NO13G02310.1, NO13G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02310.1
Unique NameNO13G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2304
Alignment locationchr13:639703..642280 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:639703..642280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02310.1 vs.
Match: EWM21890.1 (werner syndrome exonuclease [Nannochloropsis gaditana])

HSP 1 Score: 360.1 bits (923), Expect = 1.100e-95
Identity = 190/332 (57.23%), Postives = 238/332 (71.69%), Query Frame = 0
Query:   79 LQSADTDVPIAEYLEGGQLSIDSIP---TRMVEIPCPFSHSGPRQYETVKVAVIQDTTCANYWCSRLAHVLRKESGPDGGGGAVGLDLEWKPTFRARQAASRAAVLQLSGPGLCLVIQLQQLRHVPRQLRQILADPTLLKVGVSVDDDLAKLRRDWGMVSSGYVDVGRVGGRLFFHDNPFRTMSVQNMAASLWGIDLPKSDAIRLGNWEHPELSTKQVEYAALDAMAGRAIYQEFYRRGLLDRGMLKEMMETWLISSEDDNRKRARSLALESDVLRRLYTRLQGESPSKSRSSAASRSSSSVKPRKRSSGPQGKSRNVVSRNSGSSSIRSSS 408
            L S   + P+AEY+EGG LS  S     TRM+E+ CPFS+   R  ETVKVAVIQ TT ANYWC RL H +RKE GP GG GA+GLD+EW+P+F+  Q A R+A+LQLSGPGLCL+IQLQ+L H+PRQL ++L DPTL KVGVSV++DLA+LR DWG+ S  +VDVGRVGGR+F    PFR +S+Q +  +LWGI LPK  +IRLGNWE PELS++QVEYAALDAMAGRAIYQ F+RRGLLD+  L+E+M  W +SS++ + KRARSLALESD+LR LY R  G  P++ R+      S ++    +  G     R      SG S  R S+
Sbjct:   58 LHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGR--ETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGST 387          
The following BLAST results are available for this feature:
BLAST of NO13G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21890.11.100e-9557.23werner syndrome exonuclease [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02310NO13G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02310.1NO13G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02310.1.cds1NO13G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02310.1.cds2NO13G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02310.1 ID=NO13G02310.1|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp
GGGCAAATATGACGACAATACATGAATGTGCGACAGGAGTCCAGTCTATT
TTATAATAGAGGGCGCGTCCGGTGGTTGTCGCGGCATGAAAAGCCGTGCG
AATGCGGCAAAGGGAGACAAACAAACGTTTTTGGTAGTTTGAATACCCGT
CTCGTGGGGTTAGTGGCCGGGAGCAACCTTGGAGCAGGGACAGACCCGAC
GCTGTAGAAGAACCGCTTGACTTGGTGATGGTGGGGATTTAAGGCTGGTT
TGTCGTTTTCGTATAAAGAGAAAATACTCAAGCACCGTGACATCCACAAG
GGCTCTTTATGTCTCCTTCCGCTCCTTGCGGCTTGATACTTATGCTTTTT
GTGATCATTCAACCCTGCACAAATGGTCTGGGTGTGTCATGTGTGATGAG
GTGAGCGCAACAGGGTTGCTGGGTTTGCCCCGAAAACTGTATCTTTGCAG
ACCATCACCAGACATGACGATCACCACAGCCATTACACAGTTTCTATCAT
AAGAAGTGGCTCGGGATGGGGTGTAGTGGTTTGTTAGAGGCCTCCAAGCT
ATGTCATAAATGAACGCCAACATGAAGGAGCAAATTTGTTTTCGGTGCAT
CAGCAGACGCCGTTCAACACGGAGAGAGATTTTGGGCCCAGCAAGCAGCC
TATGTACCACAATATATGCATACATTTCACAGGCTCCCCATGCTACCCTT
GGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCCGCATTACAGTCGC
TCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTCCTCTATCCTTCCT
GACGCAGCAGCCGCAGACGACGCCGATGCCACCATTCCCACGGTCCGCAT
GTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCGTCTGTCCACATAC
TTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTACTTGGAGGGTGGA
CAATTGTCTATAGACAGCATCCCCACGCGCATGGTTGAAATCCCCTGTCC
CTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTAAAGGTCGCTGTCA
TCCAAGACACGACCTGCGCCAACTACTGGTGCTCCCGCCTCGCTCACGTA
CTGCGAAAGGAATCCGGCCCCGACGGTGGCGGCGGTGCTGTGGGGCTCGA
TTTGGAATGGAAGCCTACCTTTCGTGCACGGCAAGCTGCCTCCCGCGCCG
CCGTATTACAGTTGTCCGGGCCTGGACTCTGCCTGGTCATCCAGCTACAG
CAGCTCAGGCACGTTCCGCGGCAGCTTCGTCAGATTTTGGCGGATCCAAC
GCTGTTAAAAGTAGGGGTATCAGTCGATGATGATTTGGCCAAACTTCGGC
GTGACTGGGGTATGGTTTCCAGTGGGTACGTGGACGTCGGACGGGTAGGA
GGACGGCTTTTCTTCCATGACAACCCATTCCGCACCATGTCCGTGCAAAA
CATGGCGGCCTCGTTGTGGGGTATCGATTTACCCAAGTCGGACGCGATTC
GATTGGGGAATTGGGAGCACCCGGAGCTGTCGACGAAGCAAGTAGAGTAC
GCGGCCTTGGACGCTATGGCGGGACGGGCGATTTACCAAGAGTTTTACCG
GAGGGGCCTGCTGGACAGGGGCATGCTGAAGGAGATGATGGAAACGTGGT
TGATTTCTTCAGAGGACGACAATAGAAAGCGTGCGAGGAGTTTGGCGTTG
GAATCGGATGTGCTTCGGAGGTTGTACACGCGCCTCCAGGGCGAGTCGCC
TTCCAAGTCCCGGTCCTCCGCGGCGTCACGCTCTTCGAGTTCTGTGAAGC
CTAGGAAGAGGTCATCAGGACCCCAGGGAAAGAGCAGAAATGTTGTCAGT
AGGAATAGTGGCAGTAGTAGTATTAGAAGTAGTAGTAATAGTAGTAATAG
TAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTAA
TAGTAGTAGCAGCAGCAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGGA
GCAGCAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCCAGAGTACCCCT
GAACTTTTGCCCGACATTGCCGTGGCTTACAAAGCACTGAATGGCACGTG
ACGTTGACGGATAGTGTGAATAGAAGTGAGAAGTGCGACAAGGCATGCAA
GTATGATGACGACATAATGTAAGTAAAGAAACGAACTCTGGCTGGCGAGC
GTGA
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protein sequence of NO13G02310.1

>NO13G02310.1-protein ID=NO13G02310.1-protein|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MHTFHRLPMLPLALRRGSAAVRLPALQSLYPPLHLLRRSTSSILPDAAAA
DDADATIPTVRMYKSNELDAVATPSVHILQSADTDVPIAEYLEGGQLSID
SIPTRMVEIPCPFSHSGPRQYETVKVAVIQDTTCANYWCSRLAHVLRKES
GPDGGGGAVGLDLEWKPTFRARQAASRAAVLQLSGPGLCLVIQLQQLRHV
PRQLRQILADPTLLKVGVSVDDDLAKLRRDWGMVSSGYVDVGRVGGRLFF
HDNPFRTMSVQNMAASLWGIDLPKSDAIRLGNWEHPELSTKQVEYAALDA
MAGRAIYQEFYRRGLLDRGMLKEMMETWLISSEDDNRKRARSLALESDVL
RRLYTRLQGESPSKSRSSAASRSSSSVKPRKRSSGPQGKSRNVVSRNSGS
SSIRSSSNSSNSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSRSSSNSSSSSSSRSSKSSSNRSSSKCRDAPVISSQSTPELLPD
IAVAYKALNGT*
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mRNA from alignment at chr13:639703..642280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02310.1 ID=NO13G02310.1|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp|location=Sequence derived from alignment at chr13:639703..642280- (Nannochloropsis oceanica)
GGGCAAATATGACGACAATACATGAATGTGCGACAGGAGTCCAGTCTATT TTATAATAGAGGGCGCGTCCGGTGGTTGTCGCGGCATGAAAAGCCGTGCG AATGCGGCAAAGGGAGACAAACAAACGTTTTTGGTAGTTTGAATACCCGT CTCGTGGGGTTAGTGGCCGGGAGCAACCTTGGAGCAGGGACAGACCCGAC GCTGTAGAAGAACCGCTTGACTTGGTGATGGTGGGGATTTAAGGCTGGTT TGTCGTTTTCGTATAAAGAGAAAATACTCAAGCACCGTGACATCCACAAG GGCTCTTTATGTCTCCTTCCGCTCCTTGCGGCTTGATACTTATGCTTTTT GTGATCATTCAACCCTGCACAAATGGTCTGGGTGTGTCATGTGTGATGAG GTGAGCGCAACAGGGTTGCTGGGTTTGCCCCGAAAACTGTATCTTTGCAG ACCATCACCAGACATGACGATCACCACAGCCATTACACAGTTTCTATCAT AAGAAGTGGCTCGGGATGGGGTGTAGTGGTTTGTTAGAGGCCTCCAAGCT ATGTCATAAATGAACGCCAACATGAAGGAGCAAATTTGTTTTCGGTGCAT CAGCAGACGCCGTTCAACACGGAGAGAGATTTTGGGCCCAGCAAGCAGCC TATGTACCACAATATATGCATACATTTCACAGGCTCCCCATGCTACCCTT GGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCCGCATTACAGTCGC TCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTCCTCTATCCTTCCT GACGCAGCAGCCGCAGACGACGCCGATGCCACCATTCCCACGGTCCGCAT GTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCGTCTGTCCACATAC TTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTACTTGGAGGGTGGA CAATTGTCTATAGACAGCATCCCCACGCGCATGGTTGAAATCCCCTGTCC CTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTAAAGGTAGGTGTAG ATAAATCATTCGTGTTTGGCATAGAGGGATTTGGTGGTACGGCCGCGATA CTTTACCACAACAATCAAGCAATACATTTGATCTCGGTTATCTTCTGTTC TTGATTTTAACCTGTCCAGCATCCTCACCACAAAAGATTTGAAAGGCCCG TGGAGCAGCTTGAAGATCCGGCATGTTTGATATTTTAGGATTTTTCCCAC CTGCGTCATGTCGACGTCCTCACCTACTTCCTTCCTTCTTCTCTTCCTCT GCCTCTTTCACTAGGTCGCTGTCATCCAAGACACGACCTGCGCCAACTAC TGGTGCTCCCGCCTCGCTCACGTACTGCGAAAGGAATCCGGCCCCGACGG TGGCGGCGGTGCTGTGGGGCTCGATTTGGAATGGAAGCCTACCTTTCGTG CACGGCAAGCTGCCTCCCGCGCCGCCGTATTACAGTTGTCCGGGCCTGGA CTCTGCCTGGTCATCCAGCTACAGCAGCTCAGGCACGTTCCGCGGCAGCT TCGTCAGATTTTGGCGGATCCAACGCTGTTAAAAGTAGGGGTATCAGTCG ATGATGATTTGGCCAAACTTCGGCGTGACTGGGGTATGGTTTCCAGTGGG TACGTGGACGTCGGACGGGTAGGAGGACGGCTTTTCTTCCATGACAACCC ATTCCGCACCATGTCCGTGCAAAACATGGCGGCCTCGTTGTGGGGTATCG ATTTACCCAAGTCGGACGCGATTCGATTGGGGAATTGGGAGCACCCGGAG CTGTCGACGAAGCAAGTAGAGTACGCGGCCTTGGACGCTATGGCGGGACG GGCGATTTACCAAGAGTTTTACCGGAGGGGCCTGCTGGACAGGGGCATGC TGAAGGAGATGATGGAAACGTGGTTGATTTCTTCAGAGGACGACAATAGA AAGCGTGCGAGGAGTTTGGCGTTGGAATCGGATGTGCTTCGGAGGTTGTA CACGCGCCTCCAGGGCGAGTCGCCTTCCAAGTCCCGGTCCTCCGCGGCGT CACGCTCTTCGAGTTCTGTGAAGCCTAGGAAGAGGTCATCAGGACCCCAG GGAAAGAGCAGAAATGTTGTCAGTAGGAATAGTGGCAGTAGTAGTATTAG AAGTAGTAGTAATAGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAGTA GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG TAGTAGTAGTAGAAGTAGTAGTAATAGTAGTAGCAGCAGCAGCAGCAGAA GCAGCAAGAGCAGCAGCAACAGGAGCAGCAGCAAATGTAGAGACGCTCCT GTCATTTCTAGCCAGAGTACCCCTGAACTTTTGCCCGACATTGCCGTGGC TTACAAAGCACTGAATGGCACGTGACGTTGACGGATAGTGTGAATAGAAG TGAGAAGTGCGACAAGGCATGCAAGTATGATGACGACATAATGTAAGTAA AGAAACGAACTCTGGCTGGCGAGCGTGA
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Coding sequence (CDS) from alignment at chr13:639703..642280-

>NO13G02310.1 ID=NO13G02310.1|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr13:639703..642280- (Nannochloropsis oceanica)
ATGCATACATTTCACAGGCTCCCCATGCTACCCTTGGCACTACGACGGGG
CTCTGCTGCAGTGCGTCTGCCCGCATTACAGTCGCTCTATCCACCGCTCC
ACTTGCTTCGACGGTCGACCTCCTCTATCCTTCCTGACGCAGCAGCCGCA
GACGACGCCGATGCCACCATTCCCACGGTCCGCATGTACAAGTCTAATGA
ACTAGATGCTGTAGCCACTCCGTCTGTCCACATACTTCAAAGTGCCGACA
CCGATGTGCCCATTGCCGAGTACTTGGAGGGTGGACAATTGTCTATAGAC
AGCATCCCCACGCGCATGGTTGAAATCCCCTGTCCCTTTTCCCACAGTGG
CCCACGTCAATACGAGACGGTAAAGGTCGCTGTCATCCAAGACACGACCT
GCGCCAACTACTGGTGCTCCCGCCTCGCTCACGTACTGCGAAAGGAATCC
GGCCCCGACGGTGGCGGCGGTGCTGTGGGGCTCGATTTGGAATGGAAGCC
TACCTTTCGTGCACGGCAAGCTGCCTCCCGCGCCGCCGTATTACAGTTGT
CCGGGCCTGGACTCTGCCTGGTCATCCAGCTACAGCAGCTCAGGCACGTT
CCGCGGCAGCTTCGTCAGATTTTGGCGGATCCAACGCTGTTAAAAGTAGG
GGTATCAGTCGATGATGATTTGGCCAAACTTCGGCGTGACTGGGGTATGG
TTTCCAGTGGGTACGTGGACGTCGGACGGGTAGGAGGACGGCTTTTCTTC
CATGACAACCCATTCCGCACCATGTCCGTGCAAAACATGGCGGCCTCGTT
GTGGGGTATCGATTTACCCAAGTCGGACGCGATTCGATTGGGGAATTGGG
AGCACCCGGAGCTGTCGACGAAGCAAGTAGAGTACGCGGCCTTGGACGCT
ATGGCGGGACGGGCGATTTACCAAGAGTTTTACCGGAGGGGCCTGCTGGA
CAGGGGCATGCTGAAGGAGATGATGGAAACGTGGTTGATTTCTTCAGAGG
ACGACAATAGAAAGCGTGCGAGGAGTTTGGCGTTGGAATCGGATGTGCTT
CGGAGGTTGTACACGCGCCTCCAGGGCGAGTCGCCTTCCAAGTCCCGGTC
CTCCGCGGCGTCACGCTCTTCGAGTTCTGTGAAGCCTAGGAAGAGGTCAT
CAGGACCCCAGGGAAAGAGCAGAAATGTTGTCAGTAGGAATAGTGGCAGT
AGTAGTATTAGAAGTAGTAGTAATAGTAGTAATAGTAATAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTAATAGTAGTAGCAGCAG
CAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGGAGCAGCAGCAAATGTA
GAGACGCTCCTGTCATTTCTAGCCAGAGTACCCCTGAACTTTTGCCCGAC
ATTGCCGTGGCTTACAAAGCACTGAATGGCACGTGA
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Synonyms
Publications