NO13G02290.1, NO13G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02290.1
Unique NameNO13G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr13:637602..638619 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:637602..638619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02290.1 vs.
Match: EWM21891.1 (hcp beta-lactamase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 453.8 bits (1166), Expect = 3.300e-124
Identity = 206/227 (90.75%), Postives = 219/227 (96.48%), Query Frame = 0
Query:    1 MIEGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHGMACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHLLRTLPEDKMHKRDPLRAKGLLEKGCARGHGPSCFNLAVMHKKGDEGIPKNEQEFEKFKRVTEELVEQTGSLTWKKGH 228
            MIEGLQAIDPEYEERMLAFE+DCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNC KYSHPPSCFNLGRL+LGGRGVPQSD RSLKCF+TSCKAGHGMACHHMGLLLLYGKDGGYDV KD+KKAT IL+KACGEGIPDSCYALASHLLR LPEDK H+RD L+AKGLLE+GCARGHGPSCFNLAVMHKKGD GIP+NEQEFEK+K+VTE+LVEQTG+LTWKKGH
Sbjct:    1 MIEGLQAIDPEYEERMLAFEMDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCAKYSHPPSCFNLGRLYLGGRGVPQSDTRSLKCFDTSCKAGHGMACHHMGLLLLYGKDGGYDVSKDVKKATGILNKACGEGIPDSCYALASHLLRHLPEDKSHERDALKAKGLLEQGCARGHGPSCFNLAVMHKKGDTGIPRNEQEFEKYKKVTEDLVEQTGALTWKKGH 227          
The following BLAST results are available for this feature:
BLAST of NO13G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21891.13.300e-12490.75hcp beta-lactamase-like protein [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02290NO13G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02290.1NO13G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02290.1.cds1NO13G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02290.1.cds2NO13G02290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02290.1.cds3NO13G02290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02290.1 ID=NO13G02290.1|Name=NO13G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGATTGAGGGTCTCCAGGCGATCGACCCGGAGTATGAGGAGCGGATGCT
TGCCTTTGAGATAGATTGTGACAAAGGCAAAGGGGATGCCTGGGCCTGCC
ACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGGGCGACTACAATAAAGCT
GCAAAGGTATACACGGATAATTGCACTAAGTATAGCCATCCTCCCTCATG
TTTCAACCTTGGTCGTCTCTTTTTGGGTGGGCGAGGCGTCCCGCAGAGCG
ACGCCCGGTCCCTGAAGTGCTTCGAGACCTCCTGCAAAGCTGGGCATGGT
ATGGCCTGCCATCACATGGGGCTGCTCCTTTTGTACGGGAAAGATGGGGG
CTACGACGTTGGTAAGGACCTCAAGAAAGCGACGTCCATCTTGGATAAGG
CCTGTGGGGAGGGCATCCCGGATAGTTGTTATGCGTTGGCTAGCCACTTG
CTGCGCACCCTGCCTGAGGACAAGATGCACAAGCGGGACCCTTTGCGGGC
GAAGGGTTTATTGGAAAAGGGTTGTGCGCGGGGCCATGGACCCTCATGCT
TCAATTTGGCGGTGATGCACAAGAAGGGCGATGAGGGGATTCCCAAGAAC
GAGCAGGAGTTCGAAAAGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCA
AACAGGCTCGCTCACATGGAAGAAGGGGCATTAG
back to top

protein sequence of NO13G02290.1

>NO13G02290.1-protein ID=NO13G02290.1-protein|Name=NO13G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MIEGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKA
AKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHG
MACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHL
LRTLPEDKMHKRDPLRAKGLLEKGCARGHGPSCFNLAVMHKKGDEGIPKN
EQEFEKFKRVTEELVEQTGSLTWKKGH*
back to top

mRNA from alignment at chr13:637602..638619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02290.1 ID=NO13G02290.1|Name=NO13G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp|location=Sequence derived from alignment at chr13:637602..638619- (Nannochloropsis oceanica)
ATGATTGAGGGTCTCCAGGCGATCGACCCGGAGTATGAGGAGCGGATGCT TGCCTTTGAGATAGATTGTGACAAAGGCAAAGGGGATGCCTGGGCCTGCC ACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGGTATGTTTTGAGGCTATG GGAATAATATGCTAATCAAAGAAACAGTGCAGGCGTGTTAGGATGGGGTT GCTTTGTGTCTGCCGAACAGAAATCGGGCAGTTAGGGTCAGAAAGAGGCT GACTCCCTCATCCCGTCCTACCCTACCCCCACCTTGCGGAAATTATCGTA GGGCGACTACAATAAAGCTGCAAAGGTATACACGGATAATTGCACTAAGT ATAGCCATCCTCCCTCATGTTTCAACCTTGGTCGTCTCTTTTTGGGTGGG CGAGGCGTCCCGCAGAGCGACGCCCGGTCCCTGAAGTGCTTCGAGACCTC CTGCAAAGCTGGGCATGGTATGGCCTGCCATCACATGGGGCTGCTCCTTT TGTACGGGAAAGATGGGGGCTACGACGTTGGTAAGGACCTCAAGAAAGCG ACGTCCATCTTGGATAAGGCCTGTGGGGAGGGCATCCCGGATAGTTGTTA TGCGTTGGCTAGCCACTTGCTGCGCACCCTGCCTGAGGACAAGATGCACA AGCGGGACCCTTTGCGGGCGAAGGGTTTATTGGAAAAGGGTTGTGCGCGG GGCCATGGACCCTCATGCTTCAATTTGGCGGTGATGCACAAGAAGGGCGA TGAGGGGATTCCCAAGTACGTGATGTCAGTGGAGTTGGAGTAGGGTGCAG GTTGGGTCTCCGTTACAAACCAACAACCGGGCTTTCTTGCATTTCACCCA CGTCCTAACGAGGACCAGATCATCCACCCACCTCTTCTCTTTCATTTTCA CTGACATACTTCTCTACCGCAACAATACAGGAACGAGCAGGAGTTCGAAA AGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCAAACAGGCTCGCTCACA TGGAAGAAGGGGCATTAG
back to top

Coding sequence (CDS) from alignment at chr13:637602..638619-

>NO13G02290.1 ID=NO13G02290.1|Name=NO13G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr13:637602..638619- (Nannochloropsis oceanica)
ATGATTGAGGGTCTCCAGGCGATCGACCCGGAGTATGAGGAGCGGATGCT
TGCCTTTGAGATAGATTGTGACAAAGGCAAAGGGGATGCCTGGGCCTGCC
ACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGGGCGACTACAATAAAGCT
GCAAAGGTATACACGGATAATTGCACTAAGTATAGCCATCCTCCCTCATG
TTTCAACCTTGGTCGTCTCTTTTTGGGTGGGCGAGGCGTCCCGCAGAGCG
ACGCCCGGTCCCTGAAGTGCTTCGAGACCTCCTGCAAAGCTGGGCATGGT
ATGGCCTGCCATCACATGGGGCTGCTCCTTTTGTACGGGAAAGATGGGGG
CTACGACGTTGGTAAGGACCTCAAGAAAGCGACGTCCATCTTGGATAAGG
CCTGTGGGGAGGGCATCCCGGATAGTTGTTATGCGTTGGCTAGCCACTTG
CTGCGCACCCTGCCTGAGGACAAGATGCACAAGCGGGACCCTTTGCGGGC
GAAGGGTTTATTGGAAAAGGGTTGTGCGCGGGGCCATGGACCCTCATGCT
TCAATTTGGCGGTGATGCACAAGAAGGGCGATGAGGGGATTCCCAAGAAC
GAGCAGGAGTTCGAAAAGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCA
AACAGGCTCGCTCACATGGAAGAAGGGGCATTAG
back to top
Synonyms
Publications