NO13G02200.1, NO13G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02200.1
Unique NameNO13G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1719
Alignment locationchr13:617154..618872 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:617154..618872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02200.1 vs.
Match: EWM21877.1 (hypothetical protein Naga_100159g13 [Nannochloropsis gaditana])

HSP 1 Score: 786.2 bits (2029), Expect = 7.000e-224
Identity = 399/539 (74.03%), Postives = 470/539 (87.20%), Query Frame = 0 
Query:   38 PRQRTRPLHARDGAGDKERIAKFLRLKKIKEGGGDYNRLVEEGAGSSNALDEDF-YYDDDKNGDAAVGNLGDYSAEDKEMYDNLKRQEKQALVDKILKAKEAGLIKPSS---SSSSSVPNKGQPSPYLSRKMKQEQEVEERFQGVETYKPQSSSWGEFARPKNIPEAFGGGVHIPEGGVSLKGDKEWLAKYDNLMAQVREYKKEVQGTVLTPLEREDEERINVARGQARKYMLRGEYEAAKDVLLPFRTICSVRSALGASTLMDLAMAYEALYEFKEAQEIYTQVRSSPVKDLRVKAKALNLGAEAMKKLGLGSKSNVNPRNMINFAYIPGQIDGSYGLYMKGSSNSNYDDAPTKPRIESVAQALELLEDAVIAQGVGISFDTINAALRAIHQEILRSDDSAGGPKRRLAPLPEEELDGRWRCRVTSYQENVQFLTKLNVWQRVETVAGTITGQLVVAPFEVIRDVNLKYTFDPLARVLNYGEQDKMASTFGLPTGLPHTLRVLAISDTLMVTARSSDKKGSTPRASYDARFAIWTRAG 573
            P++   PL+A  G GDKER+AK LRLKKIKEGGGDYNRL++ G   S    ED+ Y+D+D N DAA+ +  +Y+AED+EMY+ LKRQEKQAL+DKILK+K     + SS   S+SS+ PNKGQPSPYL+RK++Q Q+VE+RFQ VETYKPQS+SWGEFARPKNIP+AFGGGVHIPEGGV+L+GDKEWLAKYD LMAQVREYKK VQGTVLTPLE+ DEERI VAR QARKYMLRGEYEAAK VLLPFR+ICSVRS+LGASTLMDLAMA+EA+YEFKEAQ+IYTQVRSSPVKDLR KAKALNLGAEAMKKLGLGSKSNVNPRNMINFAYIPGQI+GSYGLYMKG S+ + DD+ +  RIESVAQALE+LEDAVIAQGVG+ FD INAALR +HQ++LRSD ++ GP RRLAP+P ++LDGRWRCR+T++QE+V FLTK++VWQRVE+   TITG+LVV+PFEV+RDV + +TFD   RVLNYG +  MAST G+PTGLPHTLRVLAI+DT++VTARSSD KG+TP+ SY+ARFA+WTRAG
Sbjct:   34 PKRHLHPLYA-GGGGDKERVAKLLRLKKIKEGGGDYNRLLDGGVSGSEGGQEDYRYWDNDANDDAALPDSSEYTAEDQEMYNELKRQEKQALLDKILKSKAQSQTQSSSTTLSTSSASPNKGQPSPYLARKLQQLQDVEKRFQNVETYKPQSTSWGEFARPKNIPDAFGGGVHIPEGGVTLEGDKEWLAKYDTLMAQVREYKKGVQGTVLTPLEKADEERIKVARTQARKYMLRGEYEAAKAVLLPFRSICSVRSSLGASTLMDLAMAHEAVYEFKEAQDIYTQVRSSPVKDLRAKAKALNLGAEAMKKLGLGSKSNVNPRNMINFAYIPGQIEGSYGLYMKGKSSPSPDDSMSGLRIESVAQALEVLEDAVIAQGVGVRFDAINAALRVVHQDVLRSDFASEGPSRRLAPVPVQDLDGRWRCRLTAHQESVDFLTKVDVWQRVESETRTITGKLVVSPFEVVRDVKVAFTFDGTGRVLNYGVEGSMASTLGIPTGLPHTLRVLAITDTMLVTARSSDAKGTTPKESYEARFAVWTRAG 571
The following BLAST results are available for this feature:
BLAST of NO13G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21877.17.000e-22474.03hypothetical protein Naga_100159g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02200NO13G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02200.1NO13G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02200.1.cds1NO13G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02200.1 ID=NO13G02200.1|Name=NO13G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
ATGGTGGGGCTGCTTCGACCTCGTCGATCCTGCGCAGGACTTGTCATCTT
CACACCACTACTCCTCCTGCTCATCGACATTGCCCTGGCCTTCATTTTCC
CCTACGCGGCACCACGACAGCGTACCCGCCCTCTACACGCTCGAGATGGT
GCCGGGGATAAGGAGCGCATTGCCAAGTTTCTGAGGCTGAAAAAGATCAA
GGAAGGAGGAGGAGATTACAATCGGTTGGTCGAAGAGGGAGCCGGCAGCA
GCAATGCGCTTGACGAGGACTTTTACTACGATGACGATAAGAATGGCGAT
GCTGCCGTGGGGAATTTAGGAGACTACTCGGCTGAGGACAAGGAAATGTA
CGACAATTTAAAGCGGCAAGAAAAGCAGGCATTGGTAGATAAGATCCTCA
AGGCCAAAGAAGCGGGGCTAATCAAGCCGTCATCCTCGTCTTCTTCAAGC
GTGCCTAACAAGGGGCAGCCGTCCCCATATCTCTCGCGCAAAATGAAGCA
GGAACAGGAAGTGGAAGAGCGATTCCAGGGCGTTGAGACGTACAAGCCAC
AAAGCTCGTCGTGGGGGGAGTTCGCGCGCCCCAAAAATATTCCTGAGGCT
TTTGGTGGTGGCGTCCATATTCCGGAAGGCGGCGTGAGCCTTAAAGGCGA
CAAGGAATGGCTAGCAAAGTACGACAACCTCATGGCCCAAGTCCGCGAGT
ACAAGAAGGAAGTGCAAGGAACGGTGTTGACCCCCTTGGAAAGGGAGGAC
GAGGAGAGAATCAATGTCGCAAGAGGACAAGCACGGAAATACATGCTGCG
CGGGGAGTACGAGGCCGCCAAAGACGTACTCTTGCCCTTTCGTACAATTT
GCTCGGTGCGCAGTGCCTTAGGGGCTTCGACGCTTATGGATTTGGCAATG
GCTTACGAGGCGCTGTACGAATTCAAGGAAGCCCAGGAGATTTACACGCA
AGTGCGGAGTTCGCCTGTGAAAGACTTGCGGGTCAAGGCCAAGGCTCTCA
ACCTAGGGGCGGAGGCGATGAAAAAGCTAGGACTTGGTTCTAAGAGTAAT
GTCAACCCCCGCAACATGATCAACTTTGCCTATATTCCCGGACAGATAGA
CGGGAGCTATGGTTTGTATATGAAGGGGAGTAGCAATTCCAACTACGACG
ATGCGCCCACCAAGCCACGGATCGAGTCAGTGGCTCAAGCCTTGGAGCTT
TTGGAAGATGCTGTCATCGCGCAAGGGGTGGGGATAAGCTTTGACACCAT
AAATGCGGCTTTGCGTGCTATCCATCAAGAGATTTTGCGGAGCGACGACT
CGGCCGGCGGACCCAAGCGGAGATTGGCGCCATTGCCTGAAGAAGAACTC
GATGGCCGATGGCGTTGTCGCGTGACATCGTATCAAGAGAACGTGCAATT
TCTGACTAAATTGAATGTGTGGCAGCGAGTGGAAACGGTGGCCGGGACTA
TCACGGGCCAGCTGGTCGTAGCACCATTCGAGGTCATAAGGGACGTAAAC
CTGAAGTACACTTTTGACCCGCTTGCGCGTGTTCTCAATTATGGCGAGCA
GGATAAGATGGCCAGTACGTTTGGTTTGCCTACGGGACTTCCGCATACTT
TGCGTGTCCTGGCGATAAGTGACACTTTGATGGTGACTGCGCGGTCCTCT
GACAAAAAGGGCTCGACGCCGCGGGCTTCCTACGACGCGCGGTTTGCCAT
ATGGACGCGAGCAGGTTGA
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protein sequence of NO13G02200.1

>NO13G02200.1-protein ID=NO13G02200.1-protein|Name=NO13G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MVGLLRPRRSCAGLVIFTPLLLLLIDIALAFIFPYAAPRQRTRPLHARDG
AGDKERIAKFLRLKKIKEGGGDYNRLVEEGAGSSNALDEDFYYDDDKNGD
AAVGNLGDYSAEDKEMYDNLKRQEKQALVDKILKAKEAGLIKPSSSSSSS
VPNKGQPSPYLSRKMKQEQEVEERFQGVETYKPQSSSWGEFARPKNIPEA
FGGGVHIPEGGVSLKGDKEWLAKYDNLMAQVREYKKEVQGTVLTPLERED
EERINVARGQARKYMLRGEYEAAKDVLLPFRTICSVRSALGASTLMDLAM
AYEALYEFKEAQEIYTQVRSSPVKDLRVKAKALNLGAEAMKKLGLGSKSN
VNPRNMINFAYIPGQIDGSYGLYMKGSSNSNYDDAPTKPRIESVAQALEL
LEDAVIAQGVGISFDTINAALRAIHQEILRSDDSAGGPKRRLAPLPEEEL
DGRWRCRVTSYQENVQFLTKLNVWQRVETVAGTITGQLVVAPFEVIRDVN
LKYTFDPLARVLNYGEQDKMASTFGLPTGLPHTLRVLAISDTLMVTARSS
DKKGSTPRASYDARFAIWTRAG*
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mRNA from alignment at chr13:617154..618872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02200.1 ID=NO13G02200.1|Name=NO13G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at chr13:617154..618872+ (Nannochloropsis oceanica)
ATGGTGGGGCTGCTTCGACCTCGTCGATCCTGCGCAGGACTTGTCATCTT
CACACCACTACTCCTCCTGCTCATCGACATTGCCCTGGCCTTCATTTTCC
CCTACGCGGCACCACGACAGCGTACCCGCCCTCTACACGCTCGAGATGGT
GCCGGGGATAAGGAGCGCATTGCCAAGTTTCTGAGGCTGAAAAAGATCAA
GGAAGGAGGAGGAGATTACAATCGGTTGGTCGAAGAGGGAGCCGGCAGCA
GCAATGCGCTTGACGAGGACTTTTACTACGATGACGATAAGAATGGCGAT
GCTGCCGTGGGGAATTTAGGAGACTACTCGGCTGAGGACAAGGAAATGTA
CGACAATTTAAAGCGGCAAGAAAAGCAGGCATTGGTAGATAAGATCCTCA
AGGCCAAAGAAGCGGGGCTAATCAAGCCGTCATCCTCGTCTTCTTCAAGC
GTGCCTAACAAGGGGCAGCCGTCCCCATATCTCTCGCGCAAAATGAAGCA
GGAACAGGAAGTGGAAGAGCGATTCCAGGGCGTTGAGACGTACAAGCCAC
AAAGCTCGTCGTGGGGGGAGTTCGCGCGCCCCAAAAATATTCCTGAGGCT
TTTGGTGGTGGCGTCCATATTCCGGAAGGCGGCGTGAGCCTTAAAGGCGA
CAAGGAATGGCTAGCAAAGTACGACAACCTCATGGCCCAAGTCCGCGAGT
ACAAGAAGGAAGTGCAAGGAACGGTGTTGACCCCCTTGGAAAGGGAGGAC
GAGGAGAGAATCAATGTCGCAAGAGGACAAGCACGGAAATACATGCTGCG
CGGGGAGTACGAGGCCGCCAAAGACGTACTCTTGCCCTTTCGTACAATTT
GCTCGGTGCGCAGTGCCTTAGGGGCTTCGACGCTTATGGATTTGGCAATG
GCTTACGAGGCGCTGTACGAATTCAAGGAAGCCCAGGAGATTTACACGCA
AGTGCGGAGTTCGCCTGTGAAAGACTTGCGGGTCAAGGCCAAGGCTCTCA
ACCTAGGGGCGGAGGCGATGAAAAAGCTAGGACTTGGTTCTAAGAGTAAT
GTCAACCCCCGCAACATGATCAACTTTGCCTATATTCCCGGACAGATAGA
CGGGAGCTATGGTTTGTATATGAAGGGGAGTAGCAATTCCAACTACGACG
ATGCGCCCACCAAGCCACGGATCGAGTCAGTGGCTCAAGCCTTGGAGCTT
TTGGAAGATGCTGTCATCGCGCAAGGGGTGGGGATAAGCTTTGACACCAT
AAATGCGGCTTTGCGTGCTATCCATCAAGAGATTTTGCGGAGCGACGACT
CGGCCGGCGGACCCAAGCGGAGATTGGCGCCATTGCCTGAAGAAGAACTC
GATGGCCGATGGCGTTGTCGCGTGACATCGTATCAAGAGAACGTGCAATT
TCTGACTAAATTGAATGTGTGGCAGCGAGTGGAAACGGTGGCCGGGACTA
TCACGGGCCAGCTGGTCGTAGCACCATTCGAGGTCATAAGGGACGTAAAC
CTGAAGTACACTTTTGACCCGCTTGCGCGTGTTCTCAATTATGGCGAGCA
GGATAAGATGGCCAGTACGTTTGGTTTGCCTACGGGACTTCCGCATACTT
TGCGTGTCCTGGCGATAAGTGACACTTTGATGGTGACTGCGCGGTCCTCT
GACAAAAAGGGCTCGACGCCGCGGGCTTCCTACGACGCGCGGTTTGCCAT
ATGGACGCGAGCAGGTTGA
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Coding sequence (CDS) from alignment at chr13:617154..618872+

>NO13G02200.1 ID=NO13G02200.1|Name=NO13G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr13:617154..618872+ (Nannochloropsis oceanica)
ATGGTGGGGCTGCTTCGACCTCGTCGATCCTGCGCAGGACTTGTCATCTT
CACACCACTACTCCTCCTGCTCATCGACATTGCCCTGGCCTTCATTTTCC
CCTACGCGGCACCACGACAGCGTACCCGCCCTCTACACGCTCGAGATGGT
GCCGGGGATAAGGAGCGCATTGCCAAGTTTCTGAGGCTGAAAAAGATCAA
GGAAGGAGGAGGAGATTACAATCGGTTGGTCGAAGAGGGAGCCGGCAGCA
GCAATGCGCTTGACGAGGACTTTTACTACGATGACGATAAGAATGGCGAT
GCTGCCGTGGGGAATTTAGGAGACTACTCGGCTGAGGACAAGGAAATGTA
CGACAATTTAAAGCGGCAAGAAAAGCAGGCATTGGTAGATAAGATCCTCA
AGGCCAAAGAAGCGGGGCTAATCAAGCCGTCATCCTCGTCTTCTTCAAGC
GTGCCTAACAAGGGGCAGCCGTCCCCATATCTCTCGCGCAAAATGAAGCA
GGAACAGGAAGTGGAAGAGCGATTCCAGGGCGTTGAGACGTACAAGCCAC
AAAGCTCGTCGTGGGGGGAGTTCGCGCGCCCCAAAAATATTCCTGAGGCT
TTTGGTGGTGGCGTCCATATTCCGGAAGGCGGCGTGAGCCTTAAAGGCGA
CAAGGAATGGCTAGCAAAGTACGACAACCTCATGGCCCAAGTCCGCGAGT
ACAAGAAGGAAGTGCAAGGAACGGTGTTGACCCCCTTGGAAAGGGAGGAC
GAGGAGAGAATCAATGTCGCAAGAGGACAAGCACGGAAATACATGCTGCG
CGGGGAGTACGAGGCCGCCAAAGACGTACTCTTGCCCTTTCGTACAATTT
GCTCGGTGCGCAGTGCCTTAGGGGCTTCGACGCTTATGGATTTGGCAATG
GCTTACGAGGCGCTGTACGAATTCAAGGAAGCCCAGGAGATTTACACGCA
AGTGCGGAGTTCGCCTGTGAAAGACTTGCGGGTCAAGGCCAAGGCTCTCA
ACCTAGGGGCGGAGGCGATGAAAAAGCTAGGACTTGGTTCTAAGAGTAAT
GTCAACCCCCGCAACATGATCAACTTTGCCTATATTCCCGGACAGATAGA
CGGGAGCTATGGTTTGTATATGAAGGGGAGTAGCAATTCCAACTACGACG
ATGCGCCCACCAAGCCACGGATCGAGTCAGTGGCTCAAGCCTTGGAGCTT
TTGGAAGATGCTGTCATCGCGCAAGGGGTGGGGATAAGCTTTGACACCAT
AAATGCGGCTTTGCGTGCTATCCATCAAGAGATTTTGCGGAGCGACGACT
CGGCCGGCGGACCCAAGCGGAGATTGGCGCCATTGCCTGAAGAAGAACTC
GATGGCCGATGGCGTTGTCGCGTGACATCGTATCAAGAGAACGTGCAATT
TCTGACTAAATTGAATGTGTGGCAGCGAGTGGAAACGGTGGCCGGGACTA
TCACGGGCCAGCTGGTCGTAGCACCATTCGAGGTCATAAGGGACGTAAAC
CTGAAGTACACTTTTGACCCGCTTGCGCGTGTTCTCAATTATGGCGAGCA
GGATAAGATGGCCAGTACGTTTGGTTTGCCTACGGGACTTCCGCATACTT
TGCGTGTCCTGGCGATAAGTGACACTTTGATGGTGACTGCGCGGTCCTCT
GACAAAAAGGGCTCGACGCCGCGGGCTTCCTACGACGCGCGGTTTGCCAT
ATGGACGCGAGCAGGTTGA
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Synonyms
Publications