NO13G01770.1, NO13G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01770.1
Unique NameNO13G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1510
Alignment locationchr13:519001..521268 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:519001..521268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01770.1 vs.
Match: EWM21825.1 (rab7 family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 397.9 bits (1021), Expect = 2.000e-107
Identity = 187/209 (89.47%), Postives = 198/209 (94.74%), Query Frame = 0 
Query:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDITNPKSFENLEHWRTDFLHNASPPDPDNFPFLVLGNKADLESERKVTKQKAMAWTKSKGPKAIPYFETSAKDATRVEGAFLEAAQLALARVSQEKDDYFPDTINLAQPMPRRGAESSACC 210
            MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYD+TNPKSF+NLEHWRTDFLHNASPPDPDNFPF+VLGNKAD+E++RKV K KA+ WTKSKGPK +PYFETSAKDATRVE AFLEAAQLAL +VSQEKDDYFPDTINL+QP  RR AE + CC
Sbjct:    1 MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDVMIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDMTNPKSFDNLEHWRTDFLHNASPPDPDNFPFIVLGNKADMEADRKVPKHKALTWTKSKGPKPLPYFETSAKDATRVEAAFLEAAQLALEQVSQEKDDYFPDTINLSQPATRRSAEPAGCC 209
The following BLAST results are available for this feature:
BLAST of NO13G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21825.12.000e-10789.47rab7 family gtpase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01770NO13G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01770.1NO13G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01770.1.cds1NO13G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01770.1.cds2NO13G01770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01770.1.cds3NO13G01770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01770.1.cds4NO13G01770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01770.1.cds5NO13G01770.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01770.1 ID=NO13G01770.1|Name=NO13G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
ACAGCTTTGTACGTGTACGACTGACACATAAACAAACGCCACACCCACGT
GAAGGAAAGCATGGCGCATCGGAAGAAAGTACTGTTTAAGTACATAATCC
TGGGAGACTCGGGGGTGGGTAAGACATGCCTGATGAACCAGTACGTGCAA
AAGCGCTTCGACAAGACATACAAAGCCACCATCGGGGCGGATTTCCTGAC
CAAAGACGTGATGATAGATGATAAGCTCGTCACTTTGCAGATCTGGGACA
CGGCCGGGCAAGAGAAATTCCAGTCGCTGGGCCAGGCGTTTTACCGGGGC
GCGGACGTATGCATGCTCGTCTATGACATCACTAACCCCAAGTCTTTTGA
AAATCTGGAGCACTGGCGTACGGACTTCCTCCACAACGCCTCCCCACCCG
ACCCAGACAATTTCCCTTTCCTTGTGCTGGGAAATAAGGCTGATTTGGAA
TCAGAACGGAAGGTGACCAAGCAGAAGGCAATGGCGTGGACCAAAAGCAA
GGGCCCGAAGGCCATCCCTTACTTCGAGACGAGTGCCAAGGATGCAACTA
GGGTAGAAGGCGCCTTCCTGGAGGCGGCCCAGTTGGCGTTGGCGCGGGTG
TCTCAGGAGAAGGATGACTACTTCCCCGATACCATCAACCTCGCCCAGCC
CATGCCGAGGAGGGGCGCCGAGTCCTCCGCCTGCTGTTAGAGGGAGGGAG
GGCGGATCGACAGGAAGGATGGGACGAGAGAATGATTTTGGATGTATAGC
GAAATAGTACCAGTAAAGAGCAGCAGCAGCAACAACAGCAACAACAACAA
CAGCAGCAGCAGCAGCAGCAACAGCAGCAGTTGCAGGGGCGTGCAGAGTA
AGAGAAAATGTCGGGAGGGTAGGAGGGAGGGAGAGAGGAGGGAGGATAGG
AGACACTGGATGAGCAAGGAACCAAAGGTGGCTCGGCGGGTGATCAATCA
GCAAGTGGAGGGGAGACGACAGGAGCGGTCTTCTGCTTGCTGTTCTTCTT
GTTGCTCTCGTTCGTCTTCTTCTTCTTTTTCTTCTTCTTTTTCTTCTTCT
TTTTCTTCTTCTTCTTTTTCTTCTTCTTCTTGTTCTTCTTCTTCTTCTTC
TTCTTTATTATATGTTTGCTTGTCATTGTCGCCGTCACTTTCTGAGTAAG
GTGGACTCCCTCGCCATCTCTTCCCTTGCGTATCCGTCGGCCGTTCTGTT
ACTGTTGGATTTCCTGCAGTTTCTCTTTCTTTTCGTAAACCTTCCTCTCG
TGCGGGCAAGCACATACAATCAATCTGATATGTCCTTGACTTCTTATGCT
CTTCGCTTCATCTCTCTCTCCCTTCCTTACTTCCTTTGCCTCATGTCTAC
TCCACCATCTCTGTCCGTCCCCACTTTCGGGTTTCCCTCGCTCACACCTG
TTGCCATGCAGACGTCTCACTCAAGCTGCCACTGCCGTCAGTTTTCTATC
GTCCGCTCTTTTTTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCT
CCCTCCTTCC
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protein sequence of NO13G01770.1

>NO13G01770.1-protein ID=NO13G01770.1-protein|Name=NO13G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDV
MIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDITNPKSFENLE
HWRTDFLHNASPPDPDNFPFLVLGNKADLESERKVTKQKAMAWTKSKGPK
AIPYFETSAKDATRVEGAFLEAAQLALARVSQEKDDYFPDTINLAQPMPR
RGAESSACC*
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mRNA from alignment at chr13:519001..521268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01770.1 ID=NO13G01770.1|Name=NO13G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp|location=Sequence derived from alignment at chr13:519001..521268+ (Nannochloropsis oceanica)
ACAGCTTTGTACGTGTACGACTGACACATAAACAAACGCCACACCCACGT
GAAGGAAAGCATGGCGCATCGGAAGAAAGTACTGTTTAAGTACATAATCC
TGGGAGACTCGGGGTAAGTATATCGTGAGAGGAGGACAGGTGGGAGGAGC
TCGAATCCAGTGTAGGCCGGTTGTGCACTCCTTCTATGCACACCCGTACA
GCTTGCTTGCATGGGGCGTGAGTAGGAAAGCTGGAATTTTATTTATGACC
TCACTCTGTCAACTTACGACTTAACACCGGTTTCCTCCCTCTTTTTTTCC
TCCCTTCTCTCGTTGCGCATAGGGTGGGTAAGACATGCCTGATGAACCAG
TACGTGCAAAAGCGCTTCGACAAGACATACAAAGCCACCATCGGGGCGGA
TTTCCTGACCAAAGACGTGATGATAGATGATAAGCTCGTCACTTTGCAGG
TACGTCGCGGCGTTATCAAGTTTGTAAGAATTGGGGGAAGTGTCTTGGGT
TTCGTGTCGCGAAGGATGAGACGAAGCTTGGCTTGTGCAGAAAAAGCAAC
AGTACAGGATCCATTTTCCCCTCCTTTCTTTCTGCTCAAATTATCGTCTT
TTATCCTTCCAAATCCCTCAATGGTCATTTCACTGACGGGGTAGATCTGG
GACACGGCCGGGCAAGAGAAATTCCAGTCGCTGGGCCAGGCGTTTTACCG
GGGCGCGGACGTATGCATGCTCGTCTATGACATCACTAACCCCAAGGTAC
GGTAGAGGAAGAGGGGGGTAAGGAGGCAGGAGAGGATGGGATAAAGACAG
ATGTACTGGCAAAACGCGCAGGCGCTTTCTTCTAGGGAACAGAAGTGATG
AATCTCAACCATTCTACCTCCCCTCCTCTTCCCTTTCCCCCTCCCTCCCT
CCTCCCTCACTCCCTCCTCTTCTAGTCTTTTGAAAATCTGGAGCACTGGC
GTACGGACTTCCTCCACAACGCCTCCCCACCCGACCCAGACAATTTCCCT
TTCCTTGTGCTGGGAAATAAGGCTGATTTGGAATCAGAACGGAAGGTGAC
CAAGCAGAAGGCAATGGCGTGGACCAAAAGCAAGGGCCCGAAGGCCATCC
CTTACTTCGAGACGAGTGCCAAGGATGCAACTAGGGTAGAAGGCGCCTTC
CTGGAGGCGGCCCAGTTGGCGTTGGCGCGGGTGTCTCAGGAGAAGGATGA
GTGAGTGGAGAGGGAAATGAAAAAAAGAGGGAGGGAGGGAGGGAGTGCGG
AAGGAGAAGTGCGCGTCAACATACCCGAATGCTTCAGAACGAATACTTCG
GCCTGCATTTTGACTCACCTACTCTTCGCATCATCTCCCTTTCTACTCTC
TCCTTCCTCCATCTCACGTAAACAGCTACTTCCCCGATACCATCAACCTC
GCCCAGCCCATGCCGAGGAGGGGCGCCGAGTCCTCCGCCTGCTGTTAGAG
GGAGGGAGGGCGGATCGACAGGAAGGATGGGACGAGAGAATGATTTTGGA
TGTATAGCGAAATAGTACCAGTAAAGAGCAGCAGCAGCAACAACAGCAAC
AACAACAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGTTGCAGGGGCGT
GCAGAGTAAGAGAAAATGTCGGGAGGGTAGGAGGGAGGGAGAGAGGAGGG
AGGATAGGAGACACTGGATGAGCAAGGAACCAAAGGTGGCTCGGCGGGTG
ATCAATCAGCAAGTGGAGGGGAGACGACAGGAGCGGTCTTCTGCTTGCTG
TTCTTCTTGTTGCTCTCGTTCGTCTTCTTCTTCTTTTTCTTCTTCTTTTT
CTTCTTCTTTTTCTTCTTCTTCTTTTTCTTCTTCTTCTTGTTCTTCTTCT
TCTTCTTCTTCTTTATTATATGTTTGCTTGTCATTGTCGCCGTCACTTTC
TGAGTAAGGTGGACTCCCTCGCCATCTCTTCCCTTGCGTATCCGTCGGCC
GTTCTGTTACTGTTGGATTTCCTGCAGTTTCTCTTTCTTTTCGTAAACCT
TCCTCTCGTGCGGGCAAGCACATACAATCAATCTGATATGTCCTTGACTT
CTTATGCTCTTCGCTTCATCTCTCTCTCCCTTCCTTACTTCCTTTGCCTC
ATGTCTACTCCACCATCTCTGTCCGTCCCCACTTTCGGGTTTCCCTCGCT
CACACCTGTTGCCATGCAGACGTCTCACTCAAGCTGCCACTGCCGTCAGT
TTTCTATCGTCCGCTCTTTTTTCCCTCCTTCCCTCCCTCCTTCCCTCCCT
CCTTCCCTCCCTCCTTCC
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Coding sequence (CDS) from alignment at chr13:519001..521268+

>NO13G01770.1 ID=NO13G01770.1|Name=NO13G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr13:519001..521268+ (Nannochloropsis oceanica)
ATGGCGCATCGGAAGAAAGTACTGTTTAAGTACATAATCCTGGGAGACTC
GGGGGTGGGTAAGACATGCCTGATGAACCAGTACGTGCAAAAGCGCTTCG
ACAAGACATACAAAGCCACCATCGGGGCGGATTTCCTGACCAAAGACGTG
ATGATAGATGATAAGCTCGTCACTTTGCAGATCTGGGACACGGCCGGGCA
AGAGAAATTCCAGTCGCTGGGCCAGGCGTTTTACCGGGGCGCGGACGTAT
GCATGCTCGTCTATGACATCACTAACCCCAAGTCTTTTGAAAATCTGGAG
CACTGGCGTACGGACTTCCTCCACAACGCCTCCCCACCCGACCCAGACAA
TTTCCCTTTCCTTGTGCTGGGAAATAAGGCTGATTTGGAATCAGAACGGA
AGGTGACCAAGCAGAAGGCAATGGCGTGGACCAAAAGCAAGGGCCCGAAG
GCCATCCCTTACTTCGAGACGAGTGCCAAGGATGCAACTAGGGTAGAAGG
CGCCTTCCTGGAGGCGGCCCAGTTGGCGTTGGCGCGGGTGTCTCAGGAGA
AGGATGACTACTTCCCCGATACCATCAACCTCGCCCAGCCCATGCCGAGG
AGGGGCGCCGAGTCCTCCGCCTGCTGTTAG
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Synonyms
Publications