NO13G02090.1, NO13G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02090.1
Unique NameNO13G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2986
Alignment locationchr13:592118..595103 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:592118..595103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02090.1 vs.
Match: XP_013993142.1 (PREDICTED: calphotin-like isoform X1 [Salmo salar])

HSP 1 Score: 159.5 bits (402), Expect = 1.800e-35
Identity = 169/330 (51.21%), Postives = 206/330 (62.42%), Query Frame = 0
Query:   11 SATVAMVAASSANAQGPFLRSI-----FGNNKEPIKQEPASPAEANAPAQPEAVPMDPTG------------------VVIFAATVVDPLALPEAPIAPLA--KAPVEPIAP--EVLAPAALKAPRVETPTAAV----DSVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDP 310
            S T   V AS   A G  +  +      G   EP  +  +  A   +  +P A P+D                     +V+    VV+P+A  +  + P+A  K  VEP+A    V+ P A   P VE P AAV    + VA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V P+V+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+PVA V PVV+P
Sbjct:  175 SETTTEVPASVEEAVGELIAKLTAEPTVGPTVEPASEVQSEEAAVESVLEPVAKPVDSVSEEPAVWPAAVEAIELVVQLVVAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVATVKPVVE-PVAAVIPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPIVEPVATVKPVVEPVATVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEPVAAVKPVVEP 503          
The following BLAST results are available for this feature:
BLAST of NO13G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_013993142.11.800e-3551.21PREDICTED: calphotin-like isoform X1 [Salmo salar][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02090NO13G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02090.1NO13G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02090.1.cds1NO13G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02090.1 ID=NO13G02090.1|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2986bp
CGCGTTTTCCCGGCCCACGTAGCATTTCTTTCTTTCATCTGGAGAACAAA
TTGTGGAAGAAGACCGGTTCTACAAATTTGCTAGGATGACTTGGTGGCGT
CAGTCCATAGGCGTTGTGCATCTGACCCTGGAGTGCTGGAGCAGGGGAAC
CAGGGGAATGGTAATAGTAGAGGGTTGATAACACGACGACGATGAAGGGG
AGTAAGAGGAGCAGCCAACCAGGACAACCAAGGGTACGGTCGAGAGCACC
TGACTCAGCAAGTCTTACCCATTTGACAGTCAAATTACCACATGGGTGCG
CAAGACTGTCACGAAATGCAACTTGGCCAGGGACATGGTAGTGGTCAATG
ACGGGGCCGAGGCTGGGGGCGTGGGATCCACCGGCGTGGTACGCCCGTTA
TCGGGCTGCTTGGACTTTGGGGCCGTTCCCCATGATGAAAGACTGTCGGC
GTGTAAGATATGGACGTGGCTGAGGGCAGGGCCTAAGACGGCTTGACCAT
CAAGGGGAGGTCAACTTCGAGGCAGAGCGAGCGCGTATTGGACATTGTCC
TGGCTACATATTGAAACTCAATAACAACAACGCGGGGCCCACCTCTACGC
AGAAAAGCGCGTTGCAGTCACAGGGAGCAAGATGCTCAGCCAGATCCACC
CGCAGGAACCCATCGAATCTATGGCGGAGCTCATCGCATGTCTCGAAAGC
AATTGAAGACCGTCTATCCCATCGTCTTGCACGCAGTTAACCGGAAATAT
GTGATCATCAGCGTGCAGCTCTAAAGGCGAAGTATTTCTTCTCAAGCTTC
CGCATCTCTACAAATTGAATAGGAGGTTTATCGGCTCAGCCAAGCAGCTG
CAGACAAGGATTGAATGCTCGAGGCTGAGACTCGAACCTCCTCAGGGCCC
GAAGTCGACTTCTCCCGTATGGGTGGCGTCCAGGTCCTCCTCATCAATTG
TGCCGTCGCCCATAAATCAGGCCACCTTGTCCCCATAGAAATAAAAATCC
TACCTTAAATTGTCCACCCTCACATCCTTGACAGCAAATGTGCGCAACAA
CAACGCGTCGACGCATGGCGATGGCAACCTCCTCCTCTGGAGGGATGTTT
AACGTGCCATGGCGTCGCTGTTCTGTTATCGCTTGTGAGAGGATGCCGCG
AAGGACCAGTGTCCCAATTCCTTTAAGGGCTTTTCATCATCCGCCGGCCC
TGGGAGACAGGACAAGCGTGTACCAAGTCCCCGTGGAGATCCAGCAATTA
TAACGCAGTTTTTATGCAATTCTCTAGTACAAATAATCAATAATTGCTCC
CCCTTCCTCCGTGAGCACAGCACCCACCTAGAACAGTCTGATCTCTTCCC
AACACCAGCACGAATATCCTCCTCATCCCACGCAAGCAAAATGGCACGAA
TAATCTATGCGGCATCGAGTAGTGCAGCCTGCTGCTGACCGCTTAGCGCA
AAGCTCTGGCCCCCATGTTTGGCTCACCTCCTCCCCGCTCCCCATCGTAC
ACGATACAGCTTCTTCGCTCTTCCAAGCCTCCCGGTACCGAACGCCATGC
GTGTTTTCAGTCGTCGCATACTTCTATCGGCCACGGTGGCCATGGTTGCT
GCTTCGAGTGCCAATGCCCAAGGCCCTTTCCTTCGGTCCATTTTTGGGAA
TAATAAAGAACCCATCAAACAAGAGCCTGCTTCACCAGCCGAGGCCAATG
CCCCTGCCCAGCCGGAAGCGGTGCCCATGGATCCGACAGGTGTCGTGATA
TTTGCTGCTACTGTCGTTGATCCCCTAGCTCTCCCGGAGGCGCCGATCGC
CCCTTTGGCCAAGGCGCCAGTTGAGCCCATCGCCCCCGAAGTCCTTGCAC
CTGCCGCGCTCAAAGCACCCAGGGTTGAGACTCCGACCGCTGCTGTTGAC
TCTGTTGCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACC
TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC
CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT
CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC
TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC
CCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT
CCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTCCGGTGACGCC
TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC
CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGAT
CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC
TGTGGTTGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTC
CCGTGACACCTGTGGTTGACCCAGGGCAGCCGGCCGTGCAACGCAAGAAG
AAGACCCTCAAGGAGATTTTTGGGTTTTAGTGCGAGCATTAGGAGGCGGA
GTCGGGGGGGGAAAATTGGGGAGGGAGAAAGCTCGAATGTCGTGTGGCAA
AAAAGTACAATAGGGAAAGGAGCTTGATGTGACCCTGGGGCATGACAGCA
AACAACATGGAATATATTGAAAGGAACGAGAGAAGCAATAGTTCAACAGT
AAGTATAAGAATGCACATACATACGACCCGCTAGAAACACTTGATTATCG
AAACGCACACACAGAGGATGTGAAAATAGCATTGGAGTGCAAGAAAAAGG
AGAGGATCTCTGGAGATTGTATGTGCGTGGGTGTATCGATGTGCTATGGG
ATGGACGGCGTATTGAAGGACAGTTAGGGGACGGCTTCACCTCAACCACA
GTTGATTCGTGCAAGCTTATAGAGAGCGAATTTAATATGCACGAACACAC
ATAGCATGAGCCTAAGTCAACACTACACTGTCTGGT
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protein sequence of NO13G02090.1

>NO13G02090.1-protein ID=NO13G02090.1-protein|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MRVFSRRILLSATVAMVAASSANAQGPFLRSIFGNNKEPIKQEPASPAEA
NAPAQPEAVPMDPTGVVIFAATVVDPLALPEAPIAPLAKAPVEPIAPEVL
APAALKAPRVETPTAAVDSVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV
APVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV
APVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV
APVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPVAPVTPVVDPV
APVTPVVDPGQPAVQRKKKTLKEIFGF*
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mRNA from alignment at chr13:592118..595103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02090.1 ID=NO13G02090.1|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2986bp|location=Sequence derived from alignment at chr13:592118..595103- (Nannochloropsis oceanica)
CGCGTTTTCCCGGCCCACGTAGCATTTCTTTCTTTCATCTGGAGAACAAA TTGTGGAAGAAGACCGGTTCTACAAATTTGCTAGGATGACTTGGTGGCGT CAGTCCATAGGCGTTGTGCATCTGACCCTGGAGTGCTGGAGCAGGGGAAC CAGGGGAATGGTAATAGTAGAGGGTTGATAACACGACGACGATGAAGGGG AGTAAGAGGAGCAGCCAACCAGGACAACCAAGGGTACGGTCGAGAGCACC TGACTCAGCAAGTCTTACCCATTTGACAGTCAAATTACCACATGGGTGCG CAAGACTGTCACGAAATGCAACTTGGCCAGGGACATGGTAGTGGTCAATG ACGGGGCCGAGGCTGGGGGCGTGGGATCCACCGGCGTGGTACGCCCGTTA TCGGGCTGCTTGGACTTTGGGGCCGTTCCCCATGATGAAAGACTGTCGGC GTGTAAGATATGGACGTGGCTGAGGGCAGGGCCTAAGACGGCTTGACCAT CAAGGGGAGGTCAACTTCGAGGCAGAGCGAGCGCGTATTGGACATTGTCC TGGCTACATATTGAAACTCAATAACAACAACGCGGGGCCCACCTCTACGC AGAAAAGCGCGTTGCAGTCACAGGGAGCAAGATGCTCAGCCAGATCCACC CGCAGGAACCCATCGAATCTATGGCGGAGCTCATCGCATGTCTCGAAAGC AATTGAAGACCGTCTATCCCATCGTCTTGCACGCAGTTAACCGGAAATAT GTGATCATCAGCGTGCAGCTCTAAAGGCGAAGTATTTCTTCTCAAGCTTC CGCATCTCTACAAATTGAATAGGAGGTTTATCGGCTCAGCCAAGCAGCTG CAGACAAGGATTGAATGCTCGAGGCTGAGACTCGAACCTCCTCAGGGCCC GAAGTCGACTTCTCCCGTATGGGTGGCGTCCAGGTCCTCCTCATCAATTG TGCCGTCGCCCATAAATCAGGCCACCTTGTCCCCATAGAAATAAAAATCC TACCTTAAATTGTCCACCCTCACATCCTTGACAGCAAATGTGCGCAACAA CAACGCGTCGACGCATGGCGATGGCAACCTCCTCCTCTGGAGGGATGTTT AACGTGCCATGGCGTCGCTGTTCTGTTATCGCTTGTGAGAGGATGCCGCG AAGGACCAGTGTCCCAATTCCTTTAAGGGCTTTTCATCATCCGCCGGCCC TGGGAGACAGGACAAGCGTGTACCAAGTCCCCGTGGAGATCCAGCAATTA TAACGCAGTTTTTATGCAATTCTCTAGTACAAATAATCAATAATTGCTCC CCCTTCCTCCGTGAGCACAGCACCCACCTAGAACAGTCTGATCTCTTCCC AACACCAGCACGAATATCCTCCTCATCCCACGCAAGCAAAATGGCACGAA TAATCTATGCGGCATCGAGTAGTGCAGCCTGCTGCTGACCGCTTAGCGCA AAGCTCTGGCCCCCATGTTTGGCTCACCTCCTCCCCGCTCCCCATCGTAC ACGATACAGCTTCTTCGCTCTTCCAAGCCTCCCGGTACCGAACGCCATGC GTGTTTTCAGTCGTCGCATACTTCTATCGGCCACGGTGGCCATGGTTGCT GCTTCGAGTGCCAATGCCCAAGGCCCTTTCCTTCGGTCCATTTTTGGGAA TAATAAAGAACCCATCAAACAAGAGCCTGCTTCACCAGCCGAGGCCAATG CCCCTGCCCAGCCGGAAGCGGTGCCCATGGATCCGACAGGTGTCGTGATA TTTGCTGCTACTGTCGTTGATCCCCTAGCTCTCCCGGAGGCGCCGATCGC CCCTTTGGCCAAGGCGCCAGTTGAGCCCATCGCCCCCGAAGTCCTTGCAC CTGCCGCGCTCAAAGCACCCAGGGTTGAGACTCCGACCGCTGCTGTTGAC TCTGTTGCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACC TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC CCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGTTGAT CCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTCCGGTGACGCC TGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTC CCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGAT CCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGACACC TGTGGTTGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTC CCGTGACACCTGTGGTTGACCCAGGGCAGCCGGCCGTGCAACGCAAGAAG AAGACCCTCAAGGAGATTTTTGGGTTTTAGTGCGAGCATTAGGAGGCGGA GTCGGGGGGGGAAAATTGGGGAGGGAGAAAGCTCGAATGTCGTGTGGCAA AAAAGTACAATAGGGAAAGGAGCTTGATGTGACCCTGGGGCATGACAGCA AACAACATGGAATATATTGAAAGGAACGAGAGAAGCAATAGTTCAACAGT AAGTATAAGAATGCACATACATACGACCCGCTAGAAACACTTGATTATCG AAACGCACACACAGAGGATGTGAAAATAGCATTGGAGTGCAAGAAAAAGG AGAGGATCTCTGGAGATTGTATGTGCGTGGGTGTATCGATGTGCTATGGG ATGGACGGCGTATTGAAGGACAGTTAGGGGACGGCTTCACCTCAACCACA GTTGATTCGTGCAAGCTTATAGAGAGCGAATTTAATATGCACGAACACAC ATAGCATGAGCCTAAGTCAACACTACACTGTCTGGT
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Coding sequence (CDS) from alignment at chr13:592118..595103-

>NO13G02090.1 ID=NO13G02090.1|Name=NO13G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr13:592118..595103- (Nannochloropsis oceanica)
ATGCGTGTTTTCAGTCGTCGCATACTTCTATCGGCCACGGTGGCCATGGT
TGCTGCTTCGAGTGCCAATGCCCAAGGCCCTTTCCTTCGGTCCATTTTTG
GGAATAATAAAGAACCCATCAAACAAGAGCCTGCTTCACCAGCCGAGGCC
AATGCCCCTGCCCAGCCGGAAGCGGTGCCCATGGATCCGACAGGTGTCGT
GATATTTGCTGCTACTGTCGTTGATCCCCTAGCTCTCCCGGAGGCGCCGA
TCGCCCCTTTGGCCAAGGCGCCAGTTGAGCCCATCGCCCCCGAAGTCCTT
GCACCTGCCGCGCTCAAAGCACCCAGGGTTGAGACTCCGACCGCTGCTGT
TGACTCTGTTGCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGA
CACCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTC
GCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGT
TGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGA
CACCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTC
GCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTAACGCCTGTGGT
TGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTCGCTCCGGTGA
CGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTC
GCTCCCGTGACGCCTGTGGTTGATCCTGTCGCTCCCGTGACACCTGTGGT
TGATCCTGTCGCTCCCGTGACACCTGTGGTTGATCCTGTCGCTCCCGTGA
CACCTGTGGTTGATCCTGTCGCTCCGGTGACGCCTGTGGTTGATCCTGTC
GCTCCCGTGACACCTGTGGTTGACCCAGGGCAGCCGGCCGTGCAACGCAA
GAAGAAGACCCTCAAGGAGATTTTTGGGTTTTAG
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Synonyms
Publications