NO13G02220.1, NO13G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02220.1
Unique NameNO13G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr13:620317..621773 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:620317..621773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02220NO13G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02220.1NO13G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02220.1.cds1NO13G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02220.1.cds2NO13G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02220.1 ID=NO13G02220.1|Name=NO13G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
CCCCAAGAAATTTTCGCGGACTCAAATGTTTTTGGACCCAAATCAGCGCA
CACATTCCCTATTGTCGTGTGGATTGAATGATCATCACTTAGCCTGTACT
GGGAGCAGAATGCTGCATGCTTAAAGGTCCACTCCTCTTACATGCACGGT
TGCCGCGGCGGTATGCCAGAACAGTAGACTAAGTAAGAATCTCAAAACCT
CCGCACCCTATATCCCACAGGAACAACAAGGACAGATGGATCACAGTGCT
GGCGGCGGTGGCATGGCAGGCATGGACGACAGCATGCCCCTGGCGATGCC
CATGGCTATGGACCTGACTCTCAAGTGCACCTGCCGCGTTGGCAAGATCT
TCGTATCGGCGTGGGACATTCAGACTTGCGGGACGTACTCTGCGAGTTTG
GCCGTCATCGCCTTGTTCTGCTTCCTGCGGCACCTGCTCATGATGCACAA
GACCAAGCTGATTTTGCGGCTGGCAGAGCAAGATGCAGACGCAGGCATGA
AGCGGACATCCTCGATGGTGGGCGGCGTGTGCTGCAACGTCAAGCCCGGG
TCGCTGTCATCTTCATACGGGTCCACCACTTTCGCAGAGAGCTCAAACGA
CGAGGAAAGCCAACAGCTCACGAGAATAAAAAGAGGGACCTCCGCCACAA
ACACGAACGCTAAGGGAGAGACTGAATACAGGCCCGCCCAATTGCGACAC
CAACTTTCCGAAGAAGCCTTCGGCAGGCTAGGGAACTCGATCAGCCTCCA
CGCCCGCTTAGTTTTGACGGCGTATTTTGCCTTGCTGAGTGGCTCGTCTC
TCTTGGTGATGCTGCTGGCGATGAGCTTCAATGTCGGCATTATTCTGGCA
ATCTTGGTGGGGGAGGGAGTGGGGCATTTAGTTTTCGCCTCCGATTTCTT
GCACAATCTGGTGGACATTGGGAGTTTCCACTAGATAGATGAGGAGAGAG
AGGAGAGGAAGGTGGGGAAGGAGCCGGGGATGAGACGCCCAACGAAGGGA
AATACTTGAAGCATACCCCAAAAGCAGAGATTTTGAAATATTAGACATGT
ACAAAAGAGAAGTCAGCACAAATAATGGCGCTGAAAATATATGAATATAG
CTATTTAGATTGTGAGGGGTGCTTGAGAGTGTCATTTGAAGCTGTGTGTG
GCATGAAGAGCGAGGCTGGGGGCGTGCCGAGGCAAAAGACTGTAGGTGGT
GGAACCATCAGGAAATATCAGCATCTCTCACGGGTCAAGCAGCAGCATAT
TTCACCCGCTGAGCAGTTGCGGATTGACTCAGTCAAGTAGATAAAGCGGA
TGAGTGGTCAAAATCAAAGTAAAAAGCAACCAGAGTTGGAAAAAGTA
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protein sequence of NO13G02220.1

>NO13G02220.1-protein ID=NO13G02220.1-protein|Name=NO13G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MDHSAGGGGMAGMDDSMPLAMPMAMDLTLKCTCRVGKIFVSAWDIQTCGT
YSASLAVIALFCFLRHLLMMHKTKLILRLAEQDADAGMKRTSSMVGGVCC
NVKPGSLSSSYGSTTFAESSNDEESQQLTRIKRGTSATNTNAKGETEYRP
AQLRHQLSEEAFGRLGNSISLHARLVLTAYFALLSGSSLLVMLLAMSFNV
GIILAILVGEGVGHLVFASDFLHNLVDIGSFH*
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mRNA from alignment at chr13:620317..621773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02220.1 ID=NO13G02220.1|Name=NO13G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr13:620317..621773+ (Nannochloropsis oceanica)
CCCCAAGAAATTTTCGCGGACTCAAATGTTTTTGGACCCAAATCAGCGCA CACATTCCCTATTGTCGTGTGGATTGAATGATCATCACTTAGCCTGTACT GGGAGCAGAATGCTGCATGCTTAAAGGTCCACTCCTCTTACATGCACGGT TGCCGCGGCGGTATGCCAGAACAGTAGACTAAGTAAGAATCTCAAAACCT CCGCACCCTATATCCCACAGGAACAACAAGGACAGATGGATCACAGTGCT GGCGGCGGTGGCATGGCAGGCATGGACGACAGCATGCCCCTGGCGATGCC CATGGCTATGGACCTGACTCTCAAGTGCACCTGCCGCGTTGGCAAGATCT TCGTATCGGCGTGGGACATTCAGACTTGCGGGACGTACTCTGCGAGTTTG GCCGTCATCGCCTTGTTCTGCTTCCTGCGGCACCTGCTCATGATGCACAA GACCAAGCTGATTTTGCGGCTGGCAGAGCAAGATGCAGGTACACATCTTT GAATTATTGCGCGATCCTCATATTGAGTCACATCCAGTCACCCTTCCCTG TCCTCTTCTCAAATCCTCTTCTCAAATGTCTCCTCACCCTGTCCACAGAC GCAGGCATGAAGCGGACATCCTCGATGGTGGGCGGCGTGTGCTGCAACGT CAAGCCCGGGTCGCTGTCATCTTCATACGGGTCCACCACTTTCGCAGAGA GCTCAAACGACGAGGAAAGCCAACAGCTCACGAGAATAAAAAGAGGGACC TCCGCCACAAACACGAACGCTAAGGGAGAGACTGAATACAGGCCCGCCCA ATTGCGACACCAACTTTCCGAAGAAGCCTTCGGCAGGCTAGGGAACTCGA TCAGCCTCCACGCCCGCTTAGTTTTGACGGCGTATTTTGCCTTGCTGAGT GGCTCGTCTCTCTTGGTGATGCTGCTGGCGATGAGCTTCAATGTCGGCAT TATTCTGGCAATCTTGGTGGGGGAGGGAGTGGGGCATTTAGTTTTCGCCT CCGATTTCTTGCACAATCTGGTGGACATTGGGAGTTTCCACTAGATAGAT GAGGAGAGAGAGGAGAGGAAGGTGGGGAAGGAGCCGGGGATGAGACGCCC AACGAAGGGAAATACTTGAAGCATACCCCAAAAGCAGAGATTTTGAAATA TTAGACATGTACAAAAGAGAAGTCAGCACAAATAATGGCGCTGAAAATAT ATGAATATAGCTATTTAGATTGTGAGGGGTGCTTGAGAGTGTCATTTGAA GCTGTGTGTGGCATGAAGAGCGAGGCTGGGGGCGTGCCGAGGCAAAAGAC TGTAGGTGGTGGAACCATCAGGAAATATCAGCATCTCTCACGGGTCAAGC AGCAGCATATTTCACCCGCTGAGCAGTTGCGGATTGACTCAGTCAAGTAG ATAAAGCGGATGAGTGGTCAAAATCAAAGTAAAAAGCAACCAGAGTTGGA AAAAGTA
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Coding sequence (CDS) from alignment at chr13:620317..621773+

>NO13G02220.1 ID=NO13G02220.1|Name=NO13G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr13:620317..621773+ (Nannochloropsis oceanica)
ATGGATCACAGTGCTGGCGGCGGTGGCATGGCAGGCATGGACGACAGCAT
GCCCCTGGCGATGCCCATGGCTATGGACCTGACTCTCAAGTGCACCTGCC
GCGTTGGCAAGATCTTCGTATCGGCGTGGGACATTCAGACTTGCGGGACG
TACTCTGCGAGTTTGGCCGTCATCGCCTTGTTCTGCTTCCTGCGGCACCT
GCTCATGATGCACAAGACCAAGCTGATTTTGCGGCTGGCAGAGCAAGATG
CAGACGCAGGCATGAAGCGGACATCCTCGATGGTGGGCGGCGTGTGCTGC
AACGTCAAGCCCGGGTCGCTGTCATCTTCATACGGGTCCACCACTTTCGC
AGAGAGCTCAAACGACGAGGAAAGCCAACAGCTCACGAGAATAAAAAGAG
GGACCTCCGCCACAAACACGAACGCTAAGGGAGAGACTGAATACAGGCCC
GCCCAATTGCGACACCAACTTTCCGAAGAAGCCTTCGGCAGGCTAGGGAA
CTCGATCAGCCTCCACGCCCGCTTAGTTTTGACGGCGTATTTTGCCTTGC
TGAGTGGCTCGTCTCTCTTGGTGATGCTGCTGGCGATGAGCTTCAATGTC
GGCATTATTCTGGCAATCTTGGTGGGGGAGGGAGTGGGGCATTTAGTTTT
CGCCTCCGATTTCTTGCACAATCTGGTGGACATTGGGAGTTTCCACTAG
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Synonyms
Publications