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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:584785..587390 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02070.2 vs.
Match: XP_005855658.1 (hypothetical protein NGA_0623000 [Nannochloropsis gaditana CCMP526]; EKU20706.1 hypothetical protein NGA_0623000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 623.6 bits (1607), Expect = 5.000e-175 Identity = 314/387 (81.14%), Postives = 332/387 (85.79%), Query Frame = 0
Query: 15 LLVLLLVVVLPVLDAFLAPCSA--LAGRSMPSSSSTHSRPAANLRMTTNIPTTSHTPLLDGEIEVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDTLGYPSAVADFEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPLAPAVRKELYMASSEHIPLYTESTFVNIDTLFLLVDAYLFAQLVEYKDRQPSQIKHSYATMYAHIRQCVDLCHRDGVIKDRVAENPGDYIIPDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGNHGPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVASADGSLRNVDGVEEPVDEFLAAGKVFQGGNWKYLLEMLKLKSGDNVLYVGDHMYRSVAREEMS 400
L+++L + + AF APC A L GR S + ++RM+ P LLDGE EVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDT YP AVA FEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPL AVRK LYMASSE+IPLYTESTFVNIDTLFLLVDAYLFAQLVEYKDR PS+IKHSYA +Y+HIRQCVDLCHRDGVIKDRVAE+PG YI+PDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGN GPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVA ADGSLRNVDGVE PVD FLA GKVFQGGNWK+LLEMLKL SGDNVLYVGDHMY + R + S
Sbjct: 14 LVMVLSSIASLTVQAFTAPCRASQLLGRRSVQLPSPPTFSVGSIRMSAGSPPRDDKYLLDGETEVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDTFRYPEAVASFEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPLPSAVRKSLYMASSENIPLYTESTFVNIDTLFLLVDAYLFAQLVEYKDRHPSEIKHSYAAIYSHIRQCVDLCHRDGVIKDRVAEDPGAYIVPDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGNKGPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVAPADGSLRNVDGVEGPVDAFLAQGKVFQGGNWKHLLEMLKLTSGDNVLYVGDHMYSDILRSKRS 400
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02070.2 ID=NO13G02070.2|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2500bp GGCGCCCTTTCCAGCGATGGGAAGATCGGGCACTCCTTTTTTCATTTCTT TGGAGCGCGTGCACTCGTGTCCTCTGGGCGAGGGCTTTTTATGGCGCATC GAGGCGGGCACTGTACCGTGCAGAGCATCACATCCCATGGACATGGCGCT CAGGTCTCCTGCACTTGGATATGTTTCGGGGCTCTGTCCCCGTGCTCGGT CGTTCGGGTACTTTCCGCTTGCCTTTATTATAACACGACTCGTCACTAGA CTTCACAAAGTGGATGGCTTTGAGTGTACATAACTAGGAAGTACCGGTGG TGGTGGTGGTAGCTTTCTTGCTCTCTATAGCCCGCCTCGATTATTTTCAT CATCGCTTATCGCACCTAAGCCTTCCCCACCCCTTCCTTTCTTTCCTTTC ACAGAGCGAGTCCCATCACGCACGGCGTTAACAAGGGCGATGGTGTCCCT TCACCGGAGGTCACAGCAAAAGGTCATGGTGCTACTGGTGCTGCTGCTGG TGGTCGTGCTGCCGGTATTGGACGCTTTTCTTGCTCCGTGCAGCGCCCTC GCAGGGAGGTCAATGCCCTCCTCCTCCTCGACCCACAGCCGCCCCGCGGC AAACCTGCGTATGACAACCAACATCCCGACAACCAGTCACACTCCATTAT TAGACGGGGAAATCGAGGTATTTTGCAACCGGGAGATCAACATGCAGCAG ATTCGGGCCATTGGCTTTGACATGGACTACACCCTTGCGCAATACAACCT GGCATTTGAGCTCCTCGCCTACGACGGAGCCAAACAAAAGCTTGTAGACA CCCTGGGGTACCCTTCCGCGGTCGCCGATTTCGAGTATGACTCAACCTAC TTCCGGAGAGGGCTGGTCATTGACAAGGAGCGAGGCAACGTCATAAAGAT GGACCGACACAAGTACGTCCGACAAGCCTACCACGGCTTTTCTCCCCTCG CGCCCGCAGTCCGAAAAGAGCTCTACATGGCCAGTTCGGAGCATATTCCG CTGTACACTGAGAGTACATTTGTCAACATTGACACTCTCTTCTTGCTGGT CGACGCCTACCTCTTCGCGCAGCTCGTGGAGTACAAAGACAGACAGCCCT CCCAGATCAAGCATTCCTATGCTACCATGTACGCGCACATCCGTCAATGC GTCGACTTGTGCCATCGCGACGGCGTGATCAAAGACCGTGTGGCTGAGAA TCCGGGAGATTACATTATTCCTGACCCTGGGATGGTAACGATGCTGGAGC AATATAAGGAGAGTGGGCGGAAGACGTTTTTGGTCACGAATAGCTTGTGG GAGTACACGGACGTGGTCATGAACTTCCTCGTGGGAAATCACGGCCCGCG CAACCAGGACTGGCTCGATCTGTTCGAAGTCGTCATTGTCGGTAGCCGGA AGCCGGCCTTCCTTGAGGATAGATCCGCGTATATGATGCGTGTCGCCTCT GCTGATGGCTCTTTGCGGAACGTGGACGGGGTAGAAGAACCCGTGGATGA ATTTCTTGCGGCAGGCAAGGTGTTTCAGGGCGGAAATTGGAAGTACCTGC TGGAAATGCTGAAATTGAAATCCGGGGACAACGTGTTATATGTGGGAGAT CACATGTATAGGTCGGTGGCGAGGGAGGAAATGAGTGATATAGTAGGAAG GCTGTATATGTCGAGTAATCCATTTTTTCCGATGTTCTTATACTTATCTT CCCTCCGTCTCTTCGTACCTTTATCCCTCGCTATCTCCTTCTCCAGTGAT ATTTTGAGAAGTAAACGTAGCCTGGGGTGGAGAACATGCTTAGTGATTCC CGAGCTAGCGGAGGAGGTTGCTTCTTTGCAGCGGTATGCCGACATGGACG CTGGCTTGCAAGAATTAAGGAGGTGAGAGAGGGGGAAAGAGAGGGACGAA GTGTATGGGGAAGGGAATGTGAAAGGGAAAGTCGAAGACTGCATTTTCTT TGCACACCTTTAGGAGTGCTTCATGCTTACCTCTTCCCGTCCCCTTTCCT TTATCAAAATTCTTTCTTCGACGCAAGACGGCGGCTATCAATGGACGAGG AAATCGACGCTATTTACAAGGCCATCCGCGCCCATCGTGTTAAAGGCGAT GCTGAAAGCGGGCAAGAAAAAATGAAGACTGAGCCCTCACCGGAGCTCAA AAAGCTGAATAGACAACTGCAAGACTTGGAAGAGGGTGGGGAAAGGTTGG ATGAGACAATCAAAACGGCCTGCTTGGCTTATCATTATAAATTTCACCCG GTCTGGGGGAAGCTATTTGAAGCAGGTTTTCAGGAGAGTCGGTTTGCCAA GCAGGTATCGACGTATGCCTGTATTTATACGACGAAGGCGTCAAATCTTG GGATGGTTAGCCCCGAGAGATGGTTTAGAACGGTGCGGGATAGCTTGCCG CACGATGTTTATCTTGCTTTGGGCTTGGGAGGGAAAAGGTAGGGGGAAAT ATTTGTTTCCCCAATAGATGTACAAAAAGCAATCACTATACCGGCATCAT back to topprotein sequence of NO13G02070.2 >NO13G02070.2-protein ID=NO13G02070.2-protein|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp MVSLHRRSQQKVMVLLVLLLVVVLPVLDAFLAPCSALAGRSMPSSSSTHS RPAANLRMTTNIPTTSHTPLLDGEIEVFCNREINMQQIRAIGFDMDYTLA QYNLAFELLAYDGAKQKLVDTLGYPSAVADFEYDSTYFRRGLVIDKERGN VIKMDRHKYVRQAYHGFSPLAPAVRKELYMASSEHIPLYTESTFVNIDTL FLLVDAYLFAQLVEYKDRQPSQIKHSYATMYAHIRQCVDLCHRDGVIKDR VAENPGDYIIPDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGN HGPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVASADGSLRNVDGVEE PVDEFLAAGKVFQGGNWKYLLEMLKLKSGDNVLYVGDHMYRSVAREEMSD IVGRLYMSSNPFFPMFLYLSSLRLFVPLSLAISFSSDILRSKRSLGWRTC LVIPELAEEVASLQRYADMDAGLQELRR* back to topmRNA from alignment at chr13:584785..587390+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02070.2 ID=NO13G02070.2|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp|location=Sequence derived from alignment at chr13:584785..587390+ (Nannochloropsis oceanica) GGCGCCCTTTCCAGCGATGGGAAGATCGGGCACTCCTTTTTTCATTTCTT
TGGAGCGCGTGCACTCGTGTCCTCTGGGCGAGGGCTTTTTATGGCGCATC
GAGGCGGGCACTGTACCGTGCAGAGCATCACATCCCATGGACATGGCGCT
CAGGTCTCCTGCACTTGGATATGTTTCGGGGCTCTGTCCCCGTGCTCGGT
CGTTCGGGTACTTTCCGCTTGCCTTTATTATAACACGACTCGTCACTAGA
CTTCACAAAGTGGATGGCTTTGAGTGTACATAACTAGGAAGTACCGGTGG
TGGTGGTGGTAGCTTTCTTGCTCTCTATAGCCCGCCTCGATTATTTTCAT
CATCGCTTATCGCACCTAAGCCTTCCCCACCCCTTCCTTTCTTTCCTTTC
ACAGAGCGAGTCCCATCACGCACGGCGTTAACAAGGGCGATGGTGTCCCT
TCACCGGAGGTCACAGCAAAAGGTCATGGTGCTACTGGTGCTGCTGCTGG
TGGTCGTGCTGCCGGTATTGGACGCTTTTCTTGCTCCGTGCAGCGCCCTC
GCAGGGAGGTCAATGCCCTCCTCCTCCTCGACCCACAGCCGCCCCGCGGC
AAACCTGCGTATGACAACCAACATCCCGACAACCAGTCACACTCCATTAT
TAGACGGGGAAATCGAGGTATTTTGCAACCGGGAGATCAACATGCAGCAG
ATTCGGGCCATTGGCTTTGACATGGACTACACCCTTGCGCAATACAACCT
GGCATTTGAGCTCCTCGCCTACGACGGAGCCAAACAAAAGCTTGTAGACA
CCCTGGGGTACCCTTCCGCGGTCGCCGATTTCGAGTATGACTCAACCTAC
TTCCGGAGAGGGCTGGTCATTGACAAGGAGCGAGGCAACGTCATAAAGAT
GGACCGACACAAGTACGTCCGACAAGCCTACCACGGCTTTTCTCCCCTCG
CGCCCGCAGTCCGAAAAGAGCTCTACATGGCCAGTTCGGAGCATATTCCG
CTGTACACTGAGAGTACATTTGTCAACATTGACACTCTCTTCTTGCTGGT
CGACGCCTACCTCTTCGCGCAGCTCGTGGAGTACAAAGACAGACAGCCCT
CCCAGATCAAGCATTCCTATGCTACCATGTACGCGCACATCCGTCAATGC
GTCGACTTGTGCCATCGCGACGGCGTGATCAAAGACCGTGTGGCTGAGAA
TCCGGGAGATTACATTATTCCTGACCCTGGGATGGTAACGATGCTGGAGC
AATATAAGGAGAGTGGGCGGAAGACGTTTTTGGTCACGAATAGCTTGTGG
GAGTACACGGACGTGGTACGGAAAAAAAAGGGGAGGAGATGTGTTGAGTC
AAGGGGCCCTCATTTTCATGTGTTGTAAATCATTCTTCCTCTTCCCCTCC
TTTTCCCTTTCTCCCCCTCAGGTCATGAACTTCCTCGTGGGAAATCACGG
CCCGCGCAACCAGGACTGGCTCGATCTGTTCGAAGTCGTCATTGTCGGTA
GCCGGAAGCCGGCCTTCCTTGAGGATAGATCCGCGTATATGATGCGTGTC
GCCTCTGCTGATGGCTCTTTGCGGAACGTGGACGGGGTAGAAGAACCCGT
GGATGAATTTCTTGCGGCAGGCAAGGTGTTTCAGGGCGGAAATTGGAAGT
ACCTGCTGGAAATGCTGAAATTGAAATCCGGGGACAACGTGTTATATGTG
GGAGATCACATGTATAGGTCGGTGGCGAGGGAGGAAATGAGTGATATAGT
AGGAAGGCTGTATATGTCGAGTAATCCATTTTTTCCGATGTTCTTATACT
TATCTTCCCTCCGTCTCTTCGTACCTTTATCCCTCGCTATCTCCTTCTCC
AGTGATATTTTGAGAAGTAAACGTAGCCTGGGGTGGAGAACATGCTTAGT
GATTCCCGAGCTAGCGGAGGAGGTTGCTTCTTTGCAGCGGTATGCCGACA
TGGACGCTGGCTTGCAAGAATTAAGGAGGTGAGAGAGGGGGAAAGAGAGG
GACGAAGTGTATGGGGAAGGGAATGTGAAAGGGAAAGTCGAAGACTGCAT
TTTCTTTGCACACCTTTAGGAGTGCTTCATGCTTACCTCTTCCCGTCCCC
TTTCCTTTATCAAAATTCTTTCTTCGACGCAAGACGGCGGCTATCAATGG
ACGAGGAAATCGACGCTATTTACAAGGCCATCCGCGCCCATCGTGTTAAA
GGCGATGCTGAAAGCGGGCAAGAAAAAATGAAGACTGAGCCCTCACCGGA
GCTCAAAAAGCTGAATAGACAACTGCAAGACTTGGAAGAGGGTGGGGAAA
GGTTGGATGAGACAATCAAAACGGCCTGCTTGGCTTATCATTATAAATTT
CACCCGGTCTGGGGGAAGCTATTTGAAGCAGGTTTTCAGGAGAGTCGGTT
TGCCAAGCAGGTATCGACGTATGCCTGTATTTATACGACGAAGGCGTCAA
ATCTTGGGATGGTTAGCCCCGAGAGATGGTTTAGAACGGTGCGGGATAGC
TTGCCGCACGATGTTTATCTTGCTTTGGGCTTGGGAGGGAAAAGGTAGGG
GGAAATATTTGTTTCCCCAATAGATGTACAAAAAGCAATCACTATACCGG
CATCAT back to topCoding sequence (CDS) from alignment at chr13:584785..587390+ >NO13G02070.2 ID=NO13G02070.2|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr13:584785..587390+ (Nannochloropsis oceanica) ATGGTGTCCCTTCACCGGAGGTCACAGCAAAAGGTCATGGTGCTACTGGT GCTGCTGCTGGTGGTCGTGCTGCCGGTATTGGACGCTTTTCTTGCTCCGT GCAGCGCCCTCGCAGGGAGGTCAATGCCCTCCTCCTCCTCGACCCACAGC CGCCCCGCGGCAAACCTGCGTATGACAACCAACATCCCGACAACCAGTCA CACTCCATTATTAGACGGGGAAATCGAGGTATTTTGCAACCGGGAGATCA ACATGCAGCAGATTCGGGCCATTGGCTTTGACATGGACTACACCCTTGCG CAATACAACCTGGCATTTGAGCTCCTCGCCTACGACGGAGCCAAACAAAA GCTTGTAGACACCCTGGGGTACCCTTCCGCGGTCGCCGATTTCGAGTATG ACTCAACCTACTTCCGGAGAGGGCTGGTCATTGACAAGGAGCGAGGCAAC GTCATAAAGATGGACCGACACAAGTACGTCCGACAAGCCTACCACGGCTT TTCTCCCCTCGCGCCCGCAGTCCGAAAAGAGCTCTACATGGCCAGTTCGG AGCATATTCCGCTGTACACTGAGAGTACATTTGTCAACATTGACACTCTC TTCTTGCTGGTCGACGCCTACCTCTTCGCGCAGCTCGTGGAGTACAAAGA CAGACAGCCCTCCCAGATCAAGCATTCCTATGCTACCATGTACGCGCACA TCCGTCAATGCGTCGACTTGTGCCATCGCGACGGCGTGATCAAAGACCGT GTGGCTGAGAATCCGGGAGATTACATTATTCCTGACCCTGGGATGGTAAC GATGCTGGAGCAATATAAGGAGAGTGGGCGGAAGACGTTTTTGGTCACGA ATAGCTTGTGGGAGTACACGGACGTGGTCATGAACTTCCTCGTGGGAAAT CACGGCCCGCGCAACCAGGACTGGCTCGATCTGTTCGAAGTCGTCATTGT CGGTAGCCGGAAGCCGGCCTTCCTTGAGGATAGATCCGCGTATATGATGC GTGTCGCCTCTGCTGATGGCTCTTTGCGGAACGTGGACGGGGTAGAAGAA CCCGTGGATGAATTTCTTGCGGCAGGCAAGGTGTTTCAGGGCGGAAATTG GAAGTACCTGCTGGAAATGCTGAAATTGAAATCCGGGGACAACGTGTTAT ATGTGGGAGATCACATGTATAGGTCGGTGGCGAGGGAGGAAATGAGTGAT ATAGTAGGAAGGCTGTATATGTCGAGTAATCCATTTTTTCCGATGTTCTT ATACTTATCTTCCCTCCGTCTCTTCGTACCTTTATCCCTCGCTATCTCCT TCTCCAGTGATATTTTGAGAAGTAAACGTAGCCTGGGGTGGAGAACATGC TTAGTGATTCCCGAGCTAGCGGAGGAGGTTGCTTCTTTGCAGCGGTATGC CGACATGGACGCTGGCTTGCAAGAATTAAGGAGGTGA back to top
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