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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:606589..608267 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02140.2 vs.
Match: EWM21882.1 (epidermal retinol dehydrogenase 2 [Nannochloropsis gaditana]) HSP 1 Score: 413.3 bits (1061), Expect = 5.100e-112 Identity = 200/236 (84.75%), Postives = 222/236 (94.07%), Query Frame = 0
Query: 1 MQAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLKEQ 237
M+AVA+E+E GA+ TYKVDV+KRERVYEVAKQMR ++GK V+VLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWT+KAFLPAMV+ NHGHIIT+ASTAGLVGVDGLADYCTSK+AAI+FHEGIRTE+RRLK PG+RMTLVNPYFIDTGMFTGAKTKAPILLPILQP+YV SI++AAEKNRNLL +PRY YIL +TNGVPALVRDFIYDFMG+GENM DFKQTRTK+LKEQ
Sbjct: 153 MKAVAREVEGIGARVFTYKVDVSKRERVYEVAKQMRKDVGKSVSVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTIKAFLPAMVEANHGHIITVASTAGLVGVDGLADYCTSKAAAISFHEGIRTEVRRLKRPGIRMTLVNPYFIDTGMFTGAKTKAPILLPILQPEYVATSIIDAAEKNRNLLNLPRYTYILMVTNGVPALVRDFIYDFMGIGENMADFKQTRTKSLKEQ 388
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02140.2 ID=NO13G02140.2|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp ACAGCAACGAGCCGCACCGAGTACTTCTTGCTTCCTCGTCAGCCTCGAGC AAGTTGCGCCTCTTCTATTCGAATCGACAAGCCGGCACGCGTGAAAATGA GCCCATGGAAAGACATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTT GTGGAGTGCCTGGGTGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGA GTACTTTGATCTCTTGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCG TCCTCATCACAGGTGGTGCAAGTGGGATAGGGCGCCTCATGGCCTTGAAG GTAAGTGACGTGCGTGCTTGTTTGCGGTGGGTTATCTTAGGCAATGCACG GGGTATCTTTGTTCCTCGGATCATGCATTTCTTCTCGAGCGTATCTGTGT CCACCCCCTTTCCCTTCGGACAGAGTAGAACGAGGTGTTCGGGGCGTACT TTTCTGGTTCTCTCTCCCTCCCATTCTCTCCCTGCCTCACATGACGCTCA CGAATTACCCCCGACGTAAAATTCTCTTCTCTCTCATCCTTCTCACACCC AATAAATATAGTTTGCCGCCTATGAGAACACCACCGTCATTATCTGGGAT CTAAACGAGACGAGCATGCAAGCGGTGGCCAAGGAAATCGAAGCCCAGGG GGCCCAGGCCCTGACGTACAAGGTAGACGTGACCAAACGCGAGCGTGTCT ACGAGGTAGCGAAGCAGATGAGGGCTGAAATTGGGAAGGATGTGACAGTG CTGGTCAACAACGCGGGGATTGTGGCCGGCAAGCCTTTCCTGGAGGGAGA CGATGCTTACTCATTGAAGACAATGGAGGTGAACGTGATTGCGCATTTTT GGACGGTCAAGGCCTTCTTGCCCGCAATGGTGCAGATGAATCACGGACAC ATTATCACGATTGCCAGCACGGCGGGTTTAGTGGGGGTGGACGGCCTGGC GGACTACTGCACGAGCAAGTCGGCGGCCATTGCCTTCCATGAGGGGATCC GCACTGAGATCCGTCGGTTGAAATGCCCGGGAGTGAGGATGACGTTGGTC AACCCCTACTTTATCGACACAGGCATGTTCACCGGTGCTAAGACCAAGGC CCCTATTTTGCTCCCTATCTTACAACCCGACTATGTCGTCAATTCGATTT TGAACGCGGCGGAGAAGAATCGGAATCTGCTGGTGATGCCTCGATATGCC TACATCTTGACCATGACGAATGGTGTGCCGGCCTTGGTTCGCGATTTCAT CTACGACTTTATGGGCGTCGGTGAAAACATGACGGACTTTAAGCAGACAC GGACTAAGACCTTGAAGGAACAGTAGGAAGGAAGGGAGGGGAGGGGGAGG AGGATTCTAGACGTGCACAGAACAGAAAACGCAAGCAGCATAAGCATTAA TGGGGAAGAAGAGAGAGAGAAAGTACCATGGAAATTCTCGACTCACGTCA CAAAGACTATAGGACCAATAACTTGCCGGGTCGCAGCGGTAGTACACTGT CATGAGTGCACAGTCTGATTGATTGTAAATACATATTTGGCTGAATAATC AGC back to topprotein sequence of NO13G02140.2 >NO13G02140.2-protein ID=NO13G02140.2-protein|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp MQAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNA GIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIA STAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFI DTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTM TNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLKEQ* back to topmRNA from alignment at chr13:606589..608267- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02140.2 ID=NO13G02140.2|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1679bp|location=Sequence derived from alignment at chr13:606589..608267- (Nannochloropsis oceanica) ACAGCAACGAGCCGCACCGAGTACTTCTTGCTTCCTCGTCAGCCTCGAGC
AAGTTGCGCCTCTTCTATTCGAATCGACAAGCCGGCACGCGTGAAAATGA
GCCCATGGAAAGACATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTT
GTGGAGTGCCTGGGTGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGA
GTACTTTGATCTCTTGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCG
TCCTCATCACAGGTATGAAGTCGAATGCTGTCTCTGCCATTGCCTGGATT
GGGGGGGAGGGGTGTCAAGCTTATGGGCAATGTCTCTAAATATTGTGTCT
GATTCCTCTCTCTCTACCTTTTCTGATCTCACACACAGGTGGTGCAAGTG
GGATAGGGCGCCTCATGGCCTTGAAGGTAAGTGACGTGCGTGCTTGTTTG
CGGTGGGTTATCTTAGGCAATGCACGGGGTATCTTTGTTCCTCGGATCAT
GCATTTCTTCTCGAGCGTATCTGTGTCCACCCCCTTTCCCTTCGGACAGA
GTAGAACGAGGTGTTCGGGGCGTACTTTTCTGGTTCTCTCTCCCTCCCAT
TCTCTCCCTGCCTCACATGACGCTCACGAATTACCCCCGACGTAAAATTC
TCTTCTCTCTCATCCTTCTCACACCCAATAAATATAGTTTGCCGCCTATG
AGAACACCACCGTCATTATCTGGGATCTAAACGAGACGAGCATGCAAGCG
GTGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGGT
AGACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGGG
CTGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCGGGGATTGTG
GCCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATTGAAGACAAT
GGAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCCG
CAATGGTGCAGATGAATCACGGACACATTATCACGATTGCCAGCACGGCG
GGTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAGCAAGTCGGC
GGCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAAT
GCCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATCGACACAGGC
ATGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCCTATCTTACA
ACCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGAAGAATCGGA
ATCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATGACGAATGGT
GTGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGGCGTCGGTGA
AAACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGAAGGAACAGT
AGGAAGGAAGGGAGGGGAGGGGGAGGAGGATTCTAGACGTGCACAGAACA
GAAAACGCAAGCAGCATAAGCATTAATGGGGAAGAAGAGAGAGAGAAAGT
ACCATGGAAATTCTCGACTCACGTCACAAAGACTATAGGACCAATAACTT
GCCGGGTCGCAGCGGTAGTACACTGTCATGAGTGCACAGTCTGATTGATT
GTAAATACATATTTGGCTGAATAATCAGC back to topCoding sequence (CDS) from alignment at chr13:606589..608267- >NO13G02140.2 ID=NO13G02140.2|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr13:606589..608267- (Nannochloropsis oceanica) ATGCAAGCGGTGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGAC GTACAAGGTAGACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGC AGATGAGGGCTGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCG GGGATTGTGGCCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATT GAAGACAATGGAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCT TCTTGCCCGCAATGGTGCAGATGAATCACGGACACATTATCACGATTGCC AGCACGGCGGGTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAG CAAGTCGGCGGCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTC GGTTGAAATGCCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATC GACACAGGCATGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCC TATCTTACAACCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGA AGAATCGGAATCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATG ACGAATGGTGTGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGG CGTCGGTGAAAACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGA AGGAACAGTAG back to top
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