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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:526830..528836 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01800.1 vs.
Match: EWM21823.1 (calcium-dependent protein kinase [Nannochloropsis gaditana]) HSP 1 Score: 872.1 bits (2252), Expect = 1.100e-249 Identity = 478/658 (72.64%), Postives = 528/658 (80.24%), Query Frame = 0
Query: 4 TNSAPPAPPHGAAPAPPKSGGFPSNHPRVEQVYDLGRVLGKGSFSTVYLGVQKITGEEVALKVIPAKNYRHNERAKQLLRTEVAVMSRIRKLHHPNLMNFKHTFEDAEKIVMVLEILSGGELFDRIVKKGHYSERDASLLTGVIVRALGALHSVGILHRDLKPENCIYSTASEDSPLKITDFGLAALVSSPTDKLVDRHLVGTPGYICPAVLTSYEYSAASDIWAAGVILFILLSGSPPFYGRTHKEIFEKIKTAHWGFHGRNWSQVSEGAKDLVKRMLRQKPADRLTVEEVLDHPWIREHEQVSEEDLPGTLESLKLFSARQKFRAAVMVCVGSARMQRVKLAAAAAAAGGKEAKEG----REERKQEEEFLRGLFSEEELEMLKVEFGRVAAENAMTSPSTLEGNVGGKVLNFGQFREIMTRLGLDHLPLERIFKVFDSNGTGDVDYREFLVGVSKFRLRGTAALKFCFEVFDEDNSGAISREEMTKVLVHTRRKSLAVHHLVQQQREQESARMHVVGDSPVASAA-----VEGAGAGSAAGGGPMVVASDDGETAQVVEGGGRMGEKGGGEKGRLPPPVASFDPRFMEMDADAYEIAESIAELFDSLDQNKDNQVTLEEFMEGAKKHPGLLDVILGAGEG--------GVGEGGG 645
T+ A + P GA A +SG FPSNHPRVEQVYDLGRVLGKGSFSTVYLGV K +GEEVALKVIPAKNYR NERAKQLLRTEVAVMSRIRKLHHPNLMNFKHTFEDAEKIVMVLEILSGGELFDRIVKKGHYSERDASLLTGV+VRALGALHSVG+LHRDLKPENCIYST +EDSPLKITDFGLAALV+ PT++L+D+HLVGTPGYICPAVLT YEYSAASD+WA GVILFILLSGSPPFYGRTHKEIFEKIK+AHWGFHGRNWSQVS+GAKDLVKRMLRQ PA+RLTVEEVLDHPWIREHE VS EDLPGTLESLK FSARQKFRAA MVC+GS+RMQ++++ AAAA+G AKEG E EEEFL+GL S EELE LK+EFGR+AAENA +S + E K LN QF+EIMT L L HLPLER+F+VFD+ GTGDVDYREFLVG+SKFRL+G+ ALKFCF+VFDEDNSGA+SREE+TKVLVH+RRKS A GD P A A A AG A GP+VV SDDGE A VV G G +G E G P FDPR+MEMDA+ YE AESIA+LF+SLD + DNQVTLEEF+EGAK+HP L +V LG G G VG+GGG
Sbjct: 3 TSVASTSVPRGAKEASSRSG-FPSNHPRVEQVYDLGRVLGKGSFSTVYLGVHKASGEEVALKVIPAKNYRRNERAKQLLRTEVAVMSRIRKLHHPNLMNFKHTFEDAEKIVMVLEILSGGELFDRIVKKGHYSERDASLLTGVLVRALGALHSVGVLHRDLKPENCIYSTPAEDSPLKITDFGLAALVTCPTERLIDKHLVGTPGYICPAVLTGYEYSAASDMWAVGVILFILLSGSPPFYGRTHKEIFEKIKSAHWGFHGRNWSQVSDGAKDLVKRMLRQIPAERLTVEEVLDHPWIREHESVSAEDLPGTLESLKKFSARQKFRAAAMVCIGSSRMQQLRM--AAAASGASSAKEGDVDDGEGETAEEEFLQGLLSAEELENLKIEFGRIAAENAASSMQSPEKTTLRKALNLDQFKEIMTGLHLGHLPLERMFQVFDTGGTGDVDYREFLVGMSKFRLQGSTALKFCFDVFDEDNSGALSREELTKVLVHSRRKS--------------QASTAAGGDGPRARKAHIRRRTMEAPAGPAV-KGPVVVQSDDGEVAHVV-GEGGLGTDEATETG---PEAREFDPRYMEMDAEVYEEAESIAQLFESLDTDNDNQVTLEEFLEGAKRHPELCEVFLGRGWGDDGCPKDSDVGKGGG 638
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01800.1 ID=NO13G01800.1|Name=NO13G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
ATGGCTACGACCAACTCGGCGCCGCCGGCGCCGCCCCACGGTGCCGCCCC
CGCGCCGCCAAAGAGCGGCGGTTTCCCGTCCAACCACCCACGGGTGGAGC
AAGTGTATGACCTGGGACGCGTGCTCGGCAAGGGCAGCTTTAGCACAGTT
TACTTAGGCGTGCAGAAGATCACGGGGGAGGAAGTAGCGCTGAAGGTAAT
CCCGGCCAAGAATTACCGGCACAACGAGCGGGCCAAACAATTGCTGCGGA
CGGAGGTGGCGGTAATGAGCCGCATTCGGAAGCTGCATCACCCTAATTTG
ATGAACTTTAAGCACACATTTGAGGATGCGGAGAAGATAGTCATGGTCCT
CGAGATCCTCTCCGGCGGGGAACTATTCGACCGCATCGTGAAGAAAGGCC
ATTACTCCGAACGAGACGCCAGCCTGCTTACGGGCGTGATTGTCCGTGCC
CTGGGTGCATTGCACTCTGTGGGTATCCTCCACCGGGACCTTAAGCCCGA
AAACTGCATCTATTCAACTGCCTCCGAAGACTCTCCCTTAAAAATCACTG
ACTTTGGCCTTGCGGCACTCGTCTCCTCTCCGACGGATAAATTGGTGGAC
AGGCACTTGGTGGGTACACCTGGGTACATCTGCCCCGCAGTATTAACAAG
TTATGAGTATAGTGCTGCCAGCGATATCTGGGCCGCGGGGGTAATCTTAT
TTATTCTTTTGAGTGGCTCGCCGCCGTTCTACGGTCGGACGCACAAGGAG
ATCTTTGAGAAGATCAAGACAGCCCATTGGGGCTTTCACGGTCGGAATTG
GAGCCAGGTCTCAGAGGGGGCAAAGGACTTGGTGAAGCGAATGCTGAGGC
AGAAGCCGGCGGACAGGCTGACGGTGGAGGAGGTGTTGGATCACCCGTGG
ATCAGGGAGCATGAGCAGGTGTCGGAGGAGGACCTGCCGGGGACTTTGGA
AAGCTTGAAATTGTTCAGCGCCAGGCAGAAGTTCCGGGCGGCGGTGATGG
TATGTGTTGGCTCGGCGAGGATGCAGAGGGTGAAATTGGCGGCAGCGGCA
GCTGCTGCTGGTGGGAAGGAAGCGAAAGAAGGGAGAGAGGAGAGGAAGCA
GGAGGAGGAGTTCTTGCGGGGGTTGTTTTCGGAGGAGGAGCTTGAGATGC
TGAAGGTGGAGTTTGGACGAGTAGCGGCTGAGAATGCAATGACGAGCCCA
AGTACCCTCGAGGGAAATGTGGGGGGGAAGGTGCTGAATTTCGGCCAGTT
TAGGGAGATTATGACACGCTTAGGCCTGGATCATTTGCCGCTGGAAAGGA
TATTTAAGGTGTTCGATTCGAATGGAACGGGGGATGTGGACTATCGGGAG
TTTTTGGTGGGGGTGAGCAAATTCAGGCTGCGGGGGACTGCGGCGCTGAA
GTTTTGTTTCGAGGTGTTTGATGAGGATAACAGCGGGGCGATTTCCAGGG
AAGAGATGACGAAGGTGCTGGTGCACACGAGGAGGAAGAGCTTGGCGGTT
CATCACCTCGTGCAGCAGCAGCGGGAGCAGGAATCTGCGAGGATGCACGT
TGTGGGCGATTCGCCCGTTGCGTCGGCGGCGGTGGAAGGAGCAGGAGCAG
GATCGGCAGCAGGAGGAGGGCCTATGGTGGTTGCGTCAGATGACGGGGAG
ACCGCTCAGGTGGTGGAGGGGGGAGGGAGGATGGGAGAAAAAGGAGGCGG
GGAAAAAGGAAGGTTACCCCCTCCAGTGGCGTCGTTTGATCCCAGGTTCA
TGGAGATGGACGCGGATGCGTACGAGATAGCGGAAAGCATAGCGGAGTTA
TTTGATAGTCTTGATCAGAATAAGGATAATCAGGTGACGTTGGAAGAGTT
TATGGAGGGGGCGAAGAAGCATCCGGGTTTGTTGGATGTCATCCTCGGAG
CGGGGGAAGGAGGGGTAGGAGAAGGAGGAGGGAGAGGTGGAAAGGAGAGA
GGAGAGCGGGCTCATGGAGCATTGGGGGGGGCGAAGGAAGGGCATGGATT
AATTTAA back to topprotein sequence of NO13G01800.1 >NO13G01800.1-protein ID=NO13G01800.1-protein|Name=NO13G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MATTNSAPPAPPHGAAPAPPKSGGFPSNHPRVEQVYDLGRVLGKGSFSTV
YLGVQKITGEEVALKVIPAKNYRHNERAKQLLRTEVAVMSRIRKLHHPNL
MNFKHTFEDAEKIVMVLEILSGGELFDRIVKKGHYSERDASLLTGVIVRA
LGALHSVGILHRDLKPENCIYSTASEDSPLKITDFGLAALVSSPTDKLVD
RHLVGTPGYICPAVLTSYEYSAASDIWAAGVILFILLSGSPPFYGRTHKE
IFEKIKTAHWGFHGRNWSQVSEGAKDLVKRMLRQKPADRLTVEEVLDHPW
IREHEQVSEEDLPGTLESLKLFSARQKFRAAVMVCVGSARMQRVKLAAAA
AAAGGKEAKEGREERKQEEEFLRGLFSEEELEMLKVEFGRVAAENAMTSP
STLEGNVGGKVLNFGQFREIMTRLGLDHLPLERIFKVFDSNGTGDVDYRE
FLVGVSKFRLRGTAALKFCFEVFDEDNSGAISREEMTKVLVHTRRKSLAV
HHLVQQQREQESARMHVVGDSPVASAAVEGAGAGSAAGGGPMVVASDDGE
TAQVVEGGGRMGEKGGGEKGRLPPPVASFDPRFMEMDADAYEIAESIAEL
FDSLDQNKDNQVTLEEFMEGAKKHPGLLDVILGAGEGGVGEGGGRGGKER
GERAHGALGGAKEGHGLI* back to topmRNA from alignment at chr13:526830..528836- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01800.1 ID=NO13G01800.1|Name=NO13G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr13:526830..528836- (Nannochloropsis oceanica)
ATGGCTACGACCAACTCGGCGCCGCCGGCGCCGCCCCACGGTGCCGCCCC
CGCGCCGCCAAAGAGCGGCGGTTTCCCGTCCAACCACCCACGGGTGGAGC
AAGTGTATGACCTGGGACGCGTGCTCGGCAAGGGCAGCTTTAGCACAGTT
TACTTAGGCGTGCAGAAGATCACGGGGGAGGAAGTAGCGCTGAAGGTAAT
CCCGGCCAAGAATTACCGGCACAACGAGCGGGCCAAACAATTGCTGCGGA
CGGAGGTGGCGGTAATGAGCCGCATTCGGAAGCTGCATCACCCTAATTTG
ATGAACTTTAAGCACACATTTGAGGATGCGGAGAAGATAGTCATGGTCCT
CGAGATCCTCTCCGGCGGGGAACTATTCGACCGCATCGTGAAGAAAGGCC
ATTACTCCGAACGAGACGCCAGCCTGCTTACGGGCGTGATTGTCCGTGCC
CTGGGTGCATTGCACTCTGTGGGTATCCTCCACCGGGACCTTAAGCCCGA
AAACTGCATCTATTCAACTGCCTCCGAAGACTCTCCCTTAAAAATCACTG
ACTTTGGCCTTGCGGCACTCGTCTCCTCTCCGACGGATAAATTGGTGGAC
AGGCACTTGGTGGGTACACCTGGGTACATCTGCCCCGCAGTATTAACAAG
TTATGAGTATAGTGCTGCCAGCGATATCTGGGCCGCGGGGGTAATCTTAT
TTATTCTTTTGAGTGGCTCGCCGCCGTTCTACGGTCGGACGCACAAGGAG
ATCTTTGAGAAGATCAAGACAGCCCATTGGGGCTTTCACGGTCGGAATTG
GAGCCAGGTCTCAGAGGGGGCAAAGGACTTGGTGAAGCGAATGCTGAGGC
AGAAGCCGGCGGACAGGCTGACGGTGGAGGAGGTGTTGGATCACCCGTGG
ATCAGGGAGCATGAGCAGGTGTCGGAGGAGGACCTGCCGGGGACTTTGGA
AAGCTTGAAATTGTTCAGCGCCAGGCAGAAGTTCCGGGCGGCGGTGATGG
TATGTGTTGGCTCGGCGAGGATGCAGAGGGTGAAATTGGCGGCAGCGGCA
GCTGCTGCTGGTGGGAAGGAAGCGAAAGAAGGGAGAGAGGAGAGGAAGCA
GGAGGAGGAGTTCTTGCGGGGGTTGTTTTCGGAGGAGGAGCTTGAGATGC
TGAAGGTGGAGTTTGGACGAGTAGCGGCTGAGAATGCAATGACGAGCCCA
AGTACCCTCGAGGGAAATGTGGGGGGGAAGGTGCTGAATTTCGGCCAGTT
TAGGGAGATTATGACACGCTTAGGCCTGGATCATTTGCCGCTGGAAAGGA
TATTTAAGGTGTTCGATTCGAATGGAACGGGGGATGTGGACTATCGGGAG
TTTTTGGTGGGGGTGAGCAAATTCAGGCTGCGGGGGACTGCGGCGCTGAA
GTTTTGTTTCGAGGTGTTTGATGAGGATAACAGCGGGGCGATTTCCAGGG
AAGAGATGACGAAGGTGCTGGTGCACACGAGGAGGAAGAGCTTGGCGGTT
CATCACCTCGTGCAGCAGCAGCGGGAGCAGGAATCTGCGAGGATGCACGT
TGTGGGCGATTCGCCCGTTGCGTCGGCGGCGGTGGAAGGAGCAGGAGCAG
GATCGGCAGCAGGAGGAGGGCCTATGGTGGTTGCGTCAGATGACGGGGAG
ACCGCTCAGGTGGTGGAGGGGGGAGGGAGGATGGGAGAAAAAGGAGGCGG
GGAAAAAGGAAGGTTACCCCCTCCAGTGGCGTCGTTTGATCCCAGGTTCA
TGGAGATGGACGCGGATGCGTACGAGATAGCGGAAAGCATAGCGGAGTTA
TTTGATAGTCTTGATCAGAATAAGGATAATCAGGTGACGTTGGAAGAGTT
TATGGAGGGGGCGAAGAAGCATCCGGGTTTGTTGGATGTCATCCTCGGAG
CGGGGGAAGGAGGGGTAGGAGAAGGAGGAGGGAGAGGTGGAAAGGAGAGA
GGAGAGCGGGCTCATGGAGCATTGGGGGGGGCGAAGGAAGGGCATGGATT
AATTTAA back to topCoding sequence (CDS) from alignment at chr13:526830..528836- >NO13G01800.1 ID=NO13G01800.1|Name=NO13G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at chr13:526830..528836- (Nannochloropsis oceanica)
ATGGCTACGACCAACTCGGCGCCGCCGGCGCCGCCCCACGGTGCCGCCCC
CGCGCCGCCAAAGAGCGGCGGTTTCCCGTCCAACCACCCACGGGTGGAGC
AAGTGTATGACCTGGGACGCGTGCTCGGCAAGGGCAGCTTTAGCACAGTT
TACTTAGGCGTGCAGAAGATCACGGGGGAGGAAGTAGCGCTGAAGGTAAT
CCCGGCCAAGAATTACCGGCACAACGAGCGGGCCAAACAATTGCTGCGGA
CGGAGGTGGCGGTAATGAGCCGCATTCGGAAGCTGCATCACCCTAATTTG
ATGAACTTTAAGCACACATTTGAGGATGCGGAGAAGATAGTCATGGTCCT
CGAGATCCTCTCCGGCGGGGAACTATTCGACCGCATCGTGAAGAAAGGCC
ATTACTCCGAACGAGACGCCAGCCTGCTTACGGGCGTGATTGTCCGTGCC
CTGGGTGCATTGCACTCTGTGGGTATCCTCCACCGGGACCTTAAGCCCGA
AAACTGCATCTATTCAACTGCCTCCGAAGACTCTCCCTTAAAAATCACTG
ACTTTGGCCTTGCGGCACTCGTCTCCTCTCCGACGGATAAATTGGTGGAC
AGGCACTTGGTGGGTACACCTGGGTACATCTGCCCCGCAGTATTAACAAG
TTATGAGTATAGTGCTGCCAGCGATATCTGGGCCGCGGGGGTAATCTTAT
TTATTCTTTTGAGTGGCTCGCCGCCGTTCTACGGTCGGACGCACAAGGAG
ATCTTTGAGAAGATCAAGACAGCCCATTGGGGCTTTCACGGTCGGAATTG
GAGCCAGGTCTCAGAGGGGGCAAAGGACTTGGTGAAGCGAATGCTGAGGC
AGAAGCCGGCGGACAGGCTGACGGTGGAGGAGGTGTTGGATCACCCGTGG
ATCAGGGAGCATGAGCAGGTGTCGGAGGAGGACCTGCCGGGGACTTTGGA
AAGCTTGAAATTGTTCAGCGCCAGGCAGAAGTTCCGGGCGGCGGTGATGG
TATGTGTTGGCTCGGCGAGGATGCAGAGGGTGAAATTGGCGGCAGCGGCA
GCTGCTGCTGGTGGGAAGGAAGCGAAAGAAGGGAGAGAGGAGAGGAAGCA
GGAGGAGGAGTTCTTGCGGGGGTTGTTTTCGGAGGAGGAGCTTGAGATGC
TGAAGGTGGAGTTTGGACGAGTAGCGGCTGAGAATGCAATGACGAGCCCA
AGTACCCTCGAGGGAAATGTGGGGGGGAAGGTGCTGAATTTCGGCCAGTT
TAGGGAGATTATGACACGCTTAGGCCTGGATCATTTGCCGCTGGAAAGGA
TATTTAAGGTGTTCGATTCGAATGGAACGGGGGATGTGGACTATCGGGAG
TTTTTGGTGGGGGTGAGCAAATTCAGGCTGCGGGGGACTGCGGCGCTGAA
GTTTTGTTTCGAGGTGTTTGATGAGGATAACAGCGGGGCGATTTCCAGGG
AAGAGATGACGAAGGTGCTGGTGCACACGAGGAGGAAGAGCTTGGCGGTT
CATCACCTCGTGCAGCAGCAGCGGGAGCAGGAATCTGCGAGGATGCACGT
TGTGGGCGATTCGCCCGTTGCGTCGGCGGCGGTGGAAGGAGCAGGAGCAG
GATCGGCAGCAGGAGGAGGGCCTATGGTGGTTGCGTCAGATGACGGGGAG
ACCGCTCAGGTGGTGGAGGGGGGAGGGAGGATGGGAGAAAAAGGAGGCGG
GGAAAAAGGAAGGTTACCCCCTCCAGTGGCGTCGTTTGATCCCAGGTTCA
TGGAGATGGACGCGGATGCGTACGAGATAGCGGAAAGCATAGCGGAGTTA
TTTGATAGTCTTGATCAGAATAAGGATAATCAGGTGACGTTGGAAGAGTT
TATGGAGGGGGCGAAGAAGCATCCGGGTTTGTTGGATGTCATCCTCGGAG
CGGGGGAAGGAGGGGTAGGAGAAGGAGGAGGGAGAGGTGGAAAGGAGAGA
GGAGAGCGGGCTCATGGAGCATTGGGGGGGGCGAAGGAAGGGCATGGATT
AATTTAA back to top
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