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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:592118..595103 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02090.1 vs.
Match: XP_013993142.1 (PREDICTED: calphotin-like isoform X1 [Salmo salar]) HSP 1 Score: 159.5 bits (402), Expect = 1.800e-35 Identity = 169/330 (51.21%), Postives = 206/330 (62.42%), Query Frame = 0
Query: 11 SATVAMVAASSANAQGPFLRSI-----FGNNKEPIKQEPASPAEANAPAQPEAVPMDPTG------------------VVIFAATVVDPLALPEAPIAPLA--KAPVEPIAP--EVLAPAALKAPRVETPTAAV----DSVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDP 310
S T V AS A G + + G EP + + A + +P A P+D +V+ VV+P+A + + P+A K VEP+A V+ P A P VE P AAV + VA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V P+V+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+P
Sbjct: 175 SETTTEVPASVEEAVGELIAKLTAEPTVGPTVEPASEVQSEEAAVESVLEPVAKPVDSVSEEPAVWPAAVEAIELVVQLVVAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVATVKPVVE-PVAAVIPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPIVEPVATVKPVVEPVATVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEP 503
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02090.1 ID=NO13G02090.1|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2986bp CGCGTTTTCCCGGCCCACGTAGCATTTCTTTCTTTCATCTGGAGAACAAA TTGTGGAAGAAGACCGGTTCTACAAATTTGCTAGGATGACTTGGTGGCGT CAGTCCATAGGCGTTGTGCATCTGACCCTGGAGTGCTGGAGCAGGGGAAC CAGGGGAATGGTAATAGTAGAGGGTTGATAACACGACGACGATGAAGGGG AGTAAGAGGAGCAGCCAACCAGGACAACCAAGGGTACGGTCGAGAGCACC TGACTCAGCAAGTCTTACCCATTTGACAGTCAAATTACCACATGGGTGCG CAAGACTGTCACGAAATGCAACTTGGCCAGGGACATGGTAGTGGTCAATG ACGGGGCCGAGGCTGGGGGCGTGGGATCCACCGGCGTGGTACGCCCGTTA TCGGGCTGCTTGGACTTTGGGGCCGTTCCCCATGATGAAAGACTGTCGGC GTGTAAGATATGGACGTGGCTGAGGGCAGGGCCTAAGACGGCTTGACCAT CAAGGGGAGGTCAACTTCGAGGCAGAGCGAGCGCGTATTGGACATTGTCC TGGCTACATATTGAAACTCAATAACAACAACGCGGGGCCCACCTCTACGC AGAAAAGCGCGTTGCAGTCACAGGGAGCAAGATGCTCAGCCAGATCCACC CGCAGGAACCCATCGAATCTATGGCGGAGCTCATCGCATGTCTCGAAAGC AATTGAAGACCGTCTATCCCATCGTCTTGCACGCAGTTAACCGGAAATAT GTGATCATCAGCGTGCAGCTCTAAAGGCGAAGTATTTCTTCTCAAGCTTC CGCATCTCTACAAATTGAATAGGAGGTTTATCGGCTCAGCCAAGCAGCTG CAGACAAGGATTGAATGCTCGAGGCTGAGACTCGAACCTCCTCAGGGCCC GAAGTCGACTTCTCCCGTATGGGTGGCGTCCAGGTCCTCCTCATCAATTG TGCCGTCGCCCATAAATCAGGCCACCTTGTCCCCATAGAAATAAAAATCC TACCTTAAATTGTCCACCCTCACATCCTTGACAGCAAATGTGCGCAACAA CAACGCGTCGACGCATGGCGATGGCAACCTCCTCCTCTGGAGGGATGTTT AACGTGCCATGGCGTCGCTGTTCTGTTATCGCTTGTGAGAGGATGCCGCG AAGGACCAGTGTCCCAATTCCTTTAAGGGCTTTTCATCATCCGCCGGCCC TGGGAGACAGGACAAGCGTGTACCAAGTCCCCGTGGAGATCCAGCAATTA TAACGCAGTTTTTATGCAATTCTCTAGTACAAATAATCAATAATTGCTCC CCCTTCCTCCGTGAGCACAGCACCCACCTAGAACAGTCTGATCTCTTCCC AACACCAGCACGAATATCCTCCTCATCCCACGCAAGCAAAATGGCACGAA TAATCTATGCGGCATCGAGTAGTGCAGCCTGCTGCTGACCGCTTAGCGCA AAGCTCTGGCCCCCATGTTTGGCTCACCTCCTCCCCGCTCCCCATCGTAC ACGATACAGCTTCTTCGCTCTTCCAAGCCTCCCGGTACCGAACGCCATGC GTGTTTTCAGTCGTCGCATACTTCTATCGGCCACGGTGGCCATGGTTGCT GCTTCGAGTGCCAATGCCCAAGGCCCTTTCCTTCGGTCCATTTTTGGGAA TAATAAAGAACCCATCAAACAAGAGCCTGCTTCACCAGCCGAGGCCAATG CCCCTGCCCAGCCGGAAGCGGTGCCCATGGATCCGACAGGTGTCGTGATA TTTGCTGCTACTGTCGTTGATCCCCTAGCTCTCCCGGAGGCGCCGATCGC CCCTTTGGCCAAGGCGCCAGTTGAGCCCATCGCCCCCGAAGTCCTTGCAC CTGCCGCGCTCAAAGCACCCAGGGTTGAGACTCCGACCGCTGCTGTTGAC TCTGTTGCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACC TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC CCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT CCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTCCGGTGACGCC TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGAT CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC TGTGGTTGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTC CCGTGACACCTGTGGTTGACCCAGGGCAGCCGGCCGTGCAACGCAAGAAG AAGACCCTCAAGGAGATTTTTGGGTTTTAGTGCGAGCATTAGGAGGCGGA GTCGGGGGGGGAAAATTGGGGAGGGAGAAAGCTCGAATGTCGTGTGGCAA AAAAGTACAATAGGGAAAGGAGCTTGATGTGACCCTGGGGCATGACAGCA AACAACATGGAATATATTGAAAGGAACGAGAGAAGCAATAGTTCAACAGT AAGTATAAGAATGCACATACATACGACCCGCTAGAAACACTTGATTATCG AAACGCACACACAGAGGATGTGAAAATAGCATTGGAGTGCAAGAAAAAGG AGAGGATCTCTGGAGATTGTATGTGCGTGGGTGTATCGATGTGCTATGGG ATGGACGGCGTATTGAAGGACAGTTAGGGGACGGCTTCACCTCAACCACA GTTGATTCGTGCAAGCTTATAGAGAGCGAATTTAATATGCACGAACACAC ATAGCATGAGCCTAAGTCAACACTACACTGTCTGGT back to topprotein sequence of NO13G02090.1 >NO13G02090.1-protein ID=NO13G02090.1-protein|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp MRVFSRRILLSATVAMVAASSANAQGPFLRSIFGNNKEPIKQEPASPAEA NAPAQPEAVPMDPTGVVIFAATVVDPLALPEAPIAPLAKAPVEPIAPEVL APAALKAPRVETPTAAVDSVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV APVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV APVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV APVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV APVTPVVDPGQPAVQRKKKTLKEIFGF* back to topmRNA from alignment at chr13:592118..595103- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02090.1 ID=NO13G02090.1|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2986bp|location=Sequence derived from alignment at chr13:592118..595103- (Nannochloropsis oceanica) CGCGTTTTCCCGGCCCACGTAGCATTTCTTTCTTTCATCTGGAGAACAAA
TTGTGGAAGAAGACCGGTTCTACAAATTTGCTAGGATGACTTGGTGGCGT
CAGTCCATAGGCGTTGTGCATCTGACCCTGGAGTGCTGGAGCAGGGGAAC
CAGGGGAATGGTAATAGTAGAGGGTTGATAACACGACGACGATGAAGGGG
AGTAAGAGGAGCAGCCAACCAGGACAACCAAGGGTACGGTCGAGAGCACC
TGACTCAGCAAGTCTTACCCATTTGACAGTCAAATTACCACATGGGTGCG
CAAGACTGTCACGAAATGCAACTTGGCCAGGGACATGGTAGTGGTCAATG
ACGGGGCCGAGGCTGGGGGCGTGGGATCCACCGGCGTGGTACGCCCGTTA
TCGGGCTGCTTGGACTTTGGGGCCGTTCCCCATGATGAAAGACTGTCGGC
GTGTAAGATATGGACGTGGCTGAGGGCAGGGCCTAAGACGGCTTGACCAT
CAAGGGGAGGTCAACTTCGAGGCAGAGCGAGCGCGTATTGGACATTGTCC
TGGCTACATATTGAAACTCAATAACAACAACGCGGGGCCCACCTCTACGC
AGAAAAGCGCGTTGCAGTCACAGGGAGCAAGATGCTCAGCCAGATCCACC
CGCAGGAACCCATCGAATCTATGGCGGAGCTCATCGCATGTCTCGAAAGC
AATTGAAGACCGTCTATCCCATCGTCTTGCACGCAGTTAACCGGAAATAT
GTGATCATCAGCGTGCAGCTCTAAAGGCGAAGTATTTCTTCTCAAGCTTC
CGCATCTCTACAAATTGAATAGGAGGTTTATCGGCTCAGCCAAGCAGCTG
CAGACAAGGATTGAATGCTCGAGGCTGAGACTCGAACCTCCTCAGGGCCC
GAAGTCGACTTCTCCCGTATGGGTGGCGTCCAGGTCCTCCTCATCAATTG
TGCCGTCGCCCATAAATCAGGCCACCTTGTCCCCATAGAAATAAAAATCC
TACCTTAAATTGTCCACCCTCACATCCTTGACAGCAAATGTGCGCAACAA
CAACGCGTCGACGCATGGCGATGGCAACCTCCTCCTCTGGAGGGATGTTT
AACGTGCCATGGCGTCGCTGTTCTGTTATCGCTTGTGAGAGGATGCCGCG
AAGGACCAGTGTCCCAATTCCTTTAAGGGCTTTTCATCATCCGCCGGCCC
TGGGAGACAGGACAAGCGTGTACCAAGTCCCCGTGGAGATCCAGCAATTA
TAACGCAGTTTTTATGCAATTCTCTAGTACAAATAATCAATAATTGCTCC
CCCTTCCTCCGTGAGCACAGCACCCACCTAGAACAGTCTGATCTCTTCCC
AACACCAGCACGAATATCCTCCTCATCCCACGCAAGCAAAATGGCACGAA
TAATCTATGCGGCATCGAGTAGTGCAGCCTGCTGCTGACCGCTTAGCGCA
AAGCTCTGGCCCCCATGTTTGGCTCACCTCCTCCCCGCTCCCCATCGTAC
ACGATACAGCTTCTTCGCTCTTCCAAGCCTCCCGGTACCGAACGCCATGC
GTGTTTTCAGTCGTCGCATACTTCTATCGGCCACGGTGGCCATGGTTGCT
GCTTCGAGTGCCAATGCCCAAGGCCCTTTCCTTCGGTCCATTTTTGGGAA
TAATAAAGAACCCATCAAACAAGAGCCTGCTTCACCAGCCGAGGCCAATG
CCCCTGCCCAGCCGGAAGCGGTGCCCATGGATCCGACAGGTGTCGTGATA
TTTGCTGCTACTGTCGTTGATCCCCTAGCTCTCCCGGAGGCGCCGATCGC
CCCTTTGGCCAAGGCGCCAGTTGAGCCCATCGCCCCCGAAGTCCTTGCAC
CTGCCGCGCTCAAAGCACCCAGGGTTGAGACTCCGACCGCTGCTGTTGAC
TCTGTTGCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACC
TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC
CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT
CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC
TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC
CCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT
CCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTCCGGTGACGCC
TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC
CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGAT
CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC
TGTGGTTGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTC
CCGTGACACCTGTGGTTGACCCAGGGCAGCCGGCCGTGCAACGCAAGAAG
AAGACCCTCAAGGAGATTTTTGGGTTTTAGTGCGAGCATTAGGAGGCGGA
GTCGGGGGGGGAAAATTGGGGAGGGAGAAAGCTCGAATGTCGTGTGGCAA
AAAAGTACAATAGGGAAAGGAGCTTGATGTGACCCTGGGGCATGACAGCA
AACAACATGGAATATATTGAAAGGAACGAGAGAAGCAATAGTTCAACAGT
AAGTATAAGAATGCACATACATACGACCCGCTAGAAACACTTGATTATCG
AAACGCACACACAGAGGATGTGAAAATAGCATTGGAGTGCAAGAAAAAGG
AGAGGATCTCTGGAGATTGTATGTGCGTGGGTGTATCGATGTGCTATGGG
ATGGACGGCGTATTGAAGGACAGTTAGGGGACGGCTTCACCTCAACCACA
GTTGATTCGTGCAAGCTTATAGAGAGCGAATTTAATATGCACGAACACAC
ATAGCATGAGCCTAAGTCAACACTACACTGTCTGGT back to topCoding sequence (CDS) from alignment at chr13:592118..595103- >NO13G02090.1 ID=NO13G02090.1|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr13:592118..595103- (Nannochloropsis oceanica) ATGCGTGTTTTCAGTCGTCGCATACTTCTATCGGCCACGGTGGCCATGGT TGCTGCTTCGAGTGCCAATGCCCAAGGCCCTTTCCTTCGGTCCATTTTTG GGAATAATAAAGAACCCATCAAACAAGAGCCTGCTTCACCAGCCGAGGCC AATGCCCCTGCCCAGCCGGAAGCGGTGCCCATGGATCCGACAGGTGTCGT GATATTTGCTGCTACTGTCGTTGATCCCCTAGCTCTCCCGGAGGCGCCGA TCGCCCCTTTGGCCAAGGCGCCAGTTGAGCCCATCGCCCCCGAAGTCCTT GCACCTGCCGCGCTCAAAGCACCCAGGGTTGAGACTCCGACCGCTGCTGT TGACTCTGTTGCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGA CACCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTC GCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGT TGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGA CACCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTC GCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGT TGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTCCGGTGA CGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTC GCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGT TGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGA CACCTGTGGTTGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTC GCTCCCGTGACACCTGTGGTTGACCCAGGGCAGCCGGCCGTGCAACGCAA GAAGAAGACCCTCAAGGAGATTTTTGGGTTTTAG back to top
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