NO13G02140.2, NO13G02140.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02140.2
Unique NameNO13G02140.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1553
Alignment locationchr13:606589..608267 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:606589..608267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02140.2 vs.
Match: EWM21882.1 (epidermal retinol dehydrogenase 2 [Nannochloropsis gaditana])

HSP 1 Score: 413.3 bits (1061), Expect = 5.100e-112
Identity = 200/236 (84.75%), Postives = 222/236 (94.07%), Query Frame = 0
Query:    1 MQAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLKEQ 237
            M+AVA+E+E  GA+  TYKVDV+KRERVYEVAKQMR ++GK V+VLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWT+KAFLPAMV+ NHGHIIT+ASTAGLVGVDGLADYCTSK+AAI+FHEGIRTE+RRLK PG+RMTLVNPYFIDTGMFTGAKTKAPILLPILQP+YV  SI++AAEKNRNLL +PRY YIL +TNGVPALVRDFIYDFMG+GENM DFKQTRTK+LKEQ
Sbjct:  153 MKAVAREVEGIGARVFTYKVDVSKRERVYEVAKQMRKDVGKSVSVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTIKAFLPAMVEANHGHIITVASTAGLVGVDGLADYCTSKAAAISFHEGIRTEVRRLKRPGIRMTLVNPYFIDTGMFTGAKTKAPILLPILQPEYVATSIIDAAEKNRNLLNLPRYTYILMVTNGVPALVRDFIYDFMGIGENMADFKQTRTKSLKEQ 388          
The following BLAST results are available for this feature:
BLAST of NO13G02140.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21882.15.100e-11284.75epidermal retinol dehydrogenase 2 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02140NO13G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02140.2NO13G02140.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02140.2.cds1NO13G02140.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02140.2 ID=NO13G02140.2|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
ACAGCAACGAGCCGCACCGAGTACTTCTTGCTTCCTCGTCAGCCTCGAGC
AAGTTGCGCCTCTTCTATTCGAATCGACAAGCCGGCACGCGTGAAAATGA
GCCCATGGAAAGACATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTT
GTGGAGTGCCTGGGTGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGA
GTACTTTGATCTCTTGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCG
TCCTCATCACAGGTGGTGCAAGTGGGATAGGGCGCCTCATGGCCTTGAAG
GTAAGTGACGTGCGTGCTTGTTTGCGGTGGGTTATCTTAGGCAATGCACG
GGGTATCTTTGTTCCTCGGATCATGCATTTCTTCTCGAGCGTATCTGTGT
CCACCCCCTTTCCCTTCGGACAGAGTAGAACGAGGTGTTCGGGGCGTACT
TTTCTGGTTCTCTCTCCCTCCCATTCTCTCCCTGCCTCACATGACGCTCA
CGAATTACCCCCGACGTAAAATTCTCTTCTCTCTCATCCTTCTCACACCC
AATAAATATAGTTTGCCGCCTATGAGAACACCACCGTCATTATCTGGGAT
CTAAACGAGACGAGCATGCAAGCGGTGGCCAAGGAAATCGAAGCCCAGGG
GGCCCAGGCCCTGACGTACAAGGTAGACGTGACCAAACGCGAGCGTGTCT
ACGAGGTAGCGAAGCAGATGAGGGCTGAAATTGGGAAGGATGTGACAGTG
CTGGTCAACAACGCGGGGATTGTGGCCGGCAAGCCTTTCCTGGAGGGAGA
CGATGCTTACTCATTGAAGACAATGGAGGTGAACGTGATTGCGCATTTTT
GGACGGTCAAGGCCTTCTTGCCCGCAATGGTGCAGATGAATCACGGACAC
ATTATCACGATTGCCAGCACGGCGGGTTTAGTGGGGGTGGACGGCCTGGC
GGACTACTGCACGAGCAAGTCGGCGGCCATTGCCTTCCATGAGGGGATCC
GCACTGAGATCCGTCGGTTGAAATGCCCGGGAGTGAGGATGACGTTGGTC
AACCCCTACTTTATCGACACAGGCATGTTCACCGGTGCTAAGACCAAGGC
CCCTATTTTGCTCCCTATCTTACAACCCGACTATGTCGTCAATTCGATTT
TGAACGCGGCGGAGAAGAATCGGAATCTGCTGGTGATGCCTCGATATGCC
TACATCTTGACCATGACGAATGGTGTGCCGGCCTTGGTTCGCGATTTCAT
CTACGACTTTATGGGCGTCGGTGAAAACATGACGGACTTTAAGCAGACAC
GGACTAAGACCTTGAAGGAACAGTAGGAAGGAAGGGAGGGGAGGGGGAGG
AGGATTCTAGACGTGCACAGAACAGAAAACGCAAGCAGCATAAGCATTAA
TGGGGAAGAAGAGAGAGAGAAAGTACCATGGAAATTCTCGACTCACGTCA
CAAAGACTATAGGACCAATAACTTGCCGGGTCGCAGCGGTAGTACACTGT
CATGAGTGCACAGTCTGATTGATTGTAAATACATATTTGGCTGAATAATC
AGC
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protein sequence of NO13G02140.2

>NO13G02140.2-protein ID=NO13G02140.2-protein|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MQAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNA
GIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIA
STAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFI
DTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTM
TNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLKEQ*
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mRNA from alignment at chr13:606589..608267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02140.2 ID=NO13G02140.2|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1679bp|location=Sequence derived from alignment at chr13:606589..608267- (Nannochloropsis oceanica)
ACAGCAACGAGCCGCACCGAGTACTTCTTGCTTCCTCGTCAGCCTCGAGC AAGTTGCGCCTCTTCTATTCGAATCGACAAGCCGGCACGCGTGAAAATGA GCCCATGGAAAGACATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTT GTGGAGTGCCTGGGTGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGA GTACTTTGATCTCTTGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCG TCCTCATCACAGGTATGAAGTCGAATGCTGTCTCTGCCATTGCCTGGATT GGGGGGGAGGGGTGTCAAGCTTATGGGCAATGTCTCTAAATATTGTGTCT GATTCCTCTCTCTCTACCTTTTCTGATCTCACACACAGGTGGTGCAAGTG GGATAGGGCGCCTCATGGCCTTGAAGGTAAGTGACGTGCGTGCTTGTTTG CGGTGGGTTATCTTAGGCAATGCACGGGGTATCTTTGTTCCTCGGATCAT GCATTTCTTCTCGAGCGTATCTGTGTCCACCCCCTTTCCCTTCGGACAGA GTAGAACGAGGTGTTCGGGGCGTACTTTTCTGGTTCTCTCTCCCTCCCAT TCTCTCCCTGCCTCACATGACGCTCACGAATTACCCCCGACGTAAAATTC TCTTCTCTCTCATCCTTCTCACACCCAATAAATATAGTTTGCCGCCTATG AGAACACCACCGTCATTATCTGGGATCTAAACGAGACGAGCATGCAAGCG GTGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGGT AGACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGGG CTGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCGGGGATTGTG GCCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATTGAAGACAAT GGAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCCG CAATGGTGCAGATGAATCACGGACACATTATCACGATTGCCAGCACGGCG GGTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAGCAAGTCGGC GGCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAAT GCCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATCGACACAGGC ATGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCCTATCTTACA ACCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGAAGAATCGGA ATCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATGACGAATGGT GTGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGGCGTCGGTGA AAACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGAAGGAACAGT AGGAAGGAAGGGAGGGGAGGGGGAGGAGGATTCTAGACGTGCACAGAACA GAAAACGCAAGCAGCATAAGCATTAATGGGGAAGAAGAGAGAGAGAAAGT ACCATGGAAATTCTCGACTCACGTCACAAAGACTATAGGACCAATAACTT GCCGGGTCGCAGCGGTAGTACACTGTCATGAGTGCACAGTCTGATTGATT GTAAATACATATTTGGCTGAATAATCAGC
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Coding sequence (CDS) from alignment at chr13:606589..608267-

>NO13G02140.2 ID=NO13G02140.2|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr13:606589..608267- (Nannochloropsis oceanica)
ATGCAAGCGGTGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGAC
GTACAAGGTAGACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGC
AGATGAGGGCTGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCG
GGGATTGTGGCCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATT
GAAGACAATGGAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCT
TCTTGCCCGCAATGGTGCAGATGAATCACGGACACATTATCACGATTGCC
AGCACGGCGGGTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAG
CAAGTCGGCGGCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTC
GGTTGAAATGCCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATC
GACACAGGCATGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCC
TATCTTACAACCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGA
AGAATCGGAATCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATG
ACGAATGGTGTGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGG
CGTCGGTGAAAACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGA
AGGAACAGTAG
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Synonyms
Publications