NO13G01820.1, NO13G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01820.1
Unique NameNO13G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1289
Alignment locationchr13:533709..535617 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:533709..535617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01820.1 vs.
Match: EWM21849.1 (cytochrome c1 heme protein [Nannochloropsis gaditana])

HSP 1 Score: 544.3 bits (1401), Expect = 2.300e-151
Identity = 262/282 (92.91%), Postives = 272/282 (96.45%), Query Frame = 0
Query:    1 MFSRAKVAFRRAAVVPPAVKEGKGKVIGALVAGTAVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHSEEEVKKIAEAYDVIDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARGGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVAVFLAWAAEPEHDYRKKAGVQWIGALLAALALTGFYKRFRWSTLKTAKFHYVA 283
            MFSRA  AF+R   +PP+ ++GKGK++GALVAGTAVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTH+EEEVKKIAE+YDV+DGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKAR GGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVA FLAWAAEPEHDYRKKAGVQWIGALL ALALTGFYKRFRWS LKTAKFHYVA
Sbjct:   22 MFSRAAAAFKRVRFIPPSAQDGKGKLMGALVAGTAVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHTEEEVKKIAESYDVVDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARPGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVATFLAWAAEPEHDYRKKAGVQWIGALLVALALTGFYKRFRWSPLKTAKFHYVA 303          
The following BLAST results are available for this feature:
BLAST of NO13G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21849.12.300e-15192.91cytochrome c1 heme protein [Nannochloropsis gadita... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01820NO13G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01820.1NO13G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01820.1.cds1NO13G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01820.1.cds2NO13G01820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01820.1.cds3NO13G01820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01820.1.cds4NO13G01820.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01820.1 ID=NO13G01820.1|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp
ACTACAGCCTTTGGGTAACCCCTCCAAGAGGATGTTTTCTCGCGCGAAAG
TGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCCGCCGTCAAGGAGGGTAAG
GGCAAGGTGATCGGTGCCCTGGTAGCAGGCACGGCAGTGGCAGGCGGGGT
CGCCGTGTGCAGTGCGGACCACGTCCCTTCGATTGATTACGGATGGAACC
ACCACGGTCTCCTGGCGTCGTATGACTACCCTGCCGTACGCCGCGGCTTC
CAAGTCTACCGCGAAGTCTGCGCATCTTGCCACGCCCTCGAGCACACCTA
CTTTCGCAATCTGGTAGGGGTGACCCATTCCGAGGAGGAGGTGAAGAAGA
TTGCTGAGGCGTATGATGTCATCGATGGCCCTAACGCCGAGGGAGAGATG
TTTGAGCGCCCTGGAAAGTTGTCCGACAAGATTCCGGGCCCCTACGCCAA
CAAGGAAGCTGCCCGCGCTGCGAACAATGGAGCGTACCCTCCCGACCTCT
CCCTCATCACCAAGGCGCGTGGTGGTGGGGTTGACTACATTTTTGCGTTG
CTGACTGGGTACATCGACCCCCCCGAGGGAAAGGCGATCCTTAGCGGGCT
TAACTACAACCCGTACTTCCCTGGAGGAGCCATCGCGATGGCAAGGCAGC
TTCAAGACGGGCAGTTGGAGTACGAGGACGGGACGCCCGCCACAACCTCG
CAGATGTCGAAGGACGTGGCTGTCTTCCTGGCTTGGGCTGCAGAGCCTGA
ACATGACTACAGGAAGAAGGCGGGTGTGCAGTGGATTGGGGCGTTGCTAG
CTGCTTTAGCCTTGACGGGTTTCTACAAGCGGTTCAGGTGGTCGACGCTG
AAGACGGCCAAGTTCCATTATGTGGCGTAAGGGAGGGACGTAGGGAGGAA
GGGGTGTGGTGGGTGGCGCAGCATTGGTTGGGGTCTTGATCGGGTTTATG
AGGTCTCGGGGCTCGACGGTTCAGGCGGCTAAGTTTCGTCAAGGAGGGAC
CTTCTACCTGTTAGCTCTGCCCGGTGGATGCATGTATGGTTGCCGATGCC
CGATGGGTCTGTGTGTGGTTCAATGAGAGAGAGAGGCCGTATATAATAGA
GGGAGAGAGAAGATGGAAACCAAGACTTAAGGGATTGAAGGAGGGAGGGC
GCCAAAGATGATAAACGAATGGGAGTAAACGCCCGCATTTTAATAGATAC
CAGCGGGAGTAAATACGAAGAAGGGAGACAAATCGATGGAGGAGTCCCCG
GCCGCAAGCAAAAACACTCAAAAAAAGAAGTCGGAAACA
back to top

protein sequence of NO13G01820.1

>NO13G01820.1-protein ID=NO13G01820.1-protein|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MFSRAKVAFRRAAVVPPAVKEGKGKVIGALVAGTAVAGGVAVCSADHVPS
IDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHS
EEEVKKIAEAYDVIDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNG
AYPPDLSLITKARGGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGA
IAMARQLQDGQLEYEDGTPATTSQMSKDVAVFLAWAAEPEHDYRKKAGVQ
WIGALLAALALTGFYKRFRWSTLKTAKFHYVA*
back to top

mRNA from alignment at chr13:533709..535617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01820.1 ID=NO13G01820.1|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp|location=Sequence derived from alignment at chr13:533709..535617- (Nannochloropsis oceanica)
ACTACAGCCTTTGGGTAACCCCTCCAAGAGGATGTTTTCTCGCGCGAAAG TGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCCGCCGTCAAGGTATGTTGT TGGGAGGGAGGAATCGAGGCGGATGACTACAGGGTTCTAGTATCGCACCG CGGCAAATAGGATTGAGGCTTCGCATTCGATACCGCGTGCTCATGCTTGA CCTCTTCTACACACACGCACGTTACAATGCCTCCTAACGACCCATAGGAG GGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCACGGCAGTGGCAGG CGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCGATTGATTACGGAT GGAACCACCACGGTCTCCTGGCGTCGTATGACTACCCTGCGTAAGTTCTG CAGCTAAGAGTGTCATGCTTGCCCGGAGGGTACTTTGGGGCGTCGAGAGT GGCGTGACGTGCACGGGGTTCTTTTCTCTGAGGCCTTTTTTTTCCCGTGT GGCAGGCTGCACCGCATCGGAGGATGTGGAGGAAGTGGAGCCATCGGTCT TGCCTCGTTTGAATCTTTCTCGAGATCTACTGTTGTGACGCACATTTTTT TCGACTCCTACTTTCCTTTTCTGGTTCACCAAAAATTCACCTTTTTTCCC TCCCTCTTCCCCTCCCTCCCTTCCTCGACACCTCACCTGCAGCGTACGCC GCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCCACGCCCTCGAG CACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCCGAGGAGGAGGT GAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCCTAACGCCGAGG GAGAGATGTTTGAGCGCCCTGGAAAGGTACATCCTTCCCTCCCTTCCTCC CTTCGTGTTCACTTGGATTTTCCTTCCCTTTTCCATAATATCTTGAGTCG TATATCTCTTTCTAACGTGACACTTGCCCCCTCCCCCCTCCCCCCTCCCT ACCTCCCTCCCTCCCTGCCTCCCTGTGCCTTCCTTCAGTTGTCCGACAAG ATTCCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGG AGCGTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGG TTGACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGA AAGGCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGC CATCGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACG GGACGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTG GCTTGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCA GTGGATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGC GGTTCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAA GGGAGGGACGTAGGGAGGAAGGGGTGTGGTGGGTGGCGCAGCATTGGTTG GGGTCTTGATCGGGTTTATGAGGTCTCGGGGCTCGACGGTTCAGGCGGCT AAGTTTCGTCAAGGAGGGACCTTCTACCTGTTAGCTCTGCCCGGTGGATG CATGTATGGTTGCCGATGCCCGATGGGTCTGTGTGTGGTTCAATGAGAGA GAGAGGCCGTATATAATAGAGGGAGAGAGAAGATGGAAACCAAGACTTAA GGGATTGAAGGAGGGAGGGCGCCAAAGATGATAAACGAATGGGAGTAAAC GCCCGCATTTTAATAGATACCAGCGGGAGTAAATACGAAGAAGGGAGACA AATCGATGGAGGAGTCCCCGGCCGCAAGCAAAAACACTCAAAAAAAGAAG TCGGAAACA
back to top

Coding sequence (CDS) from alignment at chr13:533709..535617-

>NO13G01820.1 ID=NO13G01820.1|Name=NO13G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr13:533709..535617- (Nannochloropsis oceanica)
ATGTTTTCTCGCGCGAAAGTGGCCTTTAGGCGGGCCGCGGTCGTCCCGCC
CGCCGTCAAGGAGGGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCA
CGGCAGTGGCAGGCGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCG
ATTGATTACGGATGGAACCACCACGGTCTCCTGGCGTCGTATGACTACCC
TGCCGTACGCCGCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCC
ACGCCCTCGAGCACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCC
GAGGAGGAGGTGAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCC
TAACGCCGAGGGAGAGATGTTTGAGCGCCCTGGAAAGTTGTCCGACAAGA
TTCCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGA
GCGTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGT
TGACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAA
AGGCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCC
ATCGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGG
GACGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGG
CTTGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAG
TGGATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCG
GTTCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAA
back to top
Synonyms
Publications