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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:639703..642280 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02310.1 vs.
Match: EWM21890.1 (werner syndrome exonuclease [Nannochloropsis gaditana]) HSP 1 Score: 360.1 bits (923), Expect = 1.100e-95 Identity = 190/332 (57.23%), Postives = 238/332 (71.69%), Query Frame = 0
Query: 79 LQSADTDVPIAEYLEGGQLSIDSIP---TRMVEIPCPFSHSGPRQYETVKVAVIQDTTCANYWCSRLAHVLRKESGPDGGGGAVGLDLEWKPTFRARQAASRAAVLQLSGPGLCLVIQLQQLRHVPRQLRQILADPTLLKVGVSVDDDLAKLRRDWGMVSSGYVDVGRVGGRLFFHDNPFRTMSVQNMAASLWGIDLPKSDAIRLGNWEHPELSTKQVEYAALDAMAGRAIYQEFYRRGLLDRGMLKEMMETWLISSEDDNRKRARSLALESDVLRRLYTRLQGESPSKSRSSAASRSSSSVKPRKRSSGPQGKSRNVVSRNSGSSSIRSSS 408
L S + P+AEY+EGG LS S TRM+E+ CPFS+ R ETVKVAVIQ TT ANYWC RL H +RKE GP GG GA+GLD+EW+P+F+ Q A R+A+LQLSGPGLCL+IQLQ+L H+PRQL ++L DPTL KVGVSV++DLA+LR DWG+ S +VDVGRVGGR+F PFR +S+Q + +LWGI LPK +IRLGNWE PELS++QVEYAALDAMAGRAIYQ F+RRGLLD+ L+E+M W +SS++ + KRARSLALESD+LR LY R G P++ R+ S ++ + G R SG S R S+
Sbjct: 58 LHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGR--ETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGST 387
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02310.1 ID=NO13G02310.1|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp GGGCAAATATGACGACAATACATGAATGTGCGACAGGAGTCCAGTCTATT TTATAATAGAGGGCGCGTCCGGTGGTTGTCGCGGCATGAAAAGCCGTGCG AATGCGGCAAAGGGAGACAAACAAACGTTTTTGGTAGTTTGAATACCCGT CTCGTGGGGTTAGTGGCCGGGAGCAACCTTGGAGCAGGGACAGACCCGAC GCTGTAGAAGAACCGCTTGACTTGGTGATGGTGGGGATTTAAGGCTGGTT TGTCGTTTTCGTATAAAGAGAAAATACTCAAGCACCGTGACATCCACAAG GGCTCTTTATGTCTCCTTCCGCTCCTTGCGGCTTGATACTTATGCTTTTT GTGATCATTCAACCCTGCACAAATGGTCTGGGTGTGTCATGTGTGATGAG GTGAGCGCAACAGGGTTGCTGGGTTTGCCCCGAAAACTGTATCTTTGCAG ACCATCACCAGACATGACGATCACCACAGCCATTACACAGTTTCTATCAT AAGAAGTGGCTCGGGATGGGGTGTAGTGGTTTGTTAGAGGCCTCCAAGCT ATGTCATAAATGAACGCCAACATGAAGGAGCAAATTTGTTTTCGGTGCAT CAGCAGACGCCGTTCAACACGGAGAGAGATTTTGGGCCCAGCAAGCAGCC TATGTACCACAATATATGCATACATTTCACAGGCTCCCCATGCTACCCTT GGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCCGCATTACAGTCGC TCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTCCTCTATCCTTCCT GACGCAGCAGCCGCAGACGACGCCGATGCCACCATTCCCACGGTCCGCAT GTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCGTCTGTCCACATAC TTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTACTTGGAGGGTGGA CAATTGTCTATAGACAGCATCCCCACGCGCATGGTTGAAATCCCCTGTCC CTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTAAAGGTCGCTGTCA TCCAAGACACGACCTGCGCCAACTACTGGTGCTCCCGCCTCGCTCACGTA CTGCGAAAGGAATCCGGCCCCGACGGTGGCGGCGGTGCTGTGGGGCTCGA TTTGGAATGGAAGCCTACCTTTCGTGCACGGCAAGCTGCCTCCCGCGCCG CCGTATTACAGTTGTCCGGGCCTGGACTCTGCCTGGTCATCCAGCTACAG CAGCTCAGGCACGTTCCGCGGCAGCTTCGTCAGATTTTGGCGGATCCAAC GCTGTTAAAAGTAGGGGTATCAGTCGATGATGATTTGGCCAAACTTCGGC GTGACTGGGGTATGGTTTCCAGTGGGTACGTGGACGTCGGACGGGTAGGA GGACGGCTTTTCTTCCATGACAACCCATTCCGCACCATGTCCGTGCAAAA CATGGCGGCCTCGTTGTGGGGTATCGATTTACCCAAGTCGGACGCGATTC GATTGGGGAATTGGGAGCACCCGGAGCTGTCGACGAAGCAAGTAGAGTAC GCGGCCTTGGACGCTATGGCGGGACGGGCGATTTACCAAGAGTTTTACCG GAGGGGCCTGCTGGACAGGGGCATGCTGAAGGAGATGATGGAAACGTGGT TGATTTCTTCAGAGGACGACAATAGAAAGCGTGCGAGGAGTTTGGCGTTG GAATCGGATGTGCTTCGGAGGTTGTACACGCGCCTCCAGGGCGAGTCGCC TTCCAAGTCCCGGTCCTCCGCGGCGTCACGCTCTTCGAGTTCTGTGAAGC CTAGGAAGAGGTCATCAGGACCCCAGGGAAAGAGCAGAAATGTTGTCAGT AGGAATAGTGGCAGTAGTAGTATTAGAAGTAGTAGTAATAGTAGTAATAG TAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTAA TAGTAGTAGCAGCAGCAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGGA GCAGCAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCCAGAGTACCCCT GAACTTTTGCCCGACATTGCCGTGGCTTACAAAGCACTGAATGGCACGTG ACGTTGACGGATAGTGTGAATAGAAGTGAGAAGTGCGACAAGGCATGCAA GTATGATGACGACATAATGTAAGTAAAGAAACGAACTCTGGCTGGCGAGC GTGA back to topprotein sequence of NO13G02310.1 >NO13G02310.1-protein ID=NO13G02310.1-protein|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp MHTFHRLPMLPLALRRGSAAVRLPALQSLYPPLHLLRRSTSSILPDAAAA DDADATIPTVRMYKSNELDAVATPSVHILQSADTDVPIAEYLEGGQLSID SIPTRMVEIPCPFSHSGPRQYETVKVAVIQDTTCANYWCSRLAHVLRKES GPDGGGGAVGLDLEWKPTFRARQAASRAAVLQLSGPGLCLVIQLQQLRHV PRQLRQILADPTLLKVGVSVDDDLAKLRRDWGMVSSGYVDVGRVGGRLFF HDNPFRTMSVQNMAASLWGIDLPKSDAIRLGNWEHPELSTKQVEYAALDA MAGRAIYQEFYRRGLLDRGMLKEMMETWLISSEDDNRKRARSLALESDVL RRLYTRLQGESPSKSRSSAASRSSSSVKPRKRSSGPQGKSRNVVSRNSGS SSIRSSSNSSNSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSRSSSNSSSSSSSRSSKSSSNRSSSKCRDAPVISSQSTPELLPD IAVAYKALNGT* back to topmRNA from alignment at chr13:639703..642280- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02310.1 ID=NO13G02310.1|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp|location=Sequence derived from alignment at chr13:639703..642280- (Nannochloropsis oceanica) GGGCAAATATGACGACAATACATGAATGTGCGACAGGAGTCCAGTCTATT
TTATAATAGAGGGCGCGTCCGGTGGTTGTCGCGGCATGAAAAGCCGTGCG
AATGCGGCAAAGGGAGACAAACAAACGTTTTTGGTAGTTTGAATACCCGT
CTCGTGGGGTTAGTGGCCGGGAGCAACCTTGGAGCAGGGACAGACCCGAC
GCTGTAGAAGAACCGCTTGACTTGGTGATGGTGGGGATTTAAGGCTGGTT
TGTCGTTTTCGTATAAAGAGAAAATACTCAAGCACCGTGACATCCACAAG
GGCTCTTTATGTCTCCTTCCGCTCCTTGCGGCTTGATACTTATGCTTTTT
GTGATCATTCAACCCTGCACAAATGGTCTGGGTGTGTCATGTGTGATGAG
GTGAGCGCAACAGGGTTGCTGGGTTTGCCCCGAAAACTGTATCTTTGCAG
ACCATCACCAGACATGACGATCACCACAGCCATTACACAGTTTCTATCAT
AAGAAGTGGCTCGGGATGGGGTGTAGTGGTTTGTTAGAGGCCTCCAAGCT
ATGTCATAAATGAACGCCAACATGAAGGAGCAAATTTGTTTTCGGTGCAT
CAGCAGACGCCGTTCAACACGGAGAGAGATTTTGGGCCCAGCAAGCAGCC
TATGTACCACAATATATGCATACATTTCACAGGCTCCCCATGCTACCCTT
GGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCCGCATTACAGTCGC
TCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTCCTCTATCCTTCCT
GACGCAGCAGCCGCAGACGACGCCGATGCCACCATTCCCACGGTCCGCAT
GTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCGTCTGTCCACATAC
TTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTACTTGGAGGGTGGA
CAATTGTCTATAGACAGCATCCCCACGCGCATGGTTGAAATCCCCTGTCC
CTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTAAAGGTAGGTGTAG
ATAAATCATTCGTGTTTGGCATAGAGGGATTTGGTGGTACGGCCGCGATA
CTTTACCACAACAATCAAGCAATACATTTGATCTCGGTTATCTTCTGTTC
TTGATTTTAACCTGTCCAGCATCCTCACCACAAAAGATTTGAAAGGCCCG
TGGAGCAGCTTGAAGATCCGGCATGTTTGATATTTTAGGATTTTTCCCAC
CTGCGTCATGTCGACGTCCTCACCTACTTCCTTCCTTCTTCTCTTCCTCT
GCCTCTTTCACTAGGTCGCTGTCATCCAAGACACGACCTGCGCCAACTAC
TGGTGCTCCCGCCTCGCTCACGTACTGCGAAAGGAATCCGGCCCCGACGG
TGGCGGCGGTGCTGTGGGGCTCGATTTGGAATGGAAGCCTACCTTTCGTG
CACGGCAAGCTGCCTCCCGCGCCGCCGTATTACAGTTGTCCGGGCCTGGA
CTCTGCCTGGTCATCCAGCTACAGCAGCTCAGGCACGTTCCGCGGCAGCT
TCGTCAGATTTTGGCGGATCCAACGCTGTTAAAAGTAGGGGTATCAGTCG
ATGATGATTTGGCCAAACTTCGGCGTGACTGGGGTATGGTTTCCAGTGGG
TACGTGGACGTCGGACGGGTAGGAGGACGGCTTTTCTTCCATGACAACCC
ATTCCGCACCATGTCCGTGCAAAACATGGCGGCCTCGTTGTGGGGTATCG
ATTTACCCAAGTCGGACGCGATTCGATTGGGGAATTGGGAGCACCCGGAG
CTGTCGACGAAGCAAGTAGAGTACGCGGCCTTGGACGCTATGGCGGGACG
GGCGATTTACCAAGAGTTTTACCGGAGGGGCCTGCTGGACAGGGGCATGC
TGAAGGAGATGATGGAAACGTGGTTGATTTCTTCAGAGGACGACAATAGA
AAGCGTGCGAGGAGTTTGGCGTTGGAATCGGATGTGCTTCGGAGGTTGTA
CACGCGCCTCCAGGGCGAGTCGCCTTCCAAGTCCCGGTCCTCCGCGGCGT
CACGCTCTTCGAGTTCTGTGAAGCCTAGGAAGAGGTCATCAGGACCCCAG
GGAAAGAGCAGAAATGTTGTCAGTAGGAATAGTGGCAGTAGTAGTATTAG
AAGTAGTAGTAATAGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGAAGTAGTAGTAATAGTAGTAGCAGCAGCAGCAGCAGAA
GCAGCAAGAGCAGCAGCAACAGGAGCAGCAGCAAATGTAGAGACGCTCCT
GTCATTTCTAGCCAGAGTACCCCTGAACTTTTGCCCGACATTGCCGTGGC
TTACAAAGCACTGAATGGCACGTGACGTTGACGGATAGTGTGAATAGAAG
TGAGAAGTGCGACAAGGCATGCAAGTATGATGACGACATAATGTAAGTAA
AGAAACGAACTCTGGCTGGCGAGCGTGA back to topCoding sequence (CDS) from alignment at chr13:639703..642280- >NO13G02310.1 ID=NO13G02310.1|Name=NO13G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr13:639703..642280- (Nannochloropsis oceanica) ATGCATACATTTCACAGGCTCCCCATGCTACCCTTGGCACTACGACGGGG CTCTGCTGCAGTGCGTCTGCCCGCATTACAGTCGCTCTATCCACCGCTCC ACTTGCTTCGACGGTCGACCTCCTCTATCCTTCCTGACGCAGCAGCCGCA GACGACGCCGATGCCACCATTCCCACGGTCCGCATGTACAAGTCTAATGA ACTAGATGCTGTAGCCACTCCGTCTGTCCACATACTTCAAAGTGCCGACA CCGATGTGCCCATTGCCGAGTACTTGGAGGGTGGACAATTGTCTATAGAC AGCATCCCCACGCGCATGGTTGAAATCCCCTGTCCCTTTTCCCACAGTGG CCCACGTCAATACGAGACGGTAAAGGTCGCTGTCATCCAAGACACGACCT GCGCCAACTACTGGTGCTCCCGCCTCGCTCACGTACTGCGAAAGGAATCC GGCCCCGACGGTGGCGGCGGTGCTGTGGGGCTCGATTTGGAATGGAAGCC TACCTTTCGTGCACGGCAAGCTGCCTCCCGCGCCGCCGTATTACAGTTGT CCGGGCCTGGACTCTGCCTGGTCATCCAGCTACAGCAGCTCAGGCACGTT CCGCGGCAGCTTCGTCAGATTTTGGCGGATCCAACGCTGTTAAAAGTAGG GGTATCAGTCGATGATGATTTGGCCAAACTTCGGCGTGACTGGGGTATGG TTTCCAGTGGGTACGTGGACGTCGGACGGGTAGGAGGACGGCTTTTCTTC CATGACAACCCATTCCGCACCATGTCCGTGCAAAACATGGCGGCCTCGTT GTGGGGTATCGATTTACCCAAGTCGGACGCGATTCGATTGGGGAATTGGG AGCACCCGGAGCTGTCGACGAAGCAAGTAGAGTACGCGGCCTTGGACGCT ATGGCGGGACGGGCGATTTACCAAGAGTTTTACCGGAGGGGCCTGCTGGA CAGGGGCATGCTGAAGGAGATGATGGAAACGTGGTTGATTTCTTCAGAGG ACGACAATAGAAAGCGTGCGAGGAGTTTGGCGTTGGAATCGGATGTGCTT CGGAGGTTGTACACGCGCCTCCAGGGCGAGTCGCCTTCCAAGTCCCGGTC CTCCGCGGCGTCACGCTCTTCGAGTTCTGTGAAGCCTAGGAAGAGGTCAT CAGGACCCCAGGGAAAGAGCAGAAATGTTGTCAGTAGGAATAGTGGCAGT AGTAGTATTAGAAGTAGTAGTAATAGTAGTAATAGTAATAGTAGTAGTAG TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTAATAGTAGTAGCAGCAG CAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGGAGCAGCAGCAAATGTA GAGACGCTCCTGTCATTTCTAGCCAGAGTACCCCTGAACTTTTGCCCGAC ATTGCCGTGGCTTACAAAGCACTGAATGGCACGTGA back to top
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