NO13G01830.1, NO13G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01830.1
Unique NameNO13G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1113
Alignment locationchr13:536062..537951 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:536062..537951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01830.1 vs.
Match: EWM21824.1 (superoxide dismutase [Nannochloropsis gaditana])

HSP 1 Score: 430.6 bits (1106), Expect = 3.100e-117
Identity = 207/235 (88.09%), Postives = 218/235 (92.77%), Query Frame = 0 
Query:    1 MKTYCVVLGAASLAVASHAFLMGNPLKAAPKAAACSSTTCMAVTLPALPYADTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCLKPNGGGVPTGKIAALIDRDLGGYEAFRKQFAADSNGNFGSGWTWLAMKGDKLQIVKTSNADVPITDGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNSNLA 236
            MKTYC V GA SLAVASHAF++G+PL    KA A SST  MAV LP LP+ DTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNC+KPNGGG PTGK+AALIDRDLGG+EAFRKQFAADSNGNFGSGWTWLAM GDKL+IVKTSNAD+P+T GMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVN+NLA
Sbjct:    1 MKTYCAVFGAVSLAVASHAFMVGSPLTGVSKAPASSSTVRMAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
The following BLAST results are available for this feature:
BLAST of NO13G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21824.13.100e-11788.09superoxide dismutase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01830NO13G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01830.1NO13G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01830.1.cds1NO13G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01830.1.cds2NO13G01830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01830.1.cds3NO13G01830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01830.1.cds4NO13G01830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01830.1.cds5NO13G01830.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01830.1 ID=NO13G01830.1|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
ACACACAGCAATCTATCTATCAACATCATGAAGACCTACTGCGTCGTCCT
CGGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACC
CCTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATG
GCCGTCACCCTGCCGGCCCTTCCCTACGCCGACACCGCCCTGGAACCCTT
GATCTCCAAGAGGACCTTGGACATCCACCATGGGAAGCACCACGCCAAGT
ACGTGACGGTGACGAACGAGATGATCAAGGGCACCGACCTCGAGAATGCC
TCGTTGGAGGAGATCGTTAAGGCGGCTAAGGGCAAGAACCAGGGTCTGTT
CAACAACGCCGCGCAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCA
AGCCCAATGGTGGGGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGAT
CGGGACTTGGGGGGTTACGAGGCTTTCAGGAAGCAGTTCGCGGCAGACTC
GAACGGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACA
AGCTTCAGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGACGGG
ATGACGCCCCTGCTGGTGATTGATGTGTGGGAGCACGCGTATTACCTGGA
CGTGCAGAACGTGCGCGCGCAGTACGTGGACAACTTTCTCGATAAGCTCG
TCAACTGGGACTTCGTCAATTCCAACCTTGCCTAAATCAAGAGGATGGTG
ACTCGCTAGTCCCGTCTCTTCTCTCGCTTCTTCTACGGAAGGAGGAGGGA
GTATGAGGAAGGAGGACGAAGACCCGAATGACTCTTGAAGACACAAGGAA
TGGAGGAGGGAAGGAGGAAATGCATCTGAGGGAGCTGATGTTTCTCATAA
AATGTGTGGCGGCATGAAGAAGAATATGTATTTGCCCCCCCTTTGTGCGT
GCCGGAATGACTGAAGGACTTTTTTGGGAATGTTACAGACTAAAGCGATT
CTGGAGTGAGACTAGGGTGAAAGTTAGGCTTAAGGCATTGAGATGTAACG
GGCAAAGCGGTGGATGACGGACAAAAAGAGAAATGAGAAAGAGATGCCTC
GAGCATTTAGTAG
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protein sequence of NO13G01830.1

>NO13G01830.1-protein ID=NO13G01830.1-protein|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MKTYCVVLGAASLAVASHAFLMGNPLKAAPKAAACSSTTCMAVTLPALPY
ADTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAA
KGKNQGLFNNAAQVWNHNFYWNCLKPNGGGVPTGKIAALIDRDLGGYEAF
RKQFAADSNGNFGSGWTWLAMKGDKLQIVKTSNADVPITDGMTPLLVIDV
WEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNSNLA*
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mRNA from alignment at chr13:536062..537951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01830.1 ID=NO13G01830.1|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at chr13:536062..537951+ (Nannochloropsis oceanica)
ACACACAGCAATCTATCTATCAACATCATGAAGACCTACTGCGTCGTCCT
CGGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACC
CCTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATG
GCCGTCACCCTGCCGGCCCTTCCCTGTGAGTGCAACCTTGTTACTGCTGA
CAGGGATTATTACAGAGCATGTCCTCGTACTTATTCTGGAACAAAAGCGT
GATTCAGTGATCCGTCCCGATCTCTAATTAGATGATCAGGCTTATCTCCA
GCTCATATATTTTAATCATGTGACACAGATACCTCATGTTCCCCCTTGCC
CTCCCGACCTTCCCTTTCTCGACCTTCCCTCCCCTTCCTCTAGACGCCGA
CACCGCCCTGGAACCCTTGATCTCCAAGAGGACCTTGGACATCCACCATG
GGAAGCACCACGCCAAGTACGTGACGGTGACGAACGAGATGATCAAGGGC
ACCGACCTCGAGAATGCCTCGTTGGAGGAGATCGTTAAGGCGGCTAAGGG
TGAGTTGAAAGGAGGTGGGAGTTAAACGGAAGGAGGGAGCAAGAGCTCAG
ACGGAATGCTTATGGAGAAGCAAAAGAGGGCATAAAATAGTTGATTTCCT
CAGTGATGATACAATTTCCTCTCAGCGTACGACAAAAAATTTCTCGCCCC
CGTATTATTTCCTCGTAGGCAAGAACCAGGGTCTGTTCAACAACGCCGCG
CAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGG
GGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGG
GTTACGAGGCTTTCAGGTAAGATATGCAAACACAGAGTGGGATAGTGAAT
GAACGATAGCCTCTCGGTTGTTCTTCATTCGGGTTGCCTTCTTGCCTTTA
TGTTGCCGTCATCCACCGTCGACAAGAGATAATGAAGGTGAATGGATGAT
AAGCTCGTCTTCCTTTGTGCCTTCCTTCTTCCACCCCACATCCCTGGACA
AAACCGCAAAAAAAGAATGAAGCAACGTGAATTCTCACAAAATCGACACA
CCCATACATTGCATAACTAACTTGCAGGAAGCAGTTCGCGGCAGACTCGA
ACGGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACAAG
CTTCAGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGACGGGAT
GGTGAGTGCTTGGGAAGGGCAAGTGGAAAAAATATATCATAATTCGCTAA
ACTGCTGACGATTGAAGTTCTCGTAAATTACCATATATTCATTCTTGTTT
TTCCCCTCTCCTCCCTCCCTCCCGCCTAAGACGCCCCTGCTGGTGATTGA
TGTGTGGGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGT
ACGTGGACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCC
AACCTTGCCTAAATCAAGAGGATGGTGACTCGCTAGTCCCGTCTCTTCTC
TCGCTTCTTCTACGGAAGGAGGAGGGAGTATGAGGAAGGAGGACGAAGAC
CCGAATGACTCTTGAAGACACAAGGAATGGAGGAGGGAAGGAGGAAATGC
ATCTGAGGGAGCTGATGTTTCTCATAAAATGTGTGGCGGCATGAAGAAGA
ATATGTATTTGCCCCCCCTTTGTGCGTGCCGGAATGACTGAAGGACTTTT
TTGGGAATGTTACAGACTAAAGCGATTCTGGAGTGAGACTAGGGTGAAAG
TTAGGCTTAAGGCATTGAGATGTAACGGGCAAAGCGGTGGATGACGGACA
AAAAGAGAAATGAGAAAGAGATGCCTCGAGCATTTAGTAG
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Coding sequence (CDS) from alignment at chr13:536062..537951+

>NO13G01830.1 ID=NO13G01830.1|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr13:536062..537951+ (Nannochloropsis oceanica)
ATGAAGACCTACTGCGTCGTCCTCGGGGCCGCATCCCTTGCCGTGGCAAG
CCACGCCTTTCTGATGGGCAACCCCTTGAAAGCTGCACCCAAGGCTGCTG
CTTGCTCATCCACCACCTGCATGGCCGTCACCCTGCCGGCCCTTCCCTAC
GCCGACACCGCCCTGGAACCCTTGATCTCCAAGAGGACCTTGGACATCCA
CCATGGGAAGCACCACGCCAAGTACGTGACGGTGACGAACGAGATGATCA
AGGGCACCGACCTCGAGAATGCCTCGTTGGAGGAGATCGTTAAGGCGGCT
AAGGGCAAGAACCAGGGTCTGTTCAACAACGCCGCGCAGGTCTGGAACCA
CAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGGGGGCGTGCCCACGG
GCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGGGTTACGAGGCTTTC
AGGAAGCAGTTCGCGGCAGACTCGAACGGGAACTTCGGAAGTGGGTGGAC
CTGGTTGGCGATGAAGGGTGACAAGCTTCAGATCGTCAAGACTAGCAATG
CCGATGTTCCCATTACGGACGGGATGACGCCCCTGCTGGTGATTGATGTG
TGGGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGTACGT
GGACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCCAACC
TTGCCTAA
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Synonyms
Publications