NO13G02150.1, NO13G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02150.1
Unique NameNO13G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2460
Alignment locationchr13:609196..612134 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:609196..612134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02150.1 vs.
Match: EWM21878.1 (40s ribosomal protein s6 [Nannochloropsis gaditana])

HSP 1 Score: 406.4 bits (1043), Expect = 7.800e-110
Identity = 213/242 (88.02%), Postives = 223/242 (92.15%), Query Frame = 0 
Query:   55 MKLNIANPSTGQQHVVEIDDEKRLRAFYDRRISQEVDGVHIGDEFKGYIFRISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVVVKRGEEHVAGLTDSQVPRRLGPKRANKIRKLFNLSKEDDVTKFAISRTFENKKGKTVTKRPSIQRLVTPLTLQRKRQRLAAKKAATAKAKTEAAEYHRIFQQRLNERKESRRSAVSKRRSSRRASAKAE 297
            MKLNIANP TGQQHVVEIDDEKRLRAFYDRRISQEVDG HIGDEFKGY+F+ISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLV+VKRGEE V GLTDS VPRRLGPKRAN IRKLFNLSK+ DVT + + R FENKKGKTV K+P IQRL+TPL LQ KR+RL AKKAAT KAK EAAEYHRIFQQRLNERKESRRSA+SKRRSSRRASAK E
Sbjct:    1 MKLNIANPQTGQQHVVEIDDEKRLRAFYDRRISQEVDGEHIGDEFKGYVFKISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKDADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATTKAKAEAAEYHRIFQQRLNERKESRRSAISKRRSSRRASAKVE 242
The following BLAST results are available for this feature:
BLAST of NO13G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21878.17.800e-11088.0240s ribosomal protein s6 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02150NO13G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02150.1NO13G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02150.1.cds1NO13G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02150.1.cds2NO13G02150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02150.1.cds3NO13G02150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02150.1 ID=NO13G02150.1|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp
TTTGATAAATATCTGCTCATGTTACTTTCTTTTCATTTCGGTTCCCTCCG
GGCACTTGTTGCATGGAACTTACAACTCATTCCGATGTATAAGTGGAGCA
CATTATAATGAGACTAAATTTTGGGTGTACACTGTGTAAACGGAAAATGT
CAGCACCATGCCGGCTCCCATAAGGGTGCGGCTGTCGAGGGAGGAACGCC
GGACGTTAACGGACGCGGAGGCGAGGGCGAAGACTGAGAGCCAGACACAA
ATTCGGATTTTAGTGACAACGGCTACACTTGCAAATAGGAGGGACATGAG
ACCCATGTAGTCGTAGACGTAGGGTTCTTCGACGCCGTCGCGGGCACTAA
GAAGGTGAAAAGGAACGATCTGTGAGCGGTGGGGAATATGAGCAGAACGC
GGAAAAGAATTGCCCCGGCTGCATATTTACCGTAGAGATAGGTAGGGAAA
GACTTGTTTGGACCGCCGTGGGTCGGCATTCTGGGGCTGTGGAGCCGCGT
GGAACGAGACGTGCTGCTGCATTTTGTCTCCACGACCCGACCTTCGCCTC
TATAGCGTTTTTGCGTACCTGGAGAACCTTTCTCCTTGTCCTGGTCGTGG
TGGCTAAATGTGTAATATTTTCTGCTGTAGATATACATATGTTGGTGTGG
TGCATGTGAGTGTGGGTACAAACTTAAATGTTGCCTGCTTAAACGCACCT
GAAGTATTGAGGCAACGGGAACAGGTCGGAGAGATGGCACGACGTCGCTA
GCACAGGCCTGTGTTCTCTCTCGTGCTCCACCCTTCGCTTCCACACAAGC
ATCAGAGAAGAACTTGTCACAATGTCTTTGTCCCCACCTTCCTCATGCCC
GTAGGGCTCAAATTAATTCTGTGCGTCCATCCTCACCCATCCCCTTCAAT
GTAGGCCCCAGAGGTGCAGGGACCTGATCAGGCTGTCGGTTGTGGACGGC
TGTGAGAAGCCTCGCCCCCCCCACTTCCGCCCTCACTTGTTTTCGTCCAA
GAGGAAAGAGGGAACGGCGTTGGCCTTGATCATGGACATCCAGGAGGACT
GTGCATCAGACCTAGGCGAATGCCGTCCATGGGCGCATTTAAATTTCTGC
GTCGTTGGATGGAGAGAGACTATGGAGGAGCACTCCGTCATCAGCACCCA
GCCACCATCCTTACGCTAACGCCATGCCCTGTCCCCCGTACACATCAAAC
AGGAGGCCGTCTCATTTCGGACAACGCCGTTATGAAGCTCAATATTGCCA
ACCCTTCAACGGGCCAGCAACACGTGGTAGAGATTGACGATGAGAAGCGT
CTGCGCGCGTTCTATGACCGACGCATCTCCCAAGAGGTGGATGGCGTGCA
CATCGGAGACGAGTTTAAGGGCTACATCTTCCGAATTTCCGGTGGCAACG
ACAAGCAAGGTTTTCCCATGAAGCAGGGCGTGCTTACGGATCAGCGTGTC
CGCCTCCTCCTCCGTAAGGGTCTCTCCTGCTATCGCGCGCGCCGAAAGGG
CGAGCGTAAGCGCAAGTCCGTGCGTGGTGCCATCGTGGGGCCCGACCTTT
CGGTCCTGAACCTAGTAGTGGTGAAGCGAGGGGAGGAGCACGTGGCCGGC
TTGACCGACAGCCAGGTGCCGCGTCGTCTGGGCCCAAAGCGCGCTAATAA
GATACGCAAGCTCTTCAACTTGTCTAAGGAGGATGATGTGACCAAGTTCG
CAATCTCCCGCACATTCGAGAACAAGAAGGGCAAGACCGTTACTAAGCGG
CCCAGCATCCAGCGACTTGTCACGCCCCTCACCCTGCAGCGCAAGCGACA
GCGTTTGGCAGCTAAGAAGGCAGCGACTGCCAAGGCTAAGACAGAGGCAG
CTGAATACCATCGTATCTTCCAGCAGCGCCTCAACGAGCGTAAGGAGTCT
CGTCGTTCTGCCGTTTCCAAGCGTCGGTCCTCTAGACGTGCCTCGGCCAA
GGCCGAGTAAGACTCAGACTTGACTTGCGATGTGGTGCTGACTTGAAAGA
AAGAAGGATAGACTTTTGGGTAGGGTGTTACGCGTCATCGATCACGGGGT
TTTGATTTTGGTCGGGAATAGAACTGGGACACGCGCTTGATCAGAAATAG
AGAAGAGACGCTGGGCATCAACATTGCAGGACATCAACAGCAAGAGAAGA
GTGAGGTGGGAGGGCCAATCGGGAACGAAGAGGCGCTGGTTGTTAGTGAT
GGCTTTTTCGTTTTCTCAAGGTCGGAAGGAACATGATGGGGTGCGAGAGT
GGCTTGGCGTGCTCAACTGGAGCCCTGGGGGTACTAAAGGCTATACGAGA
CGACAAAATCCAGACTAGTACACCATTTACAACAGCGGCAGCTGCAGTAG
CAACAACAACAACGACGACAACAACAAGCAGAACAACAAAAAGAAGAAGA
TGAAGAACAAGAACAAGAACAAGAACAACAACAACAACAACATCAACATC
AACAACACAA
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protein sequence of NO13G02150.1

>NO13G02150.1-protein ID=NO13G02150.1-protein|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MPSMGAFKFLRRWMERDYGGALRHQHPATILTLTPCPVPRTHQTGGRLIS
DNAVMKLNIANPSTGQQHVVEIDDEKRLRAFYDRRISQEVDGVHIGDEFK
GYIFRISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKS
VRGAIVGPDLSVLNLVVVKRGEEHVAGLTDSQVPRRLGPKRANKIRKLFN
LSKEDDVTKFAISRTFENKKGKTVTKRPSIQRLVTPLTLQRKRQRLAAKK
AATAKAKTEAAEYHRIFQQRLNERKESRRSAVSKRRSSRRASAKAE*
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mRNA from alignment at chr13:609196..612134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02150.1 ID=NO13G02150.1|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2939bp|location=Sequence derived from alignment at chr13:609196..612134- (Nannochloropsis oceanica)
TTTGATAAATATCTGCTCATGTTACTTTCTTTTCATTTCGGTTCCCTCCG
GGCACTTGTTGCATGGAACTTACAACTCATTCCGATGTATAAGTGGAGCA
CATTATAATGAGACTAAATTTTGGGTGTACACTGTGTAAACGGAAAATGT
CAGCACCATGCCGGCTCCCATAAGGGTGCGGCTGTCGAGGGAGGAACGCC
GGACGTTAACGGACGCGGAGGCGAGGGCGAAGACTGAGAGCCAGACACAA
ATTCGGATTTTAGTGACAACGGCTACACTTGCAAATAGGAGGGACATGAG
ACCCATGTAGTCGTAGACGTAGGGTTCTTCGACGCCGTCGCGGGCACTAA
GAAGGTGAAAAGGAACGATCTGTGAGCGGTGGGGAATATGAGCAGAACGC
GGAAAAGAATTGCCCCGGCTGCATATTTACCGTAGAGATAGGTAGGGAAA
GACTTGTTTGGACCGCCGTGGGTCGGCATTCTGGGGCTGTGGAGCCGCGT
GGAACGAGACGTGCTGCTGCATTTTGTCTCCACGACCCGACCTTCGCCTC
TATAGCGTTTTTGCGTACCTGGAGAACCTTTCTCCTTGTCCTGGTCGTGG
TGGCTAAATGTGTAATATTTTCTGCTGTAGATATACATATGTTGGTGTGG
TGCATGTGAGTGTGGGTACAAACTTAAATGTTGCCTGCTTAAACGCACCT
GAAGTATTGAGGCAACGGGAACAGGTCGGAGAGATGGCACGACGTCGCTA
GCACAGGCCTGTGTTCTCTCTCGTGCTCCACCCTTCGCTTCCACACAAGC
ATCAGAGAAGAACTTGTCACAATGTCTTTGTCCCCACCTTCCTCATGCCC
GTAGGGCTCAAATTAATTCTGTGCGTCCATCCTCACCCATCCCCTTCAAT
GTAGGCCCCAGAGGTGCAGGGACCTGATCAGGCTGTCGGTTGTGGACGGC
TGTGAGAAGCCTCGCCCCCCCCACTTCCGCCCTCACTTGTTTTCGTCCAA
GAGGAAAGAGGGAACGGCGTTGGCCTTGATCATGGACATCCAGGAGGACT
GTGCATCAGACCTAGGCGAATGCCGTCCATGGGCGCATTTAAATTTCTGC
GTCGTTGGATGGAGAGAGACTATGGAGGAGCACTCCGTCATCAGCACCCA
GCCACCATCCTTACGCTAACGCCATGCCCTGTCCCCCGTACACATCAAAC
AGGAGGCCGTCTCATTTCGGACAACGCCGTTATGAAGGTAAGCATGCGTC
TTGTGTGCGTCTGCAATATCTCCTCCATTTCTTCCCTCTCATGGGTAGAG
GTATGACCACTCACTCACTTGCTGCCCTCCCTCCCTATCCTTTCCTCGTC
CACAGCTCAATATTGCCAACCCTTCAACGGGCCAGCAACACGTGGTAGAG
ATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACCGACGCATCTCCCA
AGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAGGGCTACATCTTCC
GAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCATGAAGCAGGGCGTG
CTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGGGTCTCTCCTGCTA
TCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCCGTGCGTGGTGCCA
TCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGTGGTGAAGCGAGGG
GAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGCCGCGTCGTCTGGG
CCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAACTTGTCTAAGGAGG
ATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGAGAACAAGAAGGGC
AAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTGTCACGCCCCTCAC
CCTGCAGGTTCGCGACTGGGATGGAGAAAGAGAAGAACAAGGAGGAGGAA
GAGAGGGAGGAGGGTTGAAAAGATGATAAAACACCATGTCACAGACCTGT
TCTGAAAACCTGGGGGGCGGAGGGGGGACTCAAGGAAGGAGGGACGTGGA
AGGAAGAGGGGTTGAATAAATCTCTCTTCTTTCAACCCTCCTTTGCCTCC
TTCGTCTGCTTCCCGCTACGTGTGTGACACAACATGCACCACTATCTGAT
CAACACTGTGCATCCGCATTCAACACATATGCATCGCGCTCTGATCGAAT
GAATGATCCCTGCTGTTACTCACTCGTTTTCCCTTTTTCCGCCCTTCGCC
CCACTCAAACACTGACAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAGGC
AGCGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTTCC
AGCAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCAAG
CGTCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAAGACTCAGACTT
GACTTGCGATGTGGTGCTGACTTGAAAGAAAGAAGGATAGACTTTTGGGT
AGGGTGTTACGCGTCATCGATCACGGGGTTTTGATTTTGGTCGGGAATAG
AACTGGGACACGCGCTTGATCAGAAATAGAGAAGAGACGCTGGGCATCAA
CATTGCAGGACATCAACAGCAAGAGAAGAGTGAGGTGGGAGGGCCAATCG
GGAACGAAGAGGCGCTGGTTGTTAGTGATGGCTTTTTCGTTTTCTCAAGG
TCGGAAGGAACATGATGGGGTGCGAGAGTGGCTTGGCGTGCTCAACTGGA
GCCCTGGGGGTACTAAAGGCTATACGAGACGACAAAATCCAGACTAGTAC
ACCATTTACAACAGCGGCAGCTGCAGTAGCAACAACAACAACGACGACAA
CAACAAGCAGAACAACAAAAAGAAGAAGATGAAGAACAAGAACAAGAACA
AGAACAACAACAACAACAACATCAACATCAACAACACAA
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Coding sequence (CDS) from alignment at chr13:609196..612134-

>NO13G02150.1 ID=NO13G02150.1|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr13:609196..612134- (Nannochloropsis oceanica)
ATGCCGTCCATGGGCGCATTTAAATTTCTGCGTCGTTGGATGGAGAGAGA
CTATGGAGGAGCACTCCGTCATCAGCACCCAGCCACCATCCTTACGCTAA
CGCCATGCCCTGTCCCCCGTACACATCAAACAGGAGGCCGTCTCATTTCG
GACAACGCCGTTATGAAGCTCAATATTGCCAACCCTTCAACGGGCCAGCA
ACACGTGGTAGAGATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACC
GACGCATCTCCCAAGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAG
GGCTACATCTTCCGAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCAT
GAAGCAGGGCGTGCTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGG
GTCTCTCCTGCTATCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCC
GTGCGTGGTGCCATCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGT
GGTGAAGCGAGGGGAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGC
CGCGTCGTCTGGGCCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAAC
TTGTCTAAGGAGGATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGA
GAACAAGAAGGGCAAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTG
TCACGCCCCTCACCCTGCAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAG
GCAGCGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTT
CCAGCAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCA
AGCGTCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAA
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Synonyms
Publications