NO13G01760.2, NO13G01760.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01760.2
Unique NameNO13G01760.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1927
Alignment locationchr13:515982..518724 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:515982..518724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01760.2 vs.
Match: EWM21843.1 (Thioredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 686.0 bits (1769), Expect = 6.500e-194
Identity = 317/381 (83.20%), Postives = 353/381 (92.65%), Query Frame = 0 
Query:    1 MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLRPSTKLRS 382
            MLDLPCR+AVVDVLDVLGTNRMN++KNIEKWNLDE GRRR+FQGRNREER ILHD+HH  LEVLLQNGEHA+PL ADSFDEY+++NEFTFVSFYAPWC+WCQRLAPTWEAFAEHVE   IP+KVAK+DCVTH QLC+DQKVHAFPTLR+FNRA PLPPDYNTDRT+ AL S+VTR+L VEEK+K+WPERD+EYVEHPGCMLSGHLLVNRVPGNFHIEARS  HNLNA  TNLSHVVNHLSFGPLY  +VL+RLE+FSSEFYVSN+LDGR FVL+E HKAHHHY+KVVGTLYEVP RWG+ DM TYQMLPETS+M+Y +D+VPEAKFSYE+SPMAVIVK+TGRRWYEF TSL GILGGTFTVVGLLDSTLHRLL+PS+ L+S
Sbjct:   77 MLDLPCRYAVVDVLDVLGTNRMNVSKNIEKWNLDEAGRRRYFQGRNREERSILHDEHHGALEVLLQNGEHAVPLAADSFDEYLESNEFTFVSFYAPWCIWCQRLAPTWEAFAEHVEEAQIPVKVAKIDCVTHAQLCRDQKVHAFPTLRMFNRARPLPPDYNTDRTLVALTSFVTRKLAVEEKKKSWPERDQEYVEHPGCMLSGHLLVNRVPGNFHIEARSAVHNLNAAMTNLSHVVNHLSFGPLYDSQVLSRLERFSSEFYVSNALDGRDFVLEEPHKAHHHYLKVVGTLYEVPMRWGRADMLTYQMLPETSLMTYGLDEVPEAKFSYEVSPMAVIVKKTGRRWYEFVTSLCGILGGTFTVVGLLDSTLHRLLKPSSNLQS 457
The following BLAST results are available for this feature:
BLAST of NO13G01760.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21843.16.500e-19483.20Thioredoxin domain protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01760NO13G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01760.2NO13G01760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01760.2.cds1NO13G01760.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01760.2.cds2NO13G01760.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01760.2.cds3NO13G01760.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01760.2 ID=NO13G01760.2|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp
ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG
CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA
CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC
GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG
ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT
GGGCTCTTCTCCATCGTGGCGGGGGTATTCATGGCCATTCTTTGTGTTGT
GGAGATTATCAGCTTCATGTCGCACACTACCGAGACCATGGTGGTCCTTG
ATCAAAGCCACGACCAAATGGTACGTCTACGCCCGCCCCTCCTTCCTTTC
CTCCCTCCATCCCTACTCCTCTTACTCGCTTGGATTGTCACGACAGAGCA
TGCATTCTCAATTCTGCATGACCAGCCACGGTGCCCTCCCTTTTGCGTGT
CCTAGGTGGGGTTAATCCTTGCTGCTCAATCCTCGCCTCCCTCCCTCCTT
CCGTCCCTGCATAGATTCGGATAAATTTCAATATCACCATGCTCGATCTT
CCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTTGGGTACCAACCG
CATGAACATCACCAAGAACATTGAAAAATGGAACCTTGATGAGGAAGGGC
GGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGCGAAATCCTCCAC
GATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAATGGGGAGCATGC
TATCCCGCTTACCGCCGACTCCTTCGACGAATACATGCAGGCAAATGAGT
TTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGGTGCCAGCGCCTG
GCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGCCGAAAGCATTCC
AATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACACAGTTGTGTAAAG
ACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTCAACAGAGCGTCG
CCGTTGCCACCCGATTATAACACGGACCGGACCGTGGCGGCGCTGGCCAG
CTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGAAAAATTGGCCGG
AGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATGCTCTCGGGCCAC
TTGCTCGTGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAA
GGCCCATAACCTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACC
ACCTCTCTTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAA
AAATTTTCGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTT
TGTCCTGGACGAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCG
GGACATTGTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACC
TATCAGATGCTGCCGGAGACGTCTGTCATGTCCTACGCCGTGGACGATGT
GCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCCATGGCCGTGATTGTCA
AGAGGACCGGCCGCCGATGGTATGAATTTGGCACCTCTCTTTTTGGTATC
TTGGGAGGTACTTTCACCGTTGTGGGCTTATTGGACTCGACGTTGCATCG
GCTTCTCAGGCCATCGACGAAACTAAGGTCTTAGGGAGGGACAGAAGATG
TGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGTGCAAGAGATAAAGACA
GTTTAGGACAGATGAGCTACGCAACAGCAGCAGTAGCAACACGCAATTAA
AAAACCAAAACAGCAGCGACAACGAAAAAGCACCAATTCGTCAATGGAAA
TGTACGGGAAAACAAGTCGAATGCGCG
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protein sequence of NO13G01760.2

>NO13G01760.2-protein ID=NO13G01760.2-protein|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREER
EILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVW
CQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLF
NRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCM
LSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVL
TRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKE
DMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTS
LFGILGGTFTVVGLLDSTLHRLLRPSTKLRS*
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mRNA from alignment at chr13:515982..518724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01760.2 ID=NO13G01760.2|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at chr13:515982..518724+ (Nannochloropsis oceanica)
ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG
CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA
CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC
GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG
ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT
GGGCTCTTCTCCATCGTGGCGGGGTAAGTGCGGGGGCAGAGTAGATGGGG
CTGAAGTGTGGAGCACCAACCGCGGTCGTAGTGCTCTCACGCTGGAAATT
GGTTTCAGAGACTCAATCTCATTCTCATTTAATAGGGTATTCATGGCCAT
TCTTTGTGTTGTGGAGATTATCAGCTTCATGTCGCACACTACCGAGACCA
TGGTGGTCCTTGATCAAAGCCACGACCAAATGGTACGTCTACGCCCGCCC
CTCCTTCCTTTCCTCCCTCCATCCCTACTCCTCTTACTCGCTTGGATTGT
CACGACAGAGCATGCATTCTCAATTCTGCATGACCAGCCACGGTGCCCTC
CCTTTTGCGTGTCCTAGGTGGGGTTAATCCTTGCTGCTCAATCCTCGCCT
CCCTCCCTCCTTCCGTCCCTGCATAGATTCGGATAAATTTCAATATCACC
ATGCTCGATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTT
GGGTACCAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTG
ATGAGGAAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGC
GAAATCCTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAA
TGGGGAGCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGC
AGGCAAATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGG
TGCCAGCGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGC
CGAAAGCATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACAC
AGTTGTGTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTC
AACAGAGCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGC
GGCGCTGGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGA
AAAATTGGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATG
GTACGGTGAGGGAGGGATTGGGGTAGGGAGGGAAGGAGGGCGGGTGGAGG
TTGCATATCCATTCGTTACCGCATTGCGCATCCATTTACCCGCAGAGGCT
TCACAGTGGAAAAGGCAGGTCGGTAGGATGTGTTTGCTACCGCATAAGGT
GTATCACCAATCATTTCGTAAAGACAAGACCATCTCATCCCTCCGTCCCG
TCCTCCCTCCCTTCCTCTTTGCCTCCCTCAGCTCTCGGGCCACTTGCTCG
TGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAAGGCCCAT
AACCTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACCACCTCTC
TTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAAAAATTTT
CGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTTTGTCCTG
GACGAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCGGGACATT
GTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACCTATCAGA
TGCTGCCGGAGGTAAGGAGGAAGGAAGGGAGGGAGGGAGGGCAAACAGAG
TGGAGAATCATATTTGACTAATGTTTTGACGTAACAAAAGGGGCCAAGCA
TTTCACACCAATGGATGTATTATCACCCTATCACCAAATGGCTGTGGATT
AAGAGTGGATCCCCAAGACGGCGTTTGTATGTAAATATGGAAATTCGAAT
ATATCGAGCCACAGCCCCGGAATGTTTTTCAAGCCGAACGGTGCTCTGGC
ACATTCTAGTTGTCCATATTTACACACAATTGCACTCTTGGGGATCGACA
CCTCATCTACAACTATTTGGTGATAGGGTGATAATACATCCACTACTTGA
CTCCTTTCATTACGTCCAAACATGAGTCAATGAGGGTGATGGCGATCGGC
TTTTTCTTTCGCGACGTAATTCTCGATAATTTATTCTTACATTCCTTCCA
CCCCCTTCCCCTTAAATCTCAAATAAATGCATAGACGTCTGTCATGTCCT
ACGCCGTGGACGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCC
ATGGCCGTGATTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCAC
CTCTCTTTTTGGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGG
ACTCGACGTTGCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAG
GGAGGGACAGAAGATGTGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGT
GCAAGAGATAAAGACAGTTTAGGACAGATGAGCTACGCAACAGCAGCAGT
AGCAACACGCAATTAAAAAACCAAAACAGCAGCGACAACGAAAAAGCACC
AATTCGTCAATGGAAATGTACGGGAAAACAAGTCGAATGCGCG
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Coding sequence (CDS) from alignment at chr13:515982..518724+

>NO13G01760.2 ID=NO13G01760.2|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr13:515982..518724+ (Nannochloropsis oceanica)
ATGCTCGATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTT
GGGTACCAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTG
ATGAGGAAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGC
GAAATCCTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAA
TGGGGAGCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGC
AGGCAAATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGG
TGCCAGCGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGC
CGAAAGCATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACAC
AGTTGTGTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTC
AACAGAGCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGC
GGCGCTGGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGA
AAAATTGGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATG
CTCTCGGGCCACTTGCTCGTGAACCGCGTTCCCGGGAATTTCCACATCGA
AGCAAGAAGCAAGGCCCATAACCTCAACGCTGTCTCGACAAACTTGTCAC
ACGTCGTCAACCACCTCTCTTTCGGGCCTTTGTATCAAGACGAAGTCTTG
ACTCGATTAGAAAAATTTTCGTCGGAGTTTTACGTCTCCAATTCTTTGGA
TGGACGGATGTTTGTCCTGGACGAGTACCACAAGGCACATCACCACTATG
TTAAGGTGGTCGGGACATTGTATGAGGTTCCGCAACGCTGGGGGAAGGAA
GACATGTTCACCTATCAGATGCTGCCGGAGACGTCTGTCATGTCCTACGC
CGTGGACGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCCATGG
CCGTGATTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCACCTCT
CTTTTTGGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGGACTC
GACGTTGCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAG
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Synonyms
Publications