NO13G01990.1, NO13G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01990.1
Unique NameNO13G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr13:572382..573851 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:572382..573851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01990.1 vs.
Match: EWM21863.1 (gtp-binding protein obg [Nannochloropsis gaditana])

HSP 1 Score: 535.8 bits (1379), Expect = 1.400e-148
Identity = 294/482 (61.00%), Postives = 346/482 (71.78%), Query Frame = 0 
Query:    1 MDRHHFHGKPGGTGDSKNQRGARGRHTVVRVPCGTIVKEVLRRCANGCNGNYYERVQVCDLDEPLSYYTAATGGKPGLGNSIQAGRVRKTSAASGNFRAPGHQGEERYYELELKTIADVGLVGYPNAGKSTLLGGLSMAQPKVAAYPFTTLHPTVGRVEYTDAASLTVADLPGLIEGAHANKGLGHEFLRHIERTKVLLYVLDGIGGEGRGVAAGVEDGSVVEEAPAHVLRKLKEELELYCPGLSRRPSLVWLNKADLNSDWVQEAKSAVEAVLREDEVEVDARKDAGDVEGVMTRDWKVPPILWGSACTGERIGELAHELRRAVELVALEEENVRGINGPGSNCSGSGSGSDGGSRATKGSGDNGNHYRQQLRHEQQQQQLHLPQMGEIMVAVGTTEETASLQRVEED-AAYAEGMCIAHAYSKALEESQARNTEWISGIQGVSAAVIRARRYAAGLAVTYRQNYWLTDAIHSAMQVQQPK 482
            MDRHHFHGK GG+GDS  + GARG H VVRVPCGT+VKEVLR       G  YERVQVCDLD+PLSYY AATGG+PGLGNS+QAGR R +++ASGNFR+PGHQGEER+YELELKTIADVGLVGYPNAGKSTLLGGLS A+P  AAY FTTLHPTVGRVEYTDAAS+TVADLPGLIEGAHANKGLGHEFLRHIERTKVL+YVLDG+G EG    AGV+DGSVVEEAP  V RKLK+ELELYCPGLSRRPSLVWLNKADLN++WV EAK+AV A +  D+   D  +  G  E  M +  +VP +L GSA TGE IGELAHELRR V+ VA E+E  +G  G G +  G G G    +R T GS            H    +Q  +  +G       TT+   S    + D AA  + + +A AY+KALE +Q  N EW++ +Q  +  + RA+ Y+A L VTYRQ+YWL   +      +Q +
Sbjct:  312 MDRHHFHGKAGGSGDSNKKHGARGAHAVVRVPCGTVVKEVLR----SGRGGGYERVQVCDLDQPLSYYRAATGGRPGLGNSVQAGRARNSASASGNFRSPGHQGEERFYELELKTIADVGLVGYPNAGKSTLLGGLSRARPAAAAYAFTTLHPTVGRVEYTDAASVTVADLPGLIEGAHANKGLGHEFLRHIERTKVLVYVLDGVGREG---GAGVDDGSVVEEAPVTVFRKLKKELELYCPGLSRRPSLVWLNKADLNAEWVSEAKAAVMADMSGDDATADRPQAWG--ESTMGQRGRVPNVLSGSARTGEGIGELAHELRRVVDRVAQEDEKAQGYGGGGGH--GGGEGGKLWARETGGSD-----------HALPHRQGGIEGVG----GRNTTKSEGSFVTADVDSAADDKTISLAEAYAKALELTQRFNVEWMNAVQCANQNIHRAQCYSAALTVTYRQDYWLAHGMRMMKAGEQTR 767
The following BLAST results are available for this feature:
BLAST of NO13G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21863.11.400e-14861.00gtp-binding protein obg [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01990NO13G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01990.1NO13G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01990.1.cds1NO13G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01990.1 ID=NO13G01990.1|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
ATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGACGGGCGATTCCAA
GAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGCGTGTACCGTGTG
GGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAATGGGTGCAATGGC
AACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGAACCCCTCAGCTA
TTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCAACTCAATACAGG
CAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAATTTCCGCGCGCCC
GGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCTCAAGACGATTGC
CGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGTCGACGCTGCTGG
GGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTACCCTTTCACGACG
CTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGCGGCGAGTCTGAC
AGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATGCCAATAAAGGGT
TGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAAGTGTTGTTGTAT
GTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGCGGCAGGGGTGGA
GGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCTTGCGGAAATTGA
AAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGGCGTCCGTCGTTG
GTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGTGCAAGAGGCCAA
ATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGGAAGTAGATGCTC
GCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGGGATTGGAAAGTA
CCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACGCATTGGCGAGTT
AGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCACTTGAAGAGGAAA
ATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGTGGTAGTGGTAGT
GGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGGTGATAATGGTAA
TCATTATCGGCAGCAGCTGAGGCACGAGCAGCAGCAACAGCAACTACATC
TGCCGCAGATGGGTGAGATCATGGTAGCGGTAGGTACCACAGAGGAAACT
GCATCACTTCAAAGAGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTG
CATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACA
CTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCT
CGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCT
CACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCA
CCGGTGAGCCGACGAAATGA
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protein sequence of NO13G01990.1

>NO13G01990.1-protein ID=NO13G01990.1-protein|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MDRHHFHGKPGGTGDSKNQRGARGRHTVVRVPCGTIVKEVLRRCANGCNG
NYYERVQVCDLDEPLSYYTAATGGKPGLGNSIQAGRVRKTSAASGNFRAP
GHQGEERYYELELKTIADVGLVGYPNAGKSTLLGGLSMAQPKVAAYPFTT
LHPTVGRVEYTDAASLTVADLPGLIEGAHANKGLGHEFLRHIERTKVLLY
VLDGIGGEGRGVAAGVEDGSVVEEAPAHVLRKLKEELELYCPGLSRRPSL
VWLNKADLNSDWVQEAKSAVEAVLREDEVEVDARKDAGDVEGVMTRDWKV
PPILWGSACTGERIGELAHELRRAVELVALEEENVRGINGPGSNCSGSGS
GSDGGSRATKGSGDNGNHYRQQLRHEQQQQQLHLPQMGEIMVAVGTTEET
ASLQRVEEDAAYAEGMCIAHAYSKALEESQARNTEWISGIQGVSAAVIRA
RRYAAGLAVTYRQNYWLTDAIHSAMQVQQPKGGTGEPTK*
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mRNA from alignment at chr13:572382..573851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01990.1 ID=NO13G01990.1|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr13:572382..573851- (Nannochloropsis oceanica)
ATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGACGGGCGATTCCAA
GAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGCGTGTACCGTGTG
GGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAATGGGTGCAATGGC
AACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGAACCCCTCAGCTA
TTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCAACTCAATACAGG
CAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAATTTCCGCGCGCCC
GGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCTCAAGACGATTGC
CGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGTCGACGCTGCTGG
GGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTACCCTTTCACGACG
CTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGCGGCGAGTCTGAC
AGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATGCCAATAAAGGGT
TGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAAGTGTTGTTGTAT
GTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGCGGCAGGGGTGGA
GGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCTTGCGGAAATTGA
AAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGGCGTCCGTCGTTG
GTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGTGCAAGAGGCCAA
ATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGGAAGTAGATGCTC
GCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGGGATTGGAAAGTA
CCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACGCATTGGCGAGTT
AGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCACTTGAAGAGGAAA
ATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGTGGTAGTGGTAGT
GGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGGTGATAATGGTAA
TCATTATCGGCAGCAGCTGAGGCACGAGCAGCAGCAACAGCAACTACATC
TGCCGCAGATGGGTGAGATCATGGTAGCGGTAGGTACCACAGAGGAAACT
GCATCACTTCAAAGAGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTG
CATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACA
CTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCT
CGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCT
CACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCA
CCGGTGAGCCGACGAAATGA
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Coding sequence (CDS) from alignment at chr13:572382..573851-

>NO13G01990.1 ID=NO13G01990.1|Name=NO13G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr13:572382..573851- (Nannochloropsis oceanica)
ATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGACGGGCGATTCCAA
GAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGCGTGTACCGTGTG
GGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAATGGGTGCAATGGC
AACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGAACCCCTCAGCTA
TTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCAACTCAATACAGG
CAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAATTTCCGCGCGCCC
GGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCTCAAGACGATTGC
CGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGTCGACGCTGCTGG
GGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTACCCTTTCACGACG
CTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGCGGCGAGTCTGAC
AGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATGCCAATAAAGGGT
TGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAAGTGTTGTTGTAT
GTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGCGGCAGGGGTGGA
GGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCTTGCGGAAATTGA
AAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGGCGTCCGTCGTTG
GTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGTGCAAGAGGCCAA
ATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGGAAGTAGATGCTC
GCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGGGATTGGAAAGTA
CCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACGCATTGGCGAGTT
AGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCACTTGAAGAGGAAA
ATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGTGGTAGTGGTAGT
GGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGGTGATAATGGTAA
TCATTATCGGCAGCAGCTGAGGCACGAGCAGCAGCAACAGCAACTACATC
TGCCGCAGATGGGTGAGATCATGGTAGCGGTAGGTACCACAGAGGAAACT
GCATCACTTCAAAGAGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTG
CATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACA
CTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCT
CGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCT
CACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCA
CCGGTGAGCCGACGAAATGA
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Synonyms
Publications