NO13G02400.1, NO13G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02400.1
Unique NameNO13G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1791
Alignment locationchr13:665598..667388 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:665598..667388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02400.1 vs.
Match: EWM21915.1 (glutathione synthetase [Nannochloropsis gaditana])

HSP 1 Score: 720.3 bits (1858), Expect = 4.900e-204
Identity = 378/584 (64.73%), Postives = 446/584 (76.37%), Query Frame = 0 
Query:   10 DPTFLLVPRNDNVRDALVHQALGVTATNGLLMQTATRNADSSSNANPSTPMYGHAPISLLPNAFPAHEYVKARRLAPIWNELVARVAYDREWLLRTLESVLPHDDFTRRLVEIYQAIDGAGRDVQKIHLGVNRSDYMLHVEGAASTSSSPSIKQVEINTIASSFGCLSTEVTRLHRYLVQKILGCTRLYTPSWFFPYNDTMRGLAHGLAMAHNEYMRQESCLSRPSTSSQHRRHPCVLMIVQPGERNINDQKLLEVALWEGFGVPLHRATLLEVAGEGHLDLQGRQNLLLKSPWVSEAEEKAGQGEEVEVTVAYFRAAYDPSDYPSEEEWKGRELIEMSAAIKCPCISYHLAGTKKVQEALSRPGELERFLKKPADVAAIRDCLMGLHGLEPGLAGAEEAVKAARASPEDFVLKPQREGGGHNLYGAELVEALVRLAPEERAAYILMEKIRPPPFDSHFVRDGQVLHGAAAFELGVYGVFLGDGECQRVLLNESVGHLLRTKLATSQEGGVAAGFAVLSSPLLVLSQEGGKWARRRQFAELQKYSMSGPAWRRKSSIWRRAVALSVFG-GVVLGFAAVAKAVDK 593
            D    L PRN+     L+ +ALG+ AT GLLM++A  +   S++  P+   + HAP+ LLPNA P  EYVKARRLA IWN LVAR+A+D  WLL+TL SVLPHD+FTRRLVEI+QAI+GAGRDVQKI LG+ RSDYMLH     S S SP +KQVEINTIA+SFGCLST+VTRLH+YLVQK+LG +RL + S+  P+N+TMRGLAHGLA AH EY+RQES + +PS  S+  R PCVLM+VQ  ERNINDQKLLE+ LWE FGV LHRATLLEVA   HLDLQ RQNLLL SP +S+  E+  Q  EVEVTVAYFRA YDPSDY SE EWKGRELIEMSAAIKCP IS+HLAGTKKVQEAL RPG LERFLK   DV AIR+C +GL+GL+P   GA  AV AA  SP+ FVLKPQREGGGHNLY  +LVEAL ++  EERAAYILMEKIRPPPF++ F+RD  VL G A  ELGVYGV+LGDGE +RV+LNESVGHLLRTKLA+S EGGVAAGFAVLSSPLLV   E      ++ F+ L++++MS   WRR+      A  ++ +G G+ L + AV+K   K
Sbjct:    8 DVALPLAPRNEEETTVLLQEALGMAATTGLLMRSAGGSRTDSAHVKPA---FCHAPVCLLPNALPVQEYVKARRLATIWNLLVARIAHDGPWLLQTLASVLPHDEFTRRLVEIFQAINGAGRDVQKIQLGITRSDYMLH--AGESGSGSPELKQVEINTIAASFGCLSTQVTRLHQYLVQKVLGHSRLSSKSFILPHNETMRGLAHGLAAAHKEYLRQESVMFKPSQPSRPGRRPCVLMLVQADERNINDQKLLEICLWEEFGVLLHRATLLEVARNAHLDLQRRQNLLLVSPLISDTGEEDVQEAEVEVTVAYFRAGYDPSDYSSEGEWKGRELIEMSAAIKCPSISHHLAGTKKVQEALCRPGVLERFLKDAEDVDAIRNCFVGLYGLDPECEGATAAVAAACNSPQHFVLKPQREGGGHNLYDQDLVEALSQMTAEERAAYILMEKIRPPPFEAFFLRDCSVLRGLAVLELGVYGVYLGDGEGKRVILNESVGHLLRTKLASSHEGGVAAGFAVLSSPLLVGGGEDSGILSKKYFSTLREFTMSARVWRRQRFWKIGATGIAFWGVGLFLTYIAVSKRSGK 586
The following BLAST results are available for this feature:
BLAST of NO13G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21915.14.900e-20464.73glutathione synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02400NO13G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02400.1NO13G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02400.1.cds1NO13G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02400.1 ID=NO13G02400.1|Name=NO13G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp
ATGACCTTGCGTGATGACACAGATGGAGACCCGACGTTCTTACTGGTCCC
GCGCAACGACAATGTGCGTGACGCGTTGGTGCATCAAGCGCTTGGCGTGA
CCGCAACAAATGGGCTGCTCATGCAAACTGCGACCAGGAACGCCGACAGC
AGCAGCAATGCCAACCCTTCCACACCGATGTACGGTCACGCACCCATAAG
CCTCCTTCCCAATGCCTTTCCCGCCCATGAGTACGTGAAGGCGCGGCGCT
TGGCTCCTATCTGGAACGAGCTTGTAGCACGGGTCGCGTATGACAGGGAG
TGGCTGCTGCGGACGCTTGAGAGCGTTTTGCCCCACGATGACTTTACAAG
GCGGCTGGTCGAAATCTATCAGGCAATCGATGGGGCAGGGCGGGACGTTC
AAAAAATACATTTGGGCGTGAATCGCAGCGACTACATGCTCCATGTCGAG
GGCGCGGCCTCGACATCGTCATCGCCGTCAATCAAACAAGTGGAGATCAA
TACCATTGCCTCGTCATTTGGCTGCTTGTCCACCGAGGTCACGCGCTTGC
ATCGGTATCTCGTCCAAAAAATACTAGGATGCACTCGCCTCTACACTCCT
TCCTGGTTTTTCCCCTACAATGACACAATGCGAGGCTTGGCGCACGGGTT
AGCCATGGCCCACAACGAATACATGCGGCAAGAATCTTGCCTGTCTAGGC
CGTCCACATCCTCCCAACATCGGCGGCACCCTTGCGTGCTCATGATTGTG
CAGCCTGGCGAACGCAATATCAATGACCAGAAATTGTTAGAAGTGGCGCT
GTGGGAAGGGTTCGGCGTCCCGTTGCACCGAGCCACGCTCCTGGAAGTAG
CAGGAGAGGGTCACTTGGACCTACAAGGTCGGCAAAACCTGCTGCTCAAA
TCGCCATGGGTCTCCGAAGCTGAGGAGAAGGCGGGGCAGGGAGAAGAGGT
AGAAGTCACGGTCGCTTACTTCAGGGCAGCTTATGACCCTAGTGACTACC
CAAGCGAAGAGGAATGGAAGGGAAGGGAGCTCATTGAAATGTCGGCAGCG
ATTAAATGTCCATGCATCTCCTACCATTTGGCCGGCACAAAGAAGGTACA
AGAGGCTCTAAGCAGACCAGGTGAGCTAGAACGCTTTCTCAAGAAACCTG
CGGACGTGGCAGCGATCCGGGATTGTCTTATGGGACTGCACGGATTAGAG
CCAGGTCTCGCAGGTGCCGAGGAAGCAGTGAAAGCGGCCCGTGCCAGCCC
GGAGGATTTTGTTCTCAAGCCACAGCGGGAGGGCGGCGGACATAATCTGT
ATGGAGCAGAGTTGGTCGAAGCCTTGGTAAGACTGGCGCCTGAGGAGCGC
GCGGCGTACATTTTGATGGAGAAGATTCGCCCTCCTCCCTTTGATTCGCA
TTTTGTGCGGGACGGGCAGGTTTTGCATGGGGCTGCCGCGTTCGAACTAG
GGGTGTATGGTGTATTTTTGGGGGATGGGGAGTGTCAACGGGTGCTTTTG
AATGAATCTGTCGGACATTTATTGCGGACCAAGCTGGCTACAAGTCAGGA
GGGCGGGGTGGCAGCAGGCTTTGCTGTTCTAAGCAGCCCTTTGCTGGTGT
TGTCGCAGGAGGGTGGGAAGTGGGCAAGAAGACGACAATTCGCGGAATTG
CAAAAGTATTCCATGTCAGGCCCTGCCTGGAGAAGAAAGTCGTCGATTTG
GAGAAGGGCGGTAGCGCTATCAGTTTTTGGGGGCGTAGTATTGGGGTTTG
CTGCCGTAGCCAAGGCAGTTGACAAGAGGAGAAGTAGGTGA
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protein sequence of NO13G02400.1

>NO13G02400.1-protein ID=NO13G02400.1-protein|Name=NO13G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MTLRDDTDGDPTFLLVPRNDNVRDALVHQALGVTATNGLLMQTATRNADS
SSNANPSTPMYGHAPISLLPNAFPAHEYVKARRLAPIWNELVARVAYDRE
WLLRTLESVLPHDDFTRRLVEIYQAIDGAGRDVQKIHLGVNRSDYMLHVE
GAASTSSSPSIKQVEINTIASSFGCLSTEVTRLHRYLVQKILGCTRLYTP
SWFFPYNDTMRGLAHGLAMAHNEYMRQESCLSRPSTSSQHRRHPCVLMIV
QPGERNINDQKLLEVALWEGFGVPLHRATLLEVAGEGHLDLQGRQNLLLK
SPWVSEAEEKAGQGEEVEVTVAYFRAAYDPSDYPSEEEWKGRELIEMSAA
IKCPCISYHLAGTKKVQEALSRPGELERFLKKPADVAAIRDCLMGLHGLE
PGLAGAEEAVKAARASPEDFVLKPQREGGGHNLYGAELVEALVRLAPEER
AAYILMEKIRPPPFDSHFVRDGQVLHGAAAFELGVYGVFLGDGECQRVLL
NESVGHLLRTKLATSQEGGVAAGFAVLSSPLLVLSQEGGKWARRRQFAEL
QKYSMSGPAWRRKSSIWRRAVALSVFGGVVLGFAAVAKAVDKRRSR*
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mRNA from alignment at chr13:665598..667388+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02400.1 ID=NO13G02400.1|Name=NO13G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at chr13:665598..667388+ (Nannochloropsis oceanica)
ATGACCTTGCGTGATGACACAGATGGAGACCCGACGTTCTTACTGGTCCC
GCGCAACGACAATGTGCGTGACGCGTTGGTGCATCAAGCGCTTGGCGTGA
CCGCAACAAATGGGCTGCTCATGCAAACTGCGACCAGGAACGCCGACAGC
AGCAGCAATGCCAACCCTTCCACACCGATGTACGGTCACGCACCCATAAG
CCTCCTTCCCAATGCCTTTCCCGCCCATGAGTACGTGAAGGCGCGGCGCT
TGGCTCCTATCTGGAACGAGCTTGTAGCACGGGTCGCGTATGACAGGGAG
TGGCTGCTGCGGACGCTTGAGAGCGTTTTGCCCCACGATGACTTTACAAG
GCGGCTGGTCGAAATCTATCAGGCAATCGATGGGGCAGGGCGGGACGTTC
AAAAAATACATTTGGGCGTGAATCGCAGCGACTACATGCTCCATGTCGAG
GGCGCGGCCTCGACATCGTCATCGCCGTCAATCAAACAAGTGGAGATCAA
TACCATTGCCTCGTCATTTGGCTGCTTGTCCACCGAGGTCACGCGCTTGC
ATCGGTATCTCGTCCAAAAAATACTAGGATGCACTCGCCTCTACACTCCT
TCCTGGTTTTTCCCCTACAATGACACAATGCGAGGCTTGGCGCACGGGTT
AGCCATGGCCCACAACGAATACATGCGGCAAGAATCTTGCCTGTCTAGGC
CGTCCACATCCTCCCAACATCGGCGGCACCCTTGCGTGCTCATGATTGTG
CAGCCTGGCGAACGCAATATCAATGACCAGAAATTGTTAGAAGTGGCGCT
GTGGGAAGGGTTCGGCGTCCCGTTGCACCGAGCCACGCTCCTGGAAGTAG
CAGGAGAGGGTCACTTGGACCTACAAGGTCGGCAAAACCTGCTGCTCAAA
TCGCCATGGGTCTCCGAAGCTGAGGAGAAGGCGGGGCAGGGAGAAGAGGT
AGAAGTCACGGTCGCTTACTTCAGGGCAGCTTATGACCCTAGTGACTACC
CAAGCGAAGAGGAATGGAAGGGAAGGGAGCTCATTGAAATGTCGGCAGCG
ATTAAATGTCCATGCATCTCCTACCATTTGGCCGGCACAAAGAAGGTACA
AGAGGCTCTAAGCAGACCAGGTGAGCTAGAACGCTTTCTCAAGAAACCTG
CGGACGTGGCAGCGATCCGGGATTGTCTTATGGGACTGCACGGATTAGAG
CCAGGTCTCGCAGGTGCCGAGGAAGCAGTGAAAGCGGCCCGTGCCAGCCC
GGAGGATTTTGTTCTCAAGCCACAGCGGGAGGGCGGCGGACATAATCTGT
ATGGAGCAGAGTTGGTCGAAGCCTTGGTAAGACTGGCGCCTGAGGAGCGC
GCGGCGTACATTTTGATGGAGAAGATTCGCCCTCCTCCCTTTGATTCGCA
TTTTGTGCGGGACGGGCAGGTTTTGCATGGGGCTGCCGCGTTCGAACTAG
GGGTGTATGGTGTATTTTTGGGGGATGGGGAGTGTCAACGGGTGCTTTTG
AATGAATCTGTCGGACATTTATTGCGGACCAAGCTGGCTACAAGTCAGGA
GGGCGGGGTGGCAGCAGGCTTTGCTGTTCTAAGCAGCCCTTTGCTGGTGT
TGTCGCAGGAGGGTGGGAAGTGGGCAAGAAGACGACAATTCGCGGAATTG
CAAAAGTATTCCATGTCAGGCCCTGCCTGGAGAAGAAAGTCGTCGATTTG
GAGAAGGGCGGTAGCGCTATCAGTTTTTGGGGGCGTAGTATTGGGGTTTG
CTGCCGTAGCCAAGGCAGTTGACAAGAGGAGAAGTAGGTGA
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Coding sequence (CDS) from alignment at chr13:665598..667388+

>NO13G02400.1 ID=NO13G02400.1|Name=NO13G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1791bp|location=Sequence derived from alignment at chr13:665598..667388+ (Nannochloropsis oceanica)
ATGACCTTGCGTGATGACACAGATGGAGACCCGACGTTCTTACTGGTCCC
GCGCAACGACAATGTGCGTGACGCGTTGGTGCATCAAGCGCTTGGCGTGA
CCGCAACAAATGGGCTGCTCATGCAAACTGCGACCAGGAACGCCGACAGC
AGCAGCAATGCCAACCCTTCCACACCGATGTACGGTCACGCACCCATAAG
CCTCCTTCCCAATGCCTTTCCCGCCCATGAGTACGTGAAGGCGCGGCGCT
TGGCTCCTATCTGGAACGAGCTTGTAGCACGGGTCGCGTATGACAGGGAG
TGGCTGCTGCGGACGCTTGAGAGCGTTTTGCCCCACGATGACTTTACAAG
GCGGCTGGTCGAAATCTATCAGGCAATCGATGGGGCAGGGCGGGACGTTC
AAAAAATACATTTGGGCGTGAATCGCAGCGACTACATGCTCCATGTCGAG
GGCGCGGCCTCGACATCGTCATCGCCGTCAATCAAACAAGTGGAGATCAA
TACCATTGCCTCGTCATTTGGCTGCTTGTCCACCGAGGTCACGCGCTTGC
ATCGGTATCTCGTCCAAAAAATACTAGGATGCACTCGCCTCTACACTCCT
TCCTGGTTTTTCCCCTACAATGACACAATGCGAGGCTTGGCGCACGGGTT
AGCCATGGCCCACAACGAATACATGCGGCAAGAATCTTGCCTGTCTAGGC
CGTCCACATCCTCCCAACATCGGCGGCACCCTTGCGTGCTCATGATTGTG
CAGCCTGGCGAACGCAATATCAATGACCAGAAATTGTTAGAAGTGGCGCT
GTGGGAAGGGTTCGGCGTCCCGTTGCACCGAGCCACGCTCCTGGAAGTAG
CAGGAGAGGGTCACTTGGACCTACAAGGTCGGCAAAACCTGCTGCTCAAA
TCGCCATGGGTCTCCGAAGCTGAGGAGAAGGCGGGGCAGGGAGAAGAGGT
AGAAGTCACGGTCGCTTACTTCAGGGCAGCTTATGACCCTAGTGACTACC
CAAGCGAAGAGGAATGGAAGGGAAGGGAGCTCATTGAAATGTCGGCAGCG
ATTAAATGTCCATGCATCTCCTACCATTTGGCCGGCACAAAGAAGGTACA
AGAGGCTCTAAGCAGACCAGGTGAGCTAGAACGCTTTCTCAAGAAACCTG
CGGACGTGGCAGCGATCCGGGATTGTCTTATGGGACTGCACGGATTAGAG
CCAGGTCTCGCAGGTGCCGAGGAAGCAGTGAAAGCGGCCCGTGCCAGCCC
GGAGGATTTTGTTCTCAAGCCACAGCGGGAGGGCGGCGGACATAATCTGT
ATGGAGCAGAGTTGGTCGAAGCCTTGGTAAGACTGGCGCCTGAGGAGCGC
GCGGCGTACATTTTGATGGAGAAGATTCGCCCTCCTCCCTTTGATTCGCA
TTTTGTGCGGGACGGGCAGGTTTTGCATGGGGCTGCCGCGTTCGAACTAG
GGGTGTATGGTGTATTTTTGGGGGATGGGGAGTGTCAACGGGTGCTTTTG
AATGAATCTGTCGGACATTTATTGCGGACCAAGCTGGCTACAAGTCAGGA
GGGCGGGGTGGCAGCAGGCTTTGCTGTTCTAAGCAGCCCTTTGCTGGTGT
TGTCGCAGGAGGGTGGGAAGTGGGCAAGAAGACGACAATTCGCGGAATTG
CAAAAGTATTCCATGTCAGGCCCTGCCTGGAGAAGAAAGTCGTCGATTTG
GAGAAGGGCGGTAGCGCTATCAGTTTTTGGGGGCGTAGTATTGGGGTTTG
CTGCCGTAGCCAAGGCAGTTGACAAGAGGAGAAGTAGGTGA
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Synonyms
Publications