NO13G01980.1, NO13G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01980.1
Unique NameNO13G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length774
Alignment locationchr13:568721..569614 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:568721..569614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01980.1 vs.
Match: EWM21858.1 (hypothetical protein Naga_100169g12 [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 3.000e-94
Identity = 177/246 (71.95%), Postives = 204/246 (82.93%), Query Frame = 0 
Query:   13 DSDDGISSSSSEVRHRTVGEVEVQVYRKVLPRAAINLLMKGEQPLAKNTNSSISSRSMSSSIRTARNPWPGVNYLIQTLFESEHATQVKHPYIAEISSRCDSGGPPQRLDLRLTSSGVQCLLTPTAILGVEAIIFSLKEALQFAGKVQWDTHLVLVLPGAPEQKFHVDSSRSWFYFTLIFPLSKDPPKAGKTEFWDK-KDQPVVPVERGDVLVFDGRRKHRGSANATSRHVRVFLYIAVYSGTDWN 258
            D D  +  S S  RHRT GEVEVQV+R+VL R  ++LL+KGE     ++ + ISSR  S     ARNPWPGVN LI+TL ES HATQVKHPYIAEISSRCDS GPPQRLDLRL+SSGV+ LL+  AI  VEAI+F L+ AL+F GKV WD+H+V+VLPGAPEQ++HVDSSRSWFYFTLIFPLSKDPP+AG+TEFW+K +DQP +PVERGDVLVFDG+RKHRGSANAT RHVRVFLYIAVYSGTDWN
Sbjct:  130 DEDKRVVCSGSLKRHRTTGEVEVQVFRRVLSRDTVDLLLKGE---LFSSAAPISSRRAS---HCARNPWPGVNNLIKTLLESTHATQVKHPYIAEISSRCDSTGPPQRLDLRLSSSGVRSLLSDEAIQAVEAIVFGLRSALKFTGKVHWDSHIVVVLPGAPEQRYHVDSSRSWFYFTLIFPLSKDPPRAGRTEFWNKERDQPSMPVERGDVLVFDGKRKHRGSANATHRHVRVFLYIAVYSGTDWN 369
The following BLAST results are available for this feature:
BLAST of NO13G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21858.13.000e-9471.95hypothetical protein Naga_100169g12 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01980NO13G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01980.1NO13G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01980.1.cds1NO13G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01980.1.cds2NO13G01980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01980.1 ID=NO13G01980.1|Name=NO13G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ATGAGGCACAAGATCGCCGCTTGCAGTGAGGACACAGACTCCGATGATGG
AATCAGCAGCAGCAGCAGCGAGGTCCGGCATCGCACAGTGGGCGAGGTGG
AAGTGCAAGTATACCGAAAAGTCCTGCCCCGCGCGGCCATCAACTTGCTC
ATGAAAGGCGAACAACCCTTGGCAAAGAACACGAATAGCAGCATCAGCAG
CCGAAGCATGAGCAGCAGCATCCGTACTGCGCGAAACCCTTGGCCCGGGG
TCAACTATCTCATTCAAACGCTTTTTGAGTCCGAACATGCCACCCAAGTC
AAGCATCCTTACATCGCTGAAATCTCCTCTCGGTGCGACAGCGGAGGCCC
TCCCCAACGTCTCGATCTCCGCCTTACCTCTTCAGGGGTCCAATGCCTTT
TGACGCCCACAGCTATTCTAGGAGTGGAAGCCATTATTTTCAGCCTGAAG
GAAGCCCTCCAATTTGCCGGGAAAGTGCAATGGGATACGCACCTTGTCCT
CGTCTTGCCCGGAGCACCGGAACAGAAATTTCACGTCGACTCGTCGCGGT
CGTGGTTTTATTTTACTCTTATTTTCCCCTTGTCCAAAGATCCACCAAAG
GCAGGGAAGACGGAATTTTGGGACAAGAAGGACCAGCCGGTGGTGCCGGT
GGAAAGAGGAGACGTGCTTGTCTTTGATGGGCGGAGGAAGCATAGGGGAT
CTGCTAATGCGACGTCGAGGCATGTGAGGGTATTTTTGTATATTGCTGTG
TATTCTGGGACTGATTGGAATTAG
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protein sequence of NO13G01980.1

>NO13G01980.1-protein ID=NO13G01980.1-protein|Name=NO13G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MRHKIAACSEDTDSDDGISSSSSEVRHRTVGEVEVQVYRKVLPRAAINLL
MKGEQPLAKNTNSSISSRSMSSSIRTARNPWPGVNYLIQTLFESEHATQV
KHPYIAEISSRCDSGGPPQRLDLRLTSSGVQCLLTPTAILGVEAIIFSLK
EALQFAGKVQWDTHLVLVLPGAPEQKFHVDSSRSWFYFTLIFPLSKDPPK
AGKTEFWDKKDQPVVPVERGDVLVFDGRRKHRGSANATSRHVRVFLYIAV
YSGTDWN*
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mRNA from alignment at chr13:568721..569614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01980.1 ID=NO13G01980.1|Name=NO13G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at chr13:568721..569614- (Nannochloropsis oceanica)
ATGAGGCACAAGATCGCCGCTTGCAGTGAGGACACAGACTCCGATGATGG
AATCAGCAGCAGCAGCAGCGAGGTCCGGCATCGCACAGTGGGCGAGGTGG
AAGTGCAAGTATACCGAAAAGTCCTGCCCCGCGCGGCCATCAACTTGCTC
ATGAAAGGCGAACAACCCTTGGCAAAGAACACGAATAGCAGCATCAGCAG
GTGTGTCTTGGAAGGATAGACGTGGAGTGAACGCGACGAATGACGGGGAA
AAGAACGAGAGGCAGAGTTGATAGAAATCCCATCGTACTCACAACTTACC
ACCCATATCTTCTTTCACAGCCGAAGCATGAGCAGCAGCATCCGTACTGC
GCGAAACCCTTGGCCCGGGGTCAACTATCTCATTCAAACGCTTTTTGAGT
CCGAACATGCCACCCAAGTCAAGCATCCTTACATCGCTGAAATCTCCTCT
CGGTGCGACAGCGGAGGCCCTCCCCAACGTCTCGATCTCCGCCTTACCTC
TTCAGGGGTCCAATGCCTTTTGACGCCCACAGCTATTCTAGGAGTGGAAG
CCATTATTTTCAGCCTGAAGGAAGCCCTCCAATTTGCCGGGAAAGTGCAA
TGGGATACGCACCTTGTCCTCGTCTTGCCCGGAGCACCGGAACAGAAATT
TCACGTCGACTCGTCGCGGTCGTGGTTTTATTTTACTCTTATTTTCCCCT
TGTCCAAAGATCCACCAAAGGCAGGGAAGACGGAATTTTGGGACAAGAAG
GACCAGCCGGTGGTGCCGGTGGAAAGAGGAGACGTGCTTGTCTTTGATGG
GCGGAGGAAGCATAGGGGATCTGCTAATGCGACGTCGAGGCATGTGAGGG
TATTTTTGTATATTGCTGTGTATTCTGGGACTGATTGGAATTAG
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Coding sequence (CDS) from alignment at chr13:568721..569614-

>NO13G01980.1 ID=NO13G01980.1|Name=NO13G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr13:568721..569614- (Nannochloropsis oceanica)
ATGAGGCACAAGATCGCCGCTTGCAGTGAGGACACAGACTCCGATGATGG
AATCAGCAGCAGCAGCAGCGAGGTCCGGCATCGCACAGTGGGCGAGGTGG
AAGTGCAAGTATACCGAAAAGTCCTGCCCCGCGCGGCCATCAACTTGCTC
ATGAAAGGCGAACAACCCTTGGCAAAGAACACGAATAGCAGCATCAGCAG
CCGAAGCATGAGCAGCAGCATCCGTACTGCGCGAAACCCTTGGCCCGGGG
TCAACTATCTCATTCAAACGCTTTTTGAGTCCGAACATGCCACCCAAGTC
AAGCATCCTTACATCGCTGAAATCTCCTCTCGGTGCGACAGCGGAGGCCC
TCCCCAACGTCTCGATCTCCGCCTTACCTCTTCAGGGGTCCAATGCCTTT
TGACGCCCACAGCTATTCTAGGAGTGGAAGCCATTATTTTCAGCCTGAAG
GAAGCCCTCCAATTTGCCGGGAAAGTGCAATGGGATACGCACCTTGTCCT
CGTCTTGCCCGGAGCACCGGAACAGAAATTTCACGTCGACTCGTCGCGGT
CGTGGTTTTATTTTACTCTTATTTTCCCCTTGTCCAAAGATCCACCAAAG
GCAGGGAAGACGGAATTTTGGGACAAGAAGGACCAGCCGGTGGTGCCGGT
GGAAAGAGGAGACGTGCTTGTCTTTGATGGGCGGAGGAAGCATAGGGGAT
CTGCTAATGCGACGTCGAGGCATGTGAGGGTATTTTTGTATATTGCTGTG
TATTCTGGGACTGATTGGAATTAG
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Synonyms
Publications