTCGT
GCTATGTCGTCAAGTGGTAAATTGGCAGCCAAGCGAAATGAAAACGCCAC
CGGTTCCACCGTCAAACCTGCAATGTCCTCCCCCCCTCTGCCGTGCCTTT
CGCCTTCTCCTTCTTGGCTCTCCAGCAAGCGCGTGAATGCCAAACCGGAC
GCACCCATAATCCCCTCCCAAGCCGCCACCGATTGGATGATGCCCTGTGC
TTTCTGCACCAAATTGGGAGCATATAAAAAGCTCGATCGAAACCAGTACA
TTGATTGGTGTTGCTTGATGGCTGCCGTACTCAGGGGTCTTTGCCATTGT
GGCAAGCGCGGTGGTGCTATGATGCAGTCCTCGGGGAGAATGCGGACATG
AGCGTGTGGGACTCCATGACGCGTCTCCATATTCCGATCTCCATCGAGGT
CTAGAAATTGAAACCGTTGACGGCCCCGTGTCTGAACAACAAATGCGCTG
TGGCCATCCCATTCTGATTCCATCTCGACAAGTTCGCATGTGCAACCCAC
TCTCGCTGTGCCTCGGCCGGACTCAAAACGCGCGTTGAGAATGCCGAGAA
AGGCTGCTTGACCCCCTCGTTGTGCCGAAGCAATCGCGAGGACAAGACGG
ATGTGGTGAAGTTTCCAGAGTCGTAATGGCAACGTCTCACCCGGAAAAAG
CACGACTTGGGGCAGAATCAGCAGGGGAAGTTCCATCACAGTGTTAGCAG
GGAGTAAGTGAGCCCGCGTCAGGCTCTCCATTCTGCAGCGTCCGATGGGA
CTCACAGTGTATAACGTTCTTCAGGTGTGTTCAGCAGCAACGTGAATGGG
CTGTCCTTGCATCCTGTGTTGAGATAGCCAGCATCTCTGGTGCATGCAGG
GAGATGGATTCGATGAGAAAGTGATCCCGTTGCTTCGGGTTTTTGGGGAA
GGGTTGGTTGCTGTGTCGGGGGGAGGTTGGAGAGTTATGAGTTATGCCGA
TGTCCTCGAGGCGACCAAACGCATGCTAGGATTTCACGTCCAGCCCTAAG
GAATCCCAGTACTTTTGGGGGGGGCATTCGTTTTCTTCGCCTCAGGTAGC
GTCTGCCCGCAAAGACGGCAGCCAACTGGAGCGTACCCGGCCCGTTGCGC
TCGATTCTCCCACACCGCTCTCGCTCACATTCTGATATAAATAAATATAT
ATATATATTTATATACCCACAATATGTACACAGGAGTGTAGGAGAGCGTC
CTCTTCTAGGGTTAAGTGCATGTGGAGGACAGGGCTTGGCATTTTGATGT
TTTGGGCCCGCTTTTCCAAGGCCTCCTTCATTGCCTCACCGTACACTGTC
GACAGCATCAAAGCTATGGCCTCCCGCCGCACTCCGCTTGGCATCGCGCA
CACCTTCAGCGGCTTGGGGCTGGACCGCAGCCGCGTGGAGACGGAGCTGA
AAGAGGTGGCGGCCTTTGAAAGTGCACTGAAAACCGATGGCGCGGCCTTT
GCCTTGTTCCACGGAACGTCAGCCCTAATCACGAAAGAGAGACAAACCAA
GATTGTCTATCAGACTGGCGACATGCTCCAAAAGCTTTATGGAATTTCCA
TCGAACAACTGCAGCCAACCAACAAAAGCAGCAGACTAACCACCAGCGGT
AATAGCTCTTCTGCACCATACTTTCCGTGTGTCGCGCTCGGTGCATCCGT
GAGCGGATGGGCTTTCGCCGTAGATGTCTCCAAGCGATCCAAAGAGGATG
TGGAGAGCAAGGCAGAGGCAGCTGGAGAAGTCGCCGTCCAGTTTGAACCC
GTACGGGCGCTGTTAGCAGTCCTCACGGAAGAGGACATTGCAGTGGCAGG
GCTGGGTGCGTCTATTTTGGCCTGGCACCGTCAGCACCAGCACTGTGGAG
TGTGTGGCAGTCCAATGATAGCGGTGGAAGGAGGAGGGCGTCGCGCCTGT
ACAAGCTGCCGAAATCGCGCGTATCCGCGCGTTGATCCCGTCGTAATTGC
TTTGGTGACGGACCCTGCGAGGGATATGGTGTTGTTAGGACGTCAGAGAG
TGTATCGGCCCGGGATGTTCTCATGTTTAGCTGGGTACGTGAGTCAGTGC
GAAAGCTTGGAGGAGGCTGTACGAAGAGAGGTAAAGGAAGAATCAGGAAT
CAGCGTGGGGGATGTAATGTATCACAGCTCGCAGCCCTGGCCGATTGGGC
GGGGGGCGTCGTGTCAGATAATGGTGGGCTATATCGCGACTGCTACCAGT
ATGGATATCTCCATGGACACGGACGAACTGGAGGATTGCCGGTGGTTTTC
TCGGGCCGAAGTGGCGGGCGCAAAGGAGCTGGTTGTGTCCGCAGCGTTGG
ACCCAACGGGGGAAAACCCGGGTGGGTTGAGTATTCCTGGGCCTTACGCG
ATAGCGCATCATTTGATCAAGCACTGGCTGTTGACGACGACGCCGCAAGA
AGCGTCAGGAGGACGTAATAAATTATGAAAAATGTATTTGGGCCGAGG
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protein sequence of NO13G02450.1

>NO13G02450.1-protein ID=NO13G02450.1-protein|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MWRTGLGILMFWARFSKASFIASPYTVDSIKAMASRRTPLGIAHTFSGLG
LDRSRVETELKEVAAFESALKTDGAAFALFHGTSALITKERQTKIVYQTG
DMLQKLYGISIEQLQPTNKSSRLTTSGNSSSAPYFPCVALGASVSGWAFA
VDVSKRSKEDVESKAEAAGEVAVQFEPVRALLAVLTEEDIAVAGLGASIL
AWHRQHQHCGVCGSPMIAVEGGGRRACTSCRNRAYPRVDPVVIALVTDPA
RDMVLLGRQRVYRPGMFSCLAGYVSQCESLEEAVRREVKEESGISVGDVM
YHSSQPWPIGRGASCQIMVGYIATATSMDISMDTDELEDCRWFSRAEVAG
AKELVVSAALDPTGENPGGLSIPGPYAIAHHLIKHWLLTTTPQEASGGRN
KL*
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mRNA from alignment at chr13:677474..680987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02450.1 ID=NO13G02450.1|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3514bp|location=Sequence derived from alignment at chr13:677474..680987+ (Nannochloropsis oceanica)
GCATTTATCTGACAATTGTACTTCTCATCGATTTTCTGCAAGCCTCTTCA TGTCTTCGTGACGTTAGTCGCTCGGGGGGGTGTCTCACTATAAACATCCA ATCCTATTTCGTTCGCTCTGTTCAAGCATCATGTTCCTTTCTTTGCCACT CTACAACTACGTTCTTTTATTTCTGTGTTTGTGTGTATCCCTTCATCGTC TCCTTTTCAATACTCTCTTTCAATCTCCTCCACTCCTTCCTCCGCAACTA TATTCACGCGGAAAAGGGGTCCAATTCCGAAGGTCGCCATCACATGATGT TGGGTCCTCGCCATTCCCCTCGTGGAAAGCGGAGAAGAGTCTCATTATCC ATTCACTCCTCCATTTCCCCCCCAACCAGGCCTAAAACCCCTCCTCCTCA AATTTGACCGCCTCATCCTTTAAAGCTGGTCGCCGCATTCCCCAAAATCG CGCCAAAGGCACCCCTTCCCCTTCATTCGATTCACCACAAAATGTAAACA GCCAGCCCAAATGTAAGCTGCATCGCCAACAATAAGCAATCGTCCACGCA TACCCTTTAAACCACGAATTGTCCCTCTCGGGCTCCCCTTCCAACGCTAC TGCCTCTTCCCCCACATCTGCCCCTTTCAGCAGCTCTCGCAGCGTCAACG TCTGGTGCACGATTCCCGCAGGATTACTGTACGCCCCCACCGTACCCTCC GCACCAGGCACGCTAAAAACGGCATCTTTGCTCGCCATGGGATTATCGCA TCCCGCGCAGCAAAGCCTGCGTTCCGCTGTGTTTTTCAGTAATTCGATCT CTTTTCGAAGCCTGTACACAGCTGATTCCATCGACAGCAACTCCTGTCGT GCTATGTCGTCAAGTGGTAAATTGGCAGCCAAGCGAAATGAAAACGCCAC CGGTTCCACCGTCAAACCTGCAATGTCCTCCCCCCCTCTGCCGTGCCTTT CGCCTTCTCCTTCTTGGCTCTCCAGCAAGCGCGTGAATGCCAAACCGGAC GCACCCATAATCCCCTCCCAAGCCGCCACCGATTGGATGATGCCCTGTGC TTTCTGCACCAAATTGGGAGCATATAAAAAGCTCGATCGAAACCAGTACA TTGATTGGTGTTGCTTGATGGCTGCCGTACTCAGGGGTCTTTGCCATTGT GGCAAGCGCGGTGGTGCTATGATGCAGTCCTCGGGGAGAATGCGGACATG AGCGTGTGGGACTCCATGACGCGTCTCCATATTCCGATCTCCATCGAGGT CTAGAAATTGAAACCGTTGACGGCCCCGTGTCTGAACAACAAATGCGCTG TGGCCATCCCATTCTGATTCCATCTCGACAAGTTCGCATGTGCAACCCAC TCTCGCTGTGCCTCGGCCGGACTCAAAACGCGCGTTGAGAATGCCGAGAA AGGCTGCTTGACCCCCTCGTTGTGCCGAAGCAATCGCGAGGACAAGACGG ATGTGGTGAAGTTTCCAGAGTCGTAATGGCAACGTCTCACCCGGAAAAAG CACGACTTGGGGCAGAATCAGCAGGGGAAGTTCCATCACAGTGTTAGCAG GGAGTAAGTGAGCCCGCGTCAGGCTCTCCATTCTGCAGCGTCCGATGGGA CTCACAGTGTATAACGTTCTTCAGGTGTGTTCAGCAGCAACGTGAATGGG CTGTCCTTGCATCCTGTGTTGAGATAGCCAGCATCTCTGGTGCATGCAGG GAGATGGATTCGATGAGAAAGTGATCCCGTTGCTTCGGGTTTTTGGGGAA GGGTTGGTTGCTGTGTCGGGGGGAGGTTGGAGAGTTATGAGTTATGCCGA TGTCCTCGAGGCGACCAAACGCATGCTAGGATTTCACGTCCAGCCCTAAG GAATCCCAGTACTTTTGGGGGGGGCATTCGTTTTCTTCGCCTCAGGTAGC GTCTGCCCGCAAAGACGGCAGCCAACTGGAGCGTACCCGGCCCGTTGCGC TCGATTCTCCCACACCGCTCTCGCTCACATTCTGATATAAATAAATATAT ATATATATTTATATACCCACAATATGTACACAGGAGTGTAGGAGAGCGTC CTCTTCTAGGGTTAAGTGCATGTGGAGGACAGGGCTTGGCATTTTGATGT TTTGGGCCCGCTTTTCCAAGGCCTCCTTCATTGCCTCACCGTACACTGTC GACAGCATCAAAGCTATGGCCTCCCGCCGCACTCCGCTTGGCATCGCGCA CACCTTCAGCGGCTTGGGGCTGGACCGCAGCCGCGTGGAGACGGAGCTGA AAGAGGTGGCGGCCTTTGAAAGTGCACTGAAAACCGATGGCGCGGGTACG TGGTTAAGGACGAGAGGTCGGCAGAGCCGGTGTGTGGGTTGTACTAGCGC ACACTTTATTCTACGCATACCGCCTTTCTAGCCCGACAGCACACCGATAA ACAAATCCATTTTAATCTGAAGCTGATAGGCACACAAAATCGAAAGCCCA CCAATCGTCCGCATCATCCACGTTTTATGCCTCCCCATCTCCGTTTCCCT TCCTTCCGCAGCCTTTGCCTTGTTCCACGGAACGTCAGCCCTAATCACGA AAGAGAGACAAACCAAGATTGTCTATCAGACTGGCGACATGCTCCAAAAG CTTTATGGAATTTCCATCGAACAACTGCAGCCAACCAACAAAAGCAGCAG ACTAACCACCAGCGGTAATAGCTCTTCTGCACCATACTTTCCGTGTGTCG CGCTCGGTGCATCCGTGAGCGGATGGGCTTTCGCCGTAGATGTCTCCAAG CGATCCAAAGAGGATGTGGAGAGCAAGGCAGAGGCAGCTGGAGAAGTCGC CGTCCAGTTTGAACCCGTACGGGCGCTGTTAGCAGTCCTCACGGAAGAGG ACATTGCAGTGGCAGGGCTGGGTGCGTCTATTTTGGCCTGGCACCGTCAG CACCAGCACTGTGGAGTGTGTGGCAGTCCAATGATAGCGGTGGAAGGAGG AGGGCGTCGCGCCTGTACAAGCTGCCGAAATCGCGCGTATCCGCGCGTTG ATCCCGTCGTAATTGCTTTGGTGACGGACCCTGCGAGGGATATGGTGTTG TTAGGACGTCAGAGAGTGTATCGGCCCGGGATGTTCTCATGTTTAGCTGG GTACGTGAGTCAGTGCGAAAGCTTGGAGGAGGCTGTACGAAGAGAGGTAA AGGAAGAATCAGGAATCAGCGTGGGGGATGTAATGTATCACAGCTCGCAG CCCTGGCCGATTGGGCGGGGGGCGTCGTGTCAGATAATGGTGGGCTATAT CGCGACTGCTACCAGTATGGATATCTCCATGGACACGGACGAACTGGAGG ATTGCCGGTGGTTTTCTCGGGCCGAAGTGGCGGGCGCAAAGGAGCTGGTT GTGTCCGCAGCGTTGGACCCAACGGGGGAAAACCCGGGTGGGTTGAGTAT TCCTGGGCCTTACGCGATAGCGCATCATTTGATCAAGCACTGGCTGTTGA CGACGACGCCGCAAGAAGCGTCAGGAGGACGTAATAAATTATGAAAAATG TATTTGGGCCGAGG
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Coding sequence (CDS) from alignment at chr13:677474..680987+

>NO13G02450.1 ID=NO13G02450.1|Name=NO13G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr13:677474..680987+ (Nannochloropsis oceanica)
ATGTGGAGGACAGGGCTTGGCATTTTGATGTTTTGGGCCCGCTTTTCCAA
GGCCTCCTTCATTGCCTCACCGTACACTGTCGACAGCATCAAAGCTATGG
CCTCCCGCCGCACTCCGCTTGGCATCGCGCACACCTTCAGCGGCTTGGGG
CTGGACCGCAGCCGCGTGGAGACGGAGCTGAAAGAGGTGGCGGCCTTTGA
AAGTGCACTGAAAACCGATGGCGCGGCCTTTGCCTTGTTCCACGGAACGT
CAGCCCTAATCACGAAAGAGAGACAAACCAAGATTGTCTATCAGACTGGC
GACATGCTCCAAAAGCTTTATGGAATTTCCATCGAACAACTGCAGCCAAC
CAACAAAAGCAGCAGACTAACCACCAGCGGTAATAGCTCTTCTGCACCAT
ACTTTCCGTGTGTCGCGCTCGGTGCATCCGTGAGCGGATGGGCTTTCGCC
GTAGATGTCTCCAAGCGATCCAAAGAGGATGTGGAGAGCAAGGCAGAGGC
AGCTGGAGAAGTCGCCGTCCAGTTTGAACCCGTACGGGCGCTGTTAGCAG
TCCTCACGGAAGAGGACATTGCAGTGGCAGGGCTGGGTGCGTCTATTTTG
GCCTGGCACCGTCAGCACCAGCACTGTGGAGTGTGTGGCAGTCCAATGAT
AGCGGTGGAAGGAGGAGGGCGTCGCGCCTGTACAAGCTGCCGAAATCGCG
CGTATCCGCGCGTTGATCCCGTCGTAATTGCTTTGGTGACGGACCCTGCG
AGGGATATGGTGTTGTTAGGACGTCAGAGAGTGTATCGGCCCGGGATGTT
CTCATGTTTAGCTGGGTACGTGAGTCAGTGCGAAAGCTTGGAGGAGGCTG
TACGAAGAGAGGTAAAGGAAGAATCAGGAATCAGCGTGGGGGATGTAATG
TATCACAGCTCGCAGCCCTGGCCGATTGGGCGGGGGGCGTCGTGTCAGAT
AATGGTGGGCTATATCGCGACTGCTACCAGTATGGATATCTCCATGGACA
CGGACGAACTGGAGGATTGCCGGTGGTTTTCTCGGGCCGAAGTGGCGGGC
GCAAAGGAGCTGGTTGTGTCCGCAGCGTTGGACCCAACGGGGGAAAACCC
GGGTGGGTTGAGTATTCCTGGGCCTTACGCGATAGCGCATCATTTGATCA
AGCACTGGCTGTTGACGACGACGCCGCAAGAAGCGTCAGGAGGACGTAAT
AAATTATGA
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Synonyms
Publications