NO13G02370.1, NO13G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02370.1
Unique NameNO13G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1311
Alignment locationchr13:656726..658036 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:656726..658036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02370.1 vs.
Match: EWM21900.1 (Mitochondrial biogenesis protein AIM24, partial [Nannochloropsis gaditana])

HSP 1 Score: 518.8 bits (1335), Expect = 1.600e-143
Identity = 292/404 (72.28%), Postives = 331/404 (81.93%), Query Frame = 0 
Query:    1 MLVPAMRHSGGRGIISLTRSRLSAQRILTQLVTPKPASRAPEAFLGGVVIARRSIFNGLSGADKDKALLAKKQDEELALAKPIDFDVSSRIEGAETQIVMVDLEPGQILRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGESMFISDFKYHGEEGTAGTVALGTEFPSKVIRVTLADYGGALICQKGAFLCGTHLTGMEMEFTKSFKTGFFGGEGFVLQRLTGQGDAFIKAGGALIRRELAEGETLRVTSGALVAFAPSVSYDVQMMKGVKNVMFGGEGLFMTSLTGPGTVFLQSMPFDRVVASIASRVPRGGGLGMGVPIGMGAGGAGAGDEGGEDGEG--GEEGDDSGMGSTSSSSSAAAGEGFGGTNTGGSSSS-SGSEAPGEQGGEEVWGEEKGEEA 402
            MLV A+  +G RG     R+  +   ++T+ V  +PAS +     G    A RSIF+ LSGAD+ +AL  K+ +++ ALAKPIDFDV+SR+EGAETQIV+VDLEPGQ+LRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGE+MFISDFKYHG EG++GTVALGTEFPSK+IRVTLADYGG+LICQKGAFLCGTHLTGMEMEFT+SFK GFFGGEGFVLQRLTG GDAFIKAGGALIRREL+EGETLRVTSG+LV FAPSV YDV+M+KGVKNVMFGGEGLF+T+LTGPG VFLQSMPFDRVVASIASRVPR GGLG+GVPIGMGAGG G   EG  +GEG  G EG D       +SS+AAAG G GGT++G SS   S    PG  G EEVWGEE+G  A
Sbjct:    1 MLVRALLRTGNRGTHCAQRAHGTGHPLITRCVIRRPASPSLAMLAGPAGCASRSIFSMLSGADRTRALAKKEAEDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGAVFLQSMPFDRVVASIASRVPR-GGLGLGVPIGMGAGGGGGEGEGEGEGEGQAGGEGAD-------ASSAAAAGAGLGGTSSGMSSGGVSEGTVPGSSGSEEVWGEERGGPA 396
The following BLAST results are available for this feature:
BLAST of NO13G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21900.11.600e-14372.28Mitochondrial biogenesis protein AIM24, partial [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02370NO13G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02370.1NO13G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02370.1.cds1NO13G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02370.1 ID=NO13G02370.1|Name=NO13G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp
ATGCTGGTCCCCGCGATGCGCCACAGTGGTGGCCGCGGCATAATCTCTTT
AACACGTAGTCGCCTCTCCGCTCAACGAATTCTTACGCAACTGGTGACCC
CAAAACCAGCTTCCAGAGCGCCGGAGGCTTTCCTAGGGGGCGTCGTCATC
GCACGTCGGAGCATCTTCAATGGCCTGAGCGGGGCAGACAAGGATAAGGC
TCTGCTGGCAAAGAAGCAAGATGAGGAGTTAGCGTTGGCCAAACCAATCG
ATTTTGACGTGTCCTCTCGGATCGAAGGCGCCGAGACGCAGATAGTCATG
GTCGACCTCGAACCCGGGCAGATTTTGAGAGCAGAAACGGGCTCGTTGTT
GTACATGACAGACGGTGTAGAGTTGGAGACTTCTCTTGGCGGGGGGCTGT
CGGCAGGACTTAAACGATACATGACTGGTGAAAGCATGTTCATCTCCGAC
TTCAAATACCATGGGGAGGAGGGCACCGCGGGTACGGTGGCGCTAGGTAC
GGAATTCCCTAGTAAGGTGATCCGAGTCACACTGGCTGATTACGGCGGCG
CGCTCATTTGTCAAAAGGGTGCATTTTTGTGTGGGACACATTTGACTGGG
ATGGAGATGGAGTTCACAAAAAGCTTCAAGACTGGGTTCTTCGGTGGGGA
AGGTTTTGTGTTGCAGCGGCTGACAGGGCAAGGCGACGCGTTTATCAAGG
CCGGAGGCGCTCTGATTCGACGGGAGCTGGCCGAGGGAGAGACGTTGCGG
GTTACCTCCGGAGCGCTTGTAGCATTCGCTCCTAGCGTGAGTTACGACGT
CCAAATGATGAAGGGCGTGAAGAATGTGATGTTTGGGGGTGAGGGTTTGT
TTATGACTTCGCTTACGGGGCCGGGCACTGTTTTCTTGCAGAGCATGCCT
TTTGACCGTGTGGTCGCTTCCATCGCTTCCAGGGTTCCGCGCGGAGGAGG
ACTGGGGATGGGCGTTCCGATTGGTATGGGGGCTGGGGGAGCAGGCGCTG
GCGACGAAGGGGGAGAGGATGGTGAGGGAGGGGAGGAAGGGGATGATAGT
GGGATGGGCTCCACATCGTCCTCGTCTTCTGCGGCAGCGGGAGAGGGATT
TGGGGGGACTAACACGGGGGGGAGTAGTAGTAGTAGTGGCAGTGAGGCAC
CAGGCGAGCAAGGTGGGGAAGAAGTGTGGGGAGAAGAGAAGGGGGAGGAG
GCGGGCGAGATGCCGGAGGAAGTAGGGGAGGAAGCGCAGGAAGCGTTTGC
GGATTCGGGCGTTCGTGAGGTCCTTAATGATATTTGGAGCACTGTCTGGG
GGGACAGATAA
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protein sequence of NO13G02370.1

>NO13G02370.1-protein ID=NO13G02370.1-protein|Name=NO13G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MLVPAMRHSGGRGIISLTRSRLSAQRILTQLVTPKPASRAPEAFLGGVVI
ARRSIFNGLSGADKDKALLAKKQDEELALAKPIDFDVSSRIEGAETQIVM
VDLEPGQILRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGESMFISD
FKYHGEEGTAGTVALGTEFPSKVIRVTLADYGGALICQKGAFLCGTHLTG
MEMEFTKSFKTGFFGGEGFVLQRLTGQGDAFIKAGGALIRRELAEGETLR
VTSGALVAFAPSVSYDVQMMKGVKNVMFGGEGLFMTSLTGPGTVFLQSMP
FDRVVASIASRVPRGGGLGMGVPIGMGAGGAGAGDEGGEDGEGGEEGDDS
GMGSTSSSSSAAAGEGFGGTNTGGSSSSSGSEAPGEQGGEEVWGEEKGEE
AGEMPEEVGEEAQEAFADSGVREVLNDIWSTVWGDR*
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mRNA from alignment at chr13:656726..658036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02370.1 ID=NO13G02370.1|Name=NO13G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp|location=Sequence derived from alignment at chr13:656726..658036- (Nannochloropsis oceanica)
ATGCTGGTCCCCGCGATGCGCCACAGTGGTGGCCGCGGCATAATCTCTTT
AACACGTAGTCGCCTCTCCGCTCAACGAATTCTTACGCAACTGGTGACCC
CAAAACCAGCTTCCAGAGCGCCGGAGGCTTTCCTAGGGGGCGTCGTCATC
GCACGTCGGAGCATCTTCAATGGCCTGAGCGGGGCAGACAAGGATAAGGC
TCTGCTGGCAAAGAAGCAAGATGAGGAGTTAGCGTTGGCCAAACCAATCG
ATTTTGACGTGTCCTCTCGGATCGAAGGCGCCGAGACGCAGATAGTCATG
GTCGACCTCGAACCCGGGCAGATTTTGAGAGCAGAAACGGGCTCGTTGTT
GTACATGACAGACGGTGTAGAGTTGGAGACTTCTCTTGGCGGGGGGCTGT
CGGCAGGACTTAAACGATACATGACTGGTGAAAGCATGTTCATCTCCGAC
TTCAAATACCATGGGGAGGAGGGCACCGCGGGTACGGTGGCGCTAGGTAC
GGAATTCCCTAGTAAGGTGATCCGAGTCACACTGGCTGATTACGGCGGCG
CGCTCATTTGTCAAAAGGGTGCATTTTTGTGTGGGACACATTTGACTGGG
ATGGAGATGGAGTTCACAAAAAGCTTCAAGACTGGGTTCTTCGGTGGGGA
AGGTTTTGTGTTGCAGCGGCTGACAGGGCAAGGCGACGCGTTTATCAAGG
CCGGAGGCGCTCTGATTCGACGGGAGCTGGCCGAGGGAGAGACGTTGCGG
GTTACCTCCGGAGCGCTTGTAGCATTCGCTCCTAGCGTGAGTTACGACGT
CCAAATGATGAAGGGCGTGAAGAATGTGATGTTTGGGGGTGAGGGTTTGT
TTATGACTTCGCTTACGGGGCCGGGCACTGTTTTCTTGCAGAGCATGCCT
TTTGACCGTGTGGTCGCTTCCATCGCTTCCAGGGTTCCGCGCGGAGGAGG
ACTGGGGATGGGCGTTCCGATTGGTATGGGGGCTGGGGGAGCAGGCGCTG
GCGACGAAGGGGGAGAGGATGGTGAGGGAGGGGAGGAAGGGGATGATAGT
GGGATGGGCTCCACATCGTCCTCGTCTTCTGCGGCAGCGGGAGAGGGATT
TGGGGGGACTAACACGGGGGGGAGTAGTAGTAGTAGTGGCAGTGAGGCAC
CAGGCGAGCAAGGTGGGGAAGAAGTGTGGGGAGAAGAGAAGGGGGAGGAG
GCGGGCGAGATGCCGGAGGAAGTAGGGGAGGAAGCGCAGGAAGCGTTTGC
GGATTCGGGCGTTCGTGAGGTCCTTAATGATATTTGGAGCACTGTCTGGG
GGGACAGATAA
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Coding sequence (CDS) from alignment at chr13:656726..658036-

>NO13G02370.1 ID=NO13G02370.1|Name=NO13G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr13:656726..658036- (Nannochloropsis oceanica)
ATGCTGGTCCCCGCGATGCGCCACAGTGGTGGCCGCGGCATAATCTCTTT
AACACGTAGTCGCCTCTCCGCTCAACGAATTCTTACGCAACTGGTGACCC
CAAAACCAGCTTCCAGAGCGCCGGAGGCTTTCCTAGGGGGCGTCGTCATC
GCACGTCGGAGCATCTTCAATGGCCTGAGCGGGGCAGACAAGGATAAGGC
TCTGCTGGCAAAGAAGCAAGATGAGGAGTTAGCGTTGGCCAAACCAATCG
ATTTTGACGTGTCCTCTCGGATCGAAGGCGCCGAGACGCAGATAGTCATG
GTCGACCTCGAACCCGGGCAGATTTTGAGAGCAGAAACGGGCTCGTTGTT
GTACATGACAGACGGTGTAGAGTTGGAGACTTCTCTTGGCGGGGGGCTGT
CGGCAGGACTTAAACGATACATGACTGGTGAAAGCATGTTCATCTCCGAC
TTCAAATACCATGGGGAGGAGGGCACCGCGGGTACGGTGGCGCTAGGTAC
GGAATTCCCTAGTAAGGTGATCCGAGTCACACTGGCTGATTACGGCGGCG
CGCTCATTTGTCAAAAGGGTGCATTTTTGTGTGGGACACATTTGACTGGG
ATGGAGATGGAGTTCACAAAAAGCTTCAAGACTGGGTTCTTCGGTGGGGA
AGGTTTTGTGTTGCAGCGGCTGACAGGGCAAGGCGACGCGTTTATCAAGG
CCGGAGGCGCTCTGATTCGACGGGAGCTGGCCGAGGGAGAGACGTTGCGG
GTTACCTCCGGAGCGCTTGTAGCATTCGCTCCTAGCGTGAGTTACGACGT
CCAAATGATGAAGGGCGTGAAGAATGTGATGTTTGGGGGTGAGGGTTTGT
TTATGACTTCGCTTACGGGGCCGGGCACTGTTTTCTTGCAGAGCATGCCT
TTTGACCGTGTGGTCGCTTCCATCGCTTCCAGGGTTCCGCGCGGAGGAGG
ACTGGGGATGGGCGTTCCGATTGGTATGGGGGCTGGGGGAGCAGGCGCTG
GCGACGAAGGGGGAGAGGATGGTGAGGGAGGGGAGGAAGGGGATGATAGT
GGGATGGGCTCCACATCGTCCTCGTCTTCTGCGGCAGCGGGAGAGGGATT
TGGGGGGACTAACACGGGGGGGAGTAGTAGTAGTAGTGGCAGTGAGGCAC
CAGGCGAGCAAGGTGGGGAAGAAGTGTGGGGAGAAGAGAAGGGGGAGGAG
GCGGGCGAGATGCCGGAGGAAGTAGGGGAGGAAGCGCAGGAAGCGTTTGC
GGATTCGGGCGTTCGTGAGGTCCTTAATGATATTTGGAGCACTGTCTGGG
GGGACAGATAA
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Synonyms
Publications