NO13G02130.2, NO13G02130.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02130.2
Unique NameNO13G02130.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1069
Alignment locationchr13:604713..605918 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:604713..605918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02130.2 vs.
Match: EWM26450.1 (60s acidic ribosomal protein p2 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 9.000e-19
Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = 0
Query:    1 MNVVASFLLLKLAGKD-PKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSVSMGGGGGGG--GVAAPAAAAAGAPPAAVKEEK-EEEADLGGAMDMFGVS 111
            M  +A++LLLKL G + P A+D+T  +S+ G EADE ++  L+K++EGKDVE L++EG   L +   GGGGGGG    AAP AA AGA     KEEK EEEADLGGAMDMFGVS
Sbjct:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFGVS 133          
The following BLAST results are available for this feature:
BLAST of NO13G02130.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26450.19.000e-1957.0260s acidic ribosomal protein p2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02130NO13G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02130.2NO13G02130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02130.2.cds1NO13G02130.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02130.2.cds2NO13G02130.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02130.2 ID=NO13G02130.2|Name=NO13G02130.2|organism=Nannochloropsis oceanica|type=mRNA|length=1069bp
CCGTCCGCGGGCCTGGAGCACCTGGAATGGAGGAAGATTGCGAGACAAAA
AGTAAGCGAGCAGCTATCTAGGGGGTGAGAATGCGATTGCGGTATTGCAT
GGACATGGCCAGCAAGGACGTGTTTAGGATTCTGCGAAACAAGGCCAGCT
CCTGAGGCTCATTCTATATCATCCTGTGGCTGGTTCTCCTCTGCTTTCCA
TGTCGCGTGCATGCCTGACTCTGACTAGATCAATGGCCAGACCATACCAC
ACAGACATGACATCTCTTAGGTCTAGGAGAAAAGCAGCGTAAGACTGAGG
CCTTCACAAGCTCGTCCATCTGGACTCTTTCATCGACCGTGCGCCCACCA
TGGCGCAAAGGAAGAAAGCAGCGTCTCACTTTCCTTACCCGACAACACCT
ATGTATCATATATCTCACAGCCAAAACCATGAACGTTGTAGCTTCCTTCT
TGCTTCTCAAGCTCGCGGGGAAGGATCCCAAGGCCGCAGACATCACTGCC
CTTATTAGTTCTACCGGTGGGGAGGCGGATGAGGCCAAGGTGGAGCTTTT
GATGAAGGAGATAGAGGGCAAGGACGTAGAGGAGCTGCTGAAGGAGGGCA
AGGACAAGCTTAAGAGCGTCTCTATGGGCGGGGGTGGGGGTGGGGGTGGG
GTTGCGGCCCCGGCGGCTGCGGCAGCTGGTGCACCGCCTGCTGCGGTAAA
GGAGGAGAAGGAGGAGGAAGCGGACCTGGGCGGGGCCATGGACATGTTTG
GGGTAAGTGAATGAGCGGGGGGAAATGGTTGACTGAGTTTCCTCTTTCTT
TGCCGTCCTTTCTCTTTTTTCCTGACCGTTCGTATGTGGTGTGGCGATGT
CCTTTGACACAACACTCGTTTCCCTCTCCCTCTTGTTTTTCTCTTCCTTC
TCAGGGCGGCGGCGATGGATACTAAATTCAGCGTGGCCGGATGATCGGAA
GGGATTTTCCAGCAGGCTTGAGACCGGAAGAGGGGGAAAAAAGTTATGCC
GTTCTAATCGTGGGAAGGAGAGTAGAGCTTAGTCCAGGCAACTTGGAAAA
GTTAACTAATATTTCCTGG
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protein sequence of NO13G02130.2

>NO13G02130.2-protein ID=NO13G02130.2-protein|Name=NO13G02130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDV
EELLKEGKDKLKSVSMGGGGGGGGVAAPAAAAAGAPPAAVKEEKEEEADL
GGAMDMFGVSE*
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mRNA from alignment at chr13:604713..605918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02130.2 ID=NO13G02130.2|Name=NO13G02130.2|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp|location=Sequence derived from alignment at chr13:604713..605918+ (Nannochloropsis oceanica)
CCGTCCGCGGGCCTGGAGCACCTGGAATGGAGGAAGATTGCGAGACAAAA AGTAAGCGAGCAGCTATCTAGGGGGTGAGAATGCGATTGCGGTATTGCAT GGACATGGCCAGCAAGGACGTGTTTAGGATTCTGCGAAACAAGGCCAGCT CCTGAGGCTCATTCTATATCATCCTGTGGCTGGTTCTCCTCTGCTTTCCA TGTCGCGTGCATGCCTGACTCTGACTAGATCAATGGCCAGACCATACCAC ACAGACATGACATCTCTTAGGTCTAGGAGAAAAGCAGCGTAAGACTGAGG CCTTCACAAGCTCGTCCATCTGGACTCTTTCATCGACCGTGCGCCCACCA TGGCGCAAAGGAAGAAAGCAGCGTCTCACTTTCCTTACCCGACAACACCT ATGTATCATATATCTCACAGCCAAAACCATGAACGTTGTAGCTTCCTTCT TGCTTCTCAAGCTCGCGGGGAAGGATCCCAAGGCCGCAGACATCACTGCC CTTATTAGTTCTACCGGTGGGGAGGCGGATGAGGCCAAGGTGGAGCTTTT GATGAAGGAGATAGAGGGCAAGGACGTAGAGGAGCTGCTGAAGGAGGGCA AGGACAAGCTTAAGAGCGTCTCTATGGGCGGGGGTGGGGGTGGGGGTGGG GTTGCGGCCCCGGCGGCTGCGGCAGCTGGTGCACCGCCTGCTGCGGTAAA GGTGGGTGCTTGGTTGGGTCAGGGAAGAGGGAATGCAGAAGCGACGAGCA CGTGTCGCCCATCTTGCGTTCTTGCTACCGTGTCATCATGCTCGCTTTTT AAACCCTCTACACCATCTTACTCTATATCTATCCACAGGAGGAGAAGGAG GAGGAAGCGGACCTGGGCGGGGCCATGGACATGTTTGGGGTAAGTGAATG AGCGGGGGGAAATGGTTGACTGAGTTTCCTCTTTCTTTGCCGTCCTTTCT CTTTTTTCCTGACCGTTCGTATGTGGTGTGGCGATGTCCTTTGACACAAC ACTCGTTTCCCTCTCCCTCTTGTTTTTCTCTTCCTTCTCAGGGCGGCGGC GATGGATACTAAATTCAGCGTGGCCGGATGATCGGAAGGGATTTTCCAGC AGGCTTGAGACCGGAAGAGGGGGAAAAAAGTTATGCCGTTCTAATCGTGG GAAGGAGAGTAGAGCTTAGTCCAGGCAACTTGGAAAAGTTAACTAATATT TCCTGG
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Coding sequence (CDS) from alignment at chr13:604713..605918+

>NO13G02130.2 ID=NO13G02130.2|Name=NO13G02130.2|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at chr13:604713..605918+ (Nannochloropsis oceanica)
ATGAACGTTGTAGCTTCCTTCTTGCTTCTCAAGCTCGCGGGGAAGGATCC
CAAGGCCGCAGACATCACTGCCCTTATTAGTTCTACCGGTGGGGAGGCGG
ATGAGGCCAAGGTGGAGCTTTTGATGAAGGAGATAGAGGGCAAGGACGTA
GAGGAGCTGCTGAAGGAGGGCAAGGACAAGCTTAAGAGCGTCTCTATGGG
CGGGGGTGGGGGTGGGGGTGGGGTTGCGGCCCCGGCGGCTGCGGCAGCTG
GTGCACCGCCTGCTGCGGTAAAGGAGGAGAAGGAGGAGGAAGCGGACCTG
GGCGGGGCCATGGACATGTTTGGGGTAAGTGAATGA
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Synonyms
Publications