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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:533709..535617 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01820.1 vs.
Match: EWM21849.1 (cytochrome c1 heme protein [Nannochloropsis gaditana]) HSP 1 Score: 544.3 bits (1401), Expect = 2.300e-151 Identity = 262/282 (92.91%), Postives = 272/282 (96.45%), Query Frame = 0
Query: 1 MFSRAKVAFRRAAVVPPAVKEGKGKVIGALVAGTAVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHSEEEVKKIAEAYDVIDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARGGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVAVFLAWAAEPEHDYRKKAGVQWIGALLAALALTGFYKRFRWSTLKTAKFHYVA 283
MFSRA AF+R +PP+ ++GKGK++GALVAGTAVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTH+EEEVKKIAE+YDV+DGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKAR GGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVA FLAWAAEPEHDYRKKAGVQWIGALL ALALTGFYKRFRWS LKTAKFHYVA
Sbjct: 22 MFSRAAAAFKRVRFIPPSAQDGKGKLMGALVAGTAVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHTEEEVKKIAESYDVVDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARPGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVATFLAWAAEPEHDYRKKAGVQWIGALLVALALTGFYKRFRWSPLKTAKFHYVA 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01820.1 ID=NO13G01820.1|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp ACTACAGCCTTTGGGTAACCCCTCCAAGAGGATGTTTTCTCGCGCGAAAG TGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCCGCCGTCAAGGAGGGTAAG GGCAAGGTGATCGGTGCCCTGGTAGCAGGCACGGCAGTGGCAGGCGGGGT CGCCGTGTGCAGTGCGGACCACGTCCCTTCGATTGATTACGGATGGAACC ACCACGGTCTCCTGGCGTCGTATGACTACCCTGCCGTACGCCGCGGCTTC CAAGTCTACCGCGAAGTCTGCGCATCTTGCCACGCCCTCGAGCACACCTA CTTTCGCAATCTGGTAGGGGTGACCCATTCCGAGGAGGAGGTGAAGAAGA TTGCTGAGGCGTATGATGTCATCGATGGCCCTAACGCCGAGGGAGAGATG TTTGAGCGCCCTGGAAAGTTGTCCGACAAGATTCCGGGCCCCTACGCCAA CAAGGAAGCTGCCCGCGCTGCGAACAATGGAGCGTACCCTCCCGACCTCT CCCTCATCACCAAGGCGCGTGGTGGTGGGGTTGACTACATTTTTGCGTTG CTGACTGGGTACATCGACCCCCCCGAGGGAAAGGCGATCCTTAGCGGGCT TAACTACAACCCGTACTTCCCTGGAGGAGCCATCGCGATGGCAAGGCAGC TTCAAGACGGGCAGTTGGAGTACGAGGACGGGACGCCCGCCACAACCTCG CAGATGTCGAAGGACGTGGCTGTCTTCCTGGCTTGGGCTGCAGAGCCTGA ACATGACTACAGGAAGAAGGCGGGTGTGCAGTGGATTGGGGCGTTGCTAG CTGCTTTAGCCTTGACGGGTTTCTACAAGCGGTTCAGGTGGTCGACGCTG AAGACGGCCAAGTTCCATTATGTGGCGTAAGGGAGGGACGTAGGGAGGAA GGGGTGTGGTGGGTGGCGCAGCATTGGTTGGGGTCTTGATCGGGTTTATG AGGTCTCGGGGCTCGACGGTTCAGGCGGCTAAGTTTCGTCAAGGAGGGAC CTTCTACCTGTTAGCTCTGCCCGGTGGATGCATGTATGGTTGCCGATGCC CGATGGGTCTGTGTGTGGTTCAATGAGAGAGAGAGGCCGTATATAATAGA GGGAGAGAGAAGATGGAAACCAAGACTTAAGGGATTGAAGGAGGGAGGGC GCCAAAGATGATAAACGAATGGGAGTAAACGCCCGCATTTTAATAGATAC CAGCGGGAGTAAATACGAAGAAGGGAGACAAATCGATGGAGGAGTCCCCG GCCGCAAGCAAAAACACTCAAAAAAAGAAGTCGGAAACA back to topprotein sequence of NO13G01820.1 >NO13G01820.1-protein ID=NO13G01820.1-protein|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp MFSRAKVAFRRAAVVPPAVKEGKGKVIGALVAGTAVAGGVAVCSADHVPS IDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHS EEEVKKIAEAYDVIDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNG AYPPDLSLITKARGGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGA IAMARQLQDGQLEYEDGTPATTSQMSKDVAVFLAWAAEPEHDYRKKAGVQ WIGALLAALALTGFYKRFRWSTLKTAKFHYVA* back to topmRNA from alignment at chr13:533709..535617- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01820.1 ID=NO13G01820.1|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp|location=Sequence derived from alignment at chr13:533709..535617- (Nannochloropsis oceanica) ACTACAGCCTTTGGGTAACCCCTCCAAGAGGATGTTTTCTCGCGCGAAAG
TGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCCGCCGTCAAGGTATGTTGT
TGGGAGGGAGGAATCGAGGCGGATGACTACAGGGTTCTAGTATCGCACCG
CGGCAAATAGGATTGAGGCTTCGCATTCGATACCGCGTGCTCATGCTTGA
CCTCTTCTACACACACGCACGTTACAATGCCTCCTAACGACCCATAGGAG
GGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCACGGCAGTGGCAGG
CGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCGATTGATTACGGAT
GGAACCACCACGGTCTCCTGGCGTCGTATGACTACCCTGCGTAAGTTCTG
CAGCTAAGAGTGTCATGCTTGCCCGGAGGGTACTTTGGGGCGTCGAGAGT
GGCGTGACGTGCACGGGGTTCTTTTCTCTGAGGCCTTTTTTTTCCCGTGT
GGCAGGCTGCACCGCATCGGAGGATGTGGAGGAAGTGGAGCCATCGGTCT
TGCCTCGTTTGAATCTTTCTCGAGATCTACTGTTGTGACGCACATTTTTT
TCGACTCCTACTTTCCTTTTCTGGTTCACCAAAAATTCACCTTTTTTCCC
TCCCTCTTCCCCTCCCTCCCTTCCTCGACACCTCACCTGCAGCGTACGCC
GCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCCACGCCCTCGAG
CACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCCGAGGAGGAGGT
GAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCCTAACGCCGAGG
GAGAGATGTTTGAGCGCCCTGGAAAGGTACATCCTTCCCTCCCTTCCTCC
CTTCGTGTTCACTTGGATTTTCCTTCCCTTTTCCATAATATCTTGAGTCG
TATATCTCTTTCTAACGTGACACTTGCCCCCTCCCCCCTCCCCCCTCCCT
ACCTCCCTCCCTCCCTGCCTCCCTGTGCCTTCCTTCAGTTGTCCGACAAG
ATTCCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGG
AGCGTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGG
TTGACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGA
AAGGCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGC
CATCGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACG
GGACGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTG
GCTTGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCA
GTGGATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGC
GGTTCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAA
GGGAGGGACGTAGGGAGGAAGGGGTGTGGTGGGTGGCGCAGCATTGGTTG
GGGTCTTGATCGGGTTTATGAGGTCTCGGGGCTCGACGGTTCAGGCGGCT
AAGTTTCGTCAAGGAGGGACCTTCTACCTGTTAGCTCTGCCCGGTGGATG
CATGTATGGTTGCCGATGCCCGATGGGTCTGTGTGTGGTTCAATGAGAGA
GAGAGGCCGTATATAATAGAGGGAGAGAGAAGATGGAAACCAAGACTTAA
GGGATTGAAGGAGGGAGGGCGCCAAAGATGATAAACGAATGGGAGTAAAC
GCCCGCATTTTAATAGATACCAGCGGGAGTAAATACGAAGAAGGGAGACA
AATCGATGGAGGAGTCCCCGGCCGCAAGCAAAAACACTCAAAAAAAGAAG
TCGGAAACA back to topCoding sequence (CDS) from alignment at chr13:533709..535617- >NO13G01820.1 ID=NO13G01820.1|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr13:533709..535617- (Nannochloropsis oceanica) ATGTTTTCTCGCGCGAAAGTGGCCTTTAGGCGGGCCGCGGTCGTCCCGCC CGCCGTCAAGGAGGGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCA CGGCAGTGGCAGGCGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCG ATTGATTACGGATGGAACCACCACGGTCTCCTGGCGTCGTATGACTACCC TGCCGTACGCCGCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCC ACGCCCTCGAGCACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCC GAGGAGGAGGTGAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCC TAACGCCGAGGGAGAGATGTTTGAGCGCCCTGGAAAGTTGTCCGACAAGA TTCCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGA GCGTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGT TGACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAA AGGCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCC ATCGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGG GACGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGG CTTGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAG TGGATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCG GTTCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAA back to top
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