NO13G02070.2, NO13G02070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02070.2
Unique NameNO13G02070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2500
Alignment locationchr13:584785..587390 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:584785..587390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02070.2 vs.
Match: XP_005855658.1 (hypothetical protein NGA_0623000 [Nannochloropsis gaditana CCMP526]; EKU20706.1 hypothetical protein NGA_0623000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 623.6 bits (1607), Expect = 5.000e-175
Identity = 314/387 (81.14%), Postives = 332/387 (85.79%), Query Frame = 0
Query:   15 LLVLLLVVVLPVLDAFLAPCSA--LAGRSMPSSSSTHSRPAANLRMTTNIPTTSHTPLLDGEIEVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDTLGYPSAVADFEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPLAPAVRKELYMASSEHIPLYTESTFVNIDTLFLLVDAYLFAQLVEYKDRQPSQIKHSYATMYAHIRQCVDLCHRDGVIKDRVAENPGDYIIPDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGNHGPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVASADGSLRNVDGVEEPVDEFLAAGKVFQGGNWKYLLEMLKLKSGDNVLYVGDHMYRSVAREEMS 400
            L+++L  +    + AF APC A  L GR      S  +    ++RM+   P      LLDGE EVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDT  YP AVA FEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPL  AVRK LYMASSE+IPLYTESTFVNIDTLFLLVDAYLFAQLVEYKDR PS+IKHSYA +Y+HIRQCVDLCHRDGVIKDRVAE+PG YI+PDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGN GPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVA ADGSLRNVDGVE PVD FLA GKVFQGGNWK+LLEMLKL SGDNVLYVGDHMY  + R + S
Sbjct:   14 LVMVLSSIASLTVQAFTAPCRASQLLGRRSVQLPSPPTFSVGSIRMSAGSPPRDDKYLLDGETEVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDTFRYPEAVASFEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPLPSAVRKSLYMASSENIPLYTESTFVNIDTLFLLVDAYLFAQLVEYKDRHPSEIKHSYAAIYSHIRQCVDLCHRDGVIKDRVAEDPGAYIVPDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGNKGPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVAPADGSLRNVDGVEGPVDAFLAQGKVFQGGNWKHLLEMLKLTSGDNVLYVGDHMYSDILRSKRS 400          
The following BLAST results are available for this feature:
BLAST of NO13G02070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855658.15.000e-17581.14hypothetical protein NGA_0623000 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02070NO13G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02070.2NO13G02070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02070.2.cds1NO13G02070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02070.2.cds2NO13G02070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02070.2 ID=NO13G02070.2|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2500bp
GGCGCCCTTTCCAGCGATGGGAAGATCGGGCACTCCTTTTTTCATTTCTT
TGGAGCGCGTGCACTCGTGTCCTCTGGGCGAGGGCTTTTTATGGCGCATC
GAGGCGGGCACTGTACCGTGCAGAGCATCACATCCCATGGACATGGCGCT
CAGGTCTCCTGCACTTGGATATGTTTCGGGGCTCTGTCCCCGTGCTCGGT
CGTTCGGGTACTTTCCGCTTGCCTTTATTATAACACGACTCGTCACTAGA
CTTCACAAAGTGGATGGCTTTGAGTGTACATAACTAGGAAGTACCGGTGG
TGGTGGTGGTAGCTTTCTTGCTCTCTATAGCCCGCCTCGATTATTTTCAT
CATCGCTTATCGCACCTAAGCCTTCCCCACCCCTTCCTTTCTTTCCTTTC
ACAGAGCGAGTCCCATCACGCACGGCGTTAACAAGGGCGATGGTGTCCCT
TCACCGGAGGTCACAGCAAAAGGTCATGGTGCTACTGGTGCTGCTGCTGG
TGGTCGTGCTGCCGGTATTGGACGCTTTTCTTGCTCCGTGCAGCGCCCTC
GCAGGGAGGTCAATGCCCTCCTCCTCCTCGACCCACAGCCGCCCCGCGGC
AAACCTGCGTATGACAACCAACATCCCGACAACCAGTCACACTCCATTAT
TAGACGGGGAAATCGAGGTATTTTGCAACCGGGAGATCAACATGCAGCAG
ATTCGGGCCATTGGCTTTGACATGGACTACACCCTTGCGCAATACAACCT
GGCATTTGAGCTCCTCGCCTACGACGGAGCCAAACAAAAGCTTGTAGACA
CCCTGGGGTACCCTTCCGCGGTCGCCGATTTCGAGTATGACTCAACCTAC
TTCCGGAGAGGGCTGGTCATTGACAAGGAGCGAGGCAACGTCATAAAGAT
GGACCGACACAAGTACGTCCGACAAGCCTACCACGGCTTTTCTCCCCTCG
CGCCCGCAGTCCGAAAAGAGCTCTACATGGCCAGTTCGGAGCATATTCCG
CTGTACACTGAGAGTACATTTGTCAACATTGACACTCTCTTCTTGCTGGT
CGACGCCTACCTCTTCGCGCAGCTCGTGGAGTACAAAGACAGACAGCCCT
CCCAGATCAAGCATTCCTATGCTACCATGTACGCGCACATCCGTCAATGC
GTCGACTTGTGCCATCGCGACGGCGTGATCAAAGACCGTGTGGCTGAGAA
TCCGGGAGATTACATTATTCCTGACCCTGGGATGGTAACGATGCTGGAGC
AATATAAGGAGAGTGGGCGGAAGACGTTTTTGGTCACGAATAGCTTGTGG
GAGTACACGGACGTGGTCATGAACTTCCTCGTGGGAAATCACGGCCCGCG
CAACCAGGACTGGCTCGATCTGTTCGAAGTCGTCATTGTCGGTAGCCGGA
AGCCGGCCTTCCTTGAGGATAGATCCGCGTATATGATGCGTGTCGCCTCT
GCTGATGGCTCTTTGCGGAACGTGGACGGGGTAGAAGAACCCGTGGATGA
ATTTCTTGCGGCAGGCAAGGTGTTTCAGGGCGGAAATTGGAAGTACCTGC
TGGAAATGCTGAAATTGAAATCCGGGGACAACGTGTTATATGTGGGAGAT
CACATGTATAGGTCGGTGGCGAGGGAGGAAATGAGTGATATAGTAGGAAG
GCTGTATATGTCGAGTAATCCATTTTTTCCGATGTTCTTATACTTATCTT
CCCTCCGTCTCTTCGTACCTTTATCCCTCGCTATCTCCTTCTCCAGTGAT
ATTTTGAGAAGTAAACGTAGCCTGGGGTGGAGAACATGCTTAGTGATTCC
CGAGCTAGCGGAGGAGGTTGCTTCTTTGCAGCGGTATGCCGACATGGACG
CTGGCTTGCAAGAATTAAGGAGGTGAGAGAGGGGGAAAGAGAGGGACGAA
GTGTATGGGGAAGGGAATGTGAAAGGGAAAGTCGAAGACTGCATTTTCTT
TGCACACCTTTAGGAGTGCTTCATGCTTACCTCTTCCCGTCCCCTTTCCT
TTATCAAAATTCTTTCTTCGACGCAAGACGGCGGCTATCAATGGACGAGG
AAATCGACGCTATTTACAAGGCCATCCGCGCCCATCGTGTTAAAGGCGAT
GCTGAAAGCGGGCAAGAAAAAATGAAGACTGAGCCCTCACCGGAGCTCAA
AAAGCTGAATAGACAACTGCAAGACTTGGAAGAGGGTGGGGAAAGGTTGG
ATGAGACAATCAAAACGGCCTGCTTGGCTTATCATTATAAATTTCACCCG
GTCTGGGGGAAGCTATTTGAAGCAGGTTTTCAGGAGAGTCGGTTTGCCAA
GCAGGTATCGACGTATGCCTGTATTTATACGACGAAGGCGTCAAATCTTG
GGATGGTTAGCCCCGAGAGATGGTTTAGAACGGTGCGGGATAGCTTGCCG
CACGATGTTTATCTTGCTTTGGGCTTGGGAGGGAAAAGGTAGGGGGAAAT
ATTTGTTTCCCCAATAGATGTACAAAAAGCAATCACTATACCGGCATCAT
back to top

protein sequence of NO13G02070.2

>NO13G02070.2-protein ID=NO13G02070.2-protein|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MVSLHRRSQQKVMVLLVLLLVVVLPVLDAFLAPCSALAGRSMPSSSSTHS
RPAANLRMTTNIPTTSHTPLLDGEIEVFCNREINMQQIRAIGFDMDYTLA
QYNLAFELLAYDGAKQKLVDTLGYPSAVADFEYDSTYFRRGLVIDKERGN
VIKMDRHKYVRQAYHGFSPLAPAVRKELYMASSEHIPLYTESTFVNIDTL
FLLVDAYLFAQLVEYKDRQPSQIKHSYATMYAHIRQCVDLCHRDGVIKDR
VAENPGDYIIPDPGMVTMLEQYKESGRKTFLVTNSLWEYTDVVMNFLVGN
HGPRNQDWLDLFEVVIVGSRKPAFLEDRSAYMMRVASADGSLRNVDGVEE
PVDEFLAAGKVFQGGNWKYLLEMLKLKSGDNVLYVGDHMYRSVAREEMSD
IVGRLYMSSNPFFPMFLYLSSLRLFVPLSLAISFSSDILRSKRSLGWRTC
LVIPELAEEVASLQRYADMDAGLQELRR*
back to top

mRNA from alignment at chr13:584785..587390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02070.2 ID=NO13G02070.2|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp|location=Sequence derived from alignment at chr13:584785..587390+ (Nannochloropsis oceanica)
GGCGCCCTTTCCAGCGATGGGAAGATCGGGCACTCCTTTTTTCATTTCTT TGGAGCGCGTGCACTCGTGTCCTCTGGGCGAGGGCTTTTTATGGCGCATC GAGGCGGGCACTGTACCGTGCAGAGCATCACATCCCATGGACATGGCGCT CAGGTCTCCTGCACTTGGATATGTTTCGGGGCTCTGTCCCCGTGCTCGGT CGTTCGGGTACTTTCCGCTTGCCTTTATTATAACACGACTCGTCACTAGA CTTCACAAAGTGGATGGCTTTGAGTGTACATAACTAGGAAGTACCGGTGG TGGTGGTGGTAGCTTTCTTGCTCTCTATAGCCCGCCTCGATTATTTTCAT CATCGCTTATCGCACCTAAGCCTTCCCCACCCCTTCCTTTCTTTCCTTTC ACAGAGCGAGTCCCATCACGCACGGCGTTAACAAGGGCGATGGTGTCCCT TCACCGGAGGTCACAGCAAAAGGTCATGGTGCTACTGGTGCTGCTGCTGG TGGTCGTGCTGCCGGTATTGGACGCTTTTCTTGCTCCGTGCAGCGCCCTC GCAGGGAGGTCAATGCCCTCCTCCTCCTCGACCCACAGCCGCCCCGCGGC AAACCTGCGTATGACAACCAACATCCCGACAACCAGTCACACTCCATTAT TAGACGGGGAAATCGAGGTATTTTGCAACCGGGAGATCAACATGCAGCAG ATTCGGGCCATTGGCTTTGACATGGACTACACCCTTGCGCAATACAACCT GGCATTTGAGCTCCTCGCCTACGACGGAGCCAAACAAAAGCTTGTAGACA CCCTGGGGTACCCTTCCGCGGTCGCCGATTTCGAGTATGACTCAACCTAC TTCCGGAGAGGGCTGGTCATTGACAAGGAGCGAGGCAACGTCATAAAGAT GGACCGACACAAGTACGTCCGACAAGCCTACCACGGCTTTTCTCCCCTCG CGCCCGCAGTCCGAAAAGAGCTCTACATGGCCAGTTCGGAGCATATTCCG CTGTACACTGAGAGTACATTTGTCAACATTGACACTCTCTTCTTGCTGGT CGACGCCTACCTCTTCGCGCAGCTCGTGGAGTACAAAGACAGACAGCCCT CCCAGATCAAGCATTCCTATGCTACCATGTACGCGCACATCCGTCAATGC GTCGACTTGTGCCATCGCGACGGCGTGATCAAAGACCGTGTGGCTGAGAA TCCGGGAGATTACATTATTCCTGACCCTGGGATGGTAACGATGCTGGAGC AATATAAGGAGAGTGGGCGGAAGACGTTTTTGGTCACGAATAGCTTGTGG GAGTACACGGACGTGGTACGGAAAAAAAAGGGGAGGAGATGTGTTGAGTC AAGGGGCCCTCATTTTCATGTGTTGTAAATCATTCTTCCTCTTCCCCTCC TTTTCCCTTTCTCCCCCTCAGGTCATGAACTTCCTCGTGGGAAATCACGG CCCGCGCAACCAGGACTGGCTCGATCTGTTCGAAGTCGTCATTGTCGGTA GCCGGAAGCCGGCCTTCCTTGAGGATAGATCCGCGTATATGATGCGTGTC GCCTCTGCTGATGGCTCTTTGCGGAACGTGGACGGGGTAGAAGAACCCGT GGATGAATTTCTTGCGGCAGGCAAGGTGTTTCAGGGCGGAAATTGGAAGT ACCTGCTGGAAATGCTGAAATTGAAATCCGGGGACAACGTGTTATATGTG GGAGATCACATGTATAGGTCGGTGGCGAGGGAGGAAATGAGTGATATAGT AGGAAGGCTGTATATGTCGAGTAATCCATTTTTTCCGATGTTCTTATACT TATCTTCCCTCCGTCTCTTCGTACCTTTATCCCTCGCTATCTCCTTCTCC AGTGATATTTTGAGAAGTAAACGTAGCCTGGGGTGGAGAACATGCTTAGT GATTCCCGAGCTAGCGGAGGAGGTTGCTTCTTTGCAGCGGTATGCCGACA TGGACGCTGGCTTGCAAGAATTAAGGAGGTGAGAGAGGGGGAAAGAGAGG GACGAAGTGTATGGGGAAGGGAATGTGAAAGGGAAAGTCGAAGACTGCAT TTTCTTTGCACACCTTTAGGAGTGCTTCATGCTTACCTCTTCCCGTCCCC TTTCCTTTATCAAAATTCTTTCTTCGACGCAAGACGGCGGCTATCAATGG ACGAGGAAATCGACGCTATTTACAAGGCCATCCGCGCCCATCGTGTTAAA GGCGATGCTGAAAGCGGGCAAGAAAAAATGAAGACTGAGCCCTCACCGGA GCTCAAAAAGCTGAATAGACAACTGCAAGACTTGGAAGAGGGTGGGGAAA GGTTGGATGAGACAATCAAAACGGCCTGCTTGGCTTATCATTATAAATTT CACCCGGTCTGGGGGAAGCTATTTGAAGCAGGTTTTCAGGAGAGTCGGTT TGCCAAGCAGGTATCGACGTATGCCTGTATTTATACGACGAAGGCGTCAA ATCTTGGGATGGTTAGCCCCGAGAGATGGTTTAGAACGGTGCGGGATAGC TTGCCGCACGATGTTTATCTTGCTTTGGGCTTGGGAGGGAAAAGGTAGGG GGAAATATTTGTTTCCCCAATAGATGTACAAAAAGCAATCACTATACCGG CATCAT
back to top

Coding sequence (CDS) from alignment at chr13:584785..587390+

>NO13G02070.2 ID=NO13G02070.2|Name=NO13G02070.2|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr13:584785..587390+ (Nannochloropsis oceanica)
ATGGTGTCCCTTCACCGGAGGTCACAGCAAAAGGTCATGGTGCTACTGGT
GCTGCTGCTGGTGGTCGTGCTGCCGGTATTGGACGCTTTTCTTGCTCCGT
GCAGCGCCCTCGCAGGGAGGTCAATGCCCTCCTCCTCCTCGACCCACAGC
CGCCCCGCGGCAAACCTGCGTATGACAACCAACATCCCGACAACCAGTCA
CACTCCATTATTAGACGGGGAAATCGAGGTATTTTGCAACCGGGAGATCA
ACATGCAGCAGATTCGGGCCATTGGCTTTGACATGGACTACACCCTTGCG
CAATACAACCTGGCATTTGAGCTCCTCGCCTACGACGGAGCCAAACAAAA
GCTTGTAGACACCCTGGGGTACCCTTCCGCGGTCGCCGATTTCGAGTATG
ACTCAACCTACTTCCGGAGAGGGCTGGTCATTGACAAGGAGCGAGGCAAC
GTCATAAAGATGGACCGACACAAGTACGTCCGACAAGCCTACCACGGCTT
TTCTCCCCTCGCGCCCGCAGTCCGAAAAGAGCTCTACATGGCCAGTTCGG
AGCATATTCCGCTGTACACTGAGAGTACATTTGTCAACATTGACACTCTC
TTCTTGCTGGTCGACGCCTACCTCTTCGCGCAGCTCGTGGAGTACAAAGA
CAGACAGCCCTCCCAGATCAAGCATTCCTATGCTACCATGTACGCGCACA
TCCGTCAATGCGTCGACTTGTGCCATCGCGACGGCGTGATCAAAGACCGT
GTGGCTGAGAATCCGGGAGATTACATTATTCCTGACCCTGGGATGGTAAC
GATGCTGGAGCAATATAAGGAGAGTGGGCGGAAGACGTTTTTGGTCACGA
ATAGCTTGTGGGAGTACACGGACGTGGTCATGAACTTCCTCGTGGGAAAT
CACGGCCCGCGCAACCAGGACTGGCTCGATCTGTTCGAAGTCGTCATTGT
CGGTAGCCGGAAGCCGGCCTTCCTTGAGGATAGATCCGCGTATATGATGC
GTGTCGCCTCTGCTGATGGCTCTTTGCGGAACGTGGACGGGGTAGAAGAA
CCCGTGGATGAATTTCTTGCGGCAGGCAAGGTGTTTCAGGGCGGAAATTG
GAAGTACCTGCTGGAAATGCTGAAATTGAAATCCGGGGACAACGTGTTAT
ATGTGGGAGATCACATGTATAGGTCGGTGGCGAGGGAGGAAATGAGTGAT
ATAGTAGGAAGGCTGTATATGTCGAGTAATCCATTTTTTCCGATGTTCTT
ATACTTATCTTCCCTCCGTCTCTTCGTACCTTTATCCCTCGCTATCTCCT
TCTCCAGTGATATTTTGAGAAGTAAACGTAGCCTGGGGTGGAGAACATGC
TTAGTGATTCCCGAGCTAGCGGAGGAGGTTGCTTCTTTGCAGCGGTATGC
CGACATGGACGCTGGCTTGCAAGAATTAAGGAGGTGA
back to top
Synonyms
Publications