NO13G02060.1, NO13G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02060.1
Unique NameNO13G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr13:584117..584593 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:584117..584593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02060.1 vs.
Match: EWM21871.1 (hypothetical protein Naga_100169g6 [Nannochloropsis gaditana])

HSP 1 Score: 161.0 bits (406), Expect = 3.000e-36
Identity = 82/136 (60.29%), Postives = 105/136 (77.21%), Query Frame = 0
Query:   27 TTNLLVRRPAGKCLSLAVPDSLRVGELKSQLSLTTGIAVEDQYLMYQCKLLQDSATLALYGLGG----TEGSDLTYCHLPMVDMGVRQRGGCFIVTFTILSILFFATLCAPFTCGTSLFLYLFLLPPVFVLPFFCL 159
            T NL+VR P G+C  L V   +RV +LK+Q++   G+AVE+QYL+++CK+LQD   LA Y LG     ++ +  TY  +P V++G+RQRGGCFIVTFT+L+ILFFATLCAP TCGTSL LYLFLLPPVF+LPFFCL
Sbjct:   28 TNNLIVRGPGGQCYPLNVQGDMRVQDLKAQVATAIGVAVEEQYLLHRCKILQDHEALASYDLGTQHHLSKKAMATY-QMPTVEVGIRQRGGCFIVTFTLLTILFFATLCAPLTCGTSLCLYLFLLPPVFILPFFCL 162          
The following BLAST results are available for this feature:
BLAST of NO13G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21871.13.000e-3660.29hypothetical protein Naga_100169g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02060NO13G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02060.1NO13G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02060.1.cds1NO13G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02060.1 ID=NO13G02060.1|Name=NO13G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGAGAGCGCCCAGAA
GCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACTTGCTGGTCCGAA
GGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGACAGCCTGCGAGTT
GGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTATTGCCGTAGAAGA
CCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACTCTGCAACTTTGG
CGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTTACATACTGTCAC
CTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGGATGTTTCATTGT
GACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGCTATGTGCGCCAT
TTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTTTTGCCGCCTGTA
TTTGTATTGCCTTTTTTCTGTTTGTAG
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protein sequence of NO13G02060.1

>NO13G02060.1-protein ID=NO13G02060.1-protein|Name=NO13G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MMPSTRRGEEEGESAQKQRRQQQQQQTTNLLVRRPAGKCLSLAVPDSLRV
GELKSQLSLTTGIAVEDQYLMYQCKLLQDSATLALYGLGGTEGSDLTYCH
LPMVDMGVRQRGGCFIVTFTILSILFFATLCAPFTCGTSLFLYLFLLPPV
FVLPFFCL*
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mRNA from alignment at chr13:584117..584593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02060.1 ID=NO13G02060.1|Name=NO13G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp|location=Sequence derived from alignment at chr13:584117..584593- (Nannochloropsis oceanica)
ATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGAGAGCGCCCAGAA GCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACTTGCTGGTCCGAA GGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGACAGCCTGCGAGTT GGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTATTGCCGTAGAAGA CCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACTCTGCAACTTTGG CGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTTACATACTGTCAC CTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGGATGTTTCATTGT GACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGCTATGTGCGCCAT TTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTTTTGCCGCCTGTA TTTGTATTGCCTTTTTTCTGTTTGTAG
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Coding sequence (CDS) from alignment at chr13:584117..584593-

>NO13G02060.1 ID=NO13G02060.1|Name=NO13G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr13:584117..584593- (Nannochloropsis oceanica)
ATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGAGAGCGCCCAGAA
GCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACTTGCTGGTCCGAA
GGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGACAGCCTGCGAGTT
GGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTATTGCCGTAGAAGA
CCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACTCTGCAACTTTGG
CGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTTACATACTGTCAC
CTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGGATGTTTCATTGT
GACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGCTATGTGCGCCAT
TTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTTTTGCCGCCTGTA
TTTGTATTGCCTTTTTTCTGTTTGTAG
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Synonyms
Publications