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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:515982..518724 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01760.2 vs.
Match: EWM21843.1 (Thioredoxin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 686.0 bits (1769), Expect = 6.500e-194 Identity = 317/381 (83.20%), Postives = 353/381 (92.65%), Query Frame = 0
Query: 1 MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLRPSTKLRS 382
MLDLPCR+AVVDVLDVLGTNRMN++KNIEKWNLDE GRRR+FQGRNREER ILHD+HH LEVLLQNGEHA+PL ADSFDEY+++NEFTFVSFYAPWC+WCQRLAPTWEAFAEHVE IP+KVAK+DCVTH QLC+DQKVHAFPTLR+FNRA PLPPDYNTDRT+ AL S+VTR+L VEEK+K+WPERD+EYVEHPGCMLSGHLLVNRVPGNFHIEARS HNLNA TNLSHVVNHLSFGPLY +VL+RLE+FSSEFYVSN+LDGR FVL+E HKAHHHY+KVVGTLYEVP RWG+ DM TYQMLPETS+M+Y +D+VPEAKFSYE+SPMAVIVK+TGRRWYEF TSL GILGGTFTVVGLLDSTLHRLL+PS+ L+S
Sbjct: 77 MLDLPCRYAVVDVLDVLGTNRMNVSKNIEKWNLDEAGRRRYFQGRNREERSILHDEHHGALEVLLQNGEHAVPLAADSFDEYLESNEFTFVSFYAPWCIWCQRLAPTWEAFAEHVEEAQIPVKVAKIDCVTHAQLCRDQKVHAFPTLRMFNRARPLPPDYNTDRTLVALTSFVTRKLAVEEKKKSWPERDQEYVEHPGCMLSGHLLVNRVPGNFHIEARSAVHNLNAAMTNLSHVVNHLSFGPLYDSQVLSRLERFSSEFYVSNALDGRDFVLEEPHKAHHHYLKVVGTLYEVPMRWGRADMLTYQMLPETSLMTYGLDEVPEAKFSYEVSPMAVIVKKTGRRWYEFVTSLCGILGGTFTVVGLLDSTLHRLLKPSSNLQS 457
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01760.2 ID=NO13G01760.2|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT GGGCTCTTCTCCATCGTGGCGGGGGTATTCATGGCCATTCTTTGTGTTGT GGAGATTATCAGCTTCATGTCGCACACTACCGAGACCATGGTGGTCCTTG ATCAAAGCCACGACCAAATGGTACGTCTACGCCCGCCCCTCCTTCCTTTC CTCCCTCCATCCCTACTCCTCTTACTCGCTTGGATTGTCACGACAGAGCA TGCATTCTCAATTCTGCATGACCAGCCACGGTGCCCTCCCTTTTGCGTGT CCTAGGTGGGGTTAATCCTTGCTGCTCAATCCTCGCCTCCCTCCCTCCTT CCGTCCCTGCATAGATTCGGATAAATTTCAATATCACCATGCTCGATCTT CCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTTGGGTACCAACCG CATGAACATCACCAAGAACATTGAAAAATGGAACCTTGATGAGGAAGGGC GGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGCGAAATCCTCCAC GATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAATGGGGAGCATGC TATCCCGCTTACCGCCGACTCCTTCGACGAATACATGCAGGCAAATGAGT TTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGGTGCCAGCGCCTG GCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGCCGAAAGCATTCC AATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACACAGTTGTGTAAAG ACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTCAACAGAGCGTCG CCGTTGCCACCCGATTATAACACGGACCGGACCGTGGCGGCGCTGGCCAG CTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGAAAAATTGGCCGG AGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATGCTCTCGGGCCAC TTGCTCGTGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAA GGCCCATAACCTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACC ACCTCTCTTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAA AAATTTTCGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTT TGTCCTGGACGAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCG GGACATTGTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACC TATCAGATGCTGCCGGAGACGTCTGTCATGTCCTACGCCGTGGACGATGT GCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCCATGGCCGTGATTGTCA AGAGGACCGGCCGCCGATGGTATGAATTTGGCACCTCTCTTTTTGGTATC TTGGGAGGTACTTTCACCGTTGTGGGCTTATTGGACTCGACGTTGCATCG GCTTCTCAGGCCATCGACGAAACTAAGGTCTTAGGGAGGGACAGAAGATG TGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGTGCAAGAGATAAAGACA GTTTAGGACAGATGAGCTACGCAACAGCAGCAGTAGCAACACGCAATTAA AAAACCAAAACAGCAGCGACAACGAAAAAGCACCAATTCGTCAATGGAAA TGTACGGGAAAACAAGTCGAATGCGCG back to topprotein sequence of NO13G01760.2 >NO13G01760.2-protein ID=NO13G01760.2-protein|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREER EILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVW CQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLF NRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCM LSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVL TRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKE DMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTS LFGILGGTFTVVGLLDSTLHRLLRPSTKLRS* back to topmRNA from alignment at chr13:515982..518724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01760.2 ID=NO13G01760.2|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at chr13:515982..518724+ (Nannochloropsis oceanica) ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG
CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA
CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC
GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG
ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT
GGGCTCTTCTCCATCGTGGCGGGGTAAGTGCGGGGGCAGAGTAGATGGGG
CTGAAGTGTGGAGCACCAACCGCGGTCGTAGTGCTCTCACGCTGGAAATT
GGTTTCAGAGACTCAATCTCATTCTCATTTAATAGGGTATTCATGGCCAT
TCTTTGTGTTGTGGAGATTATCAGCTTCATGTCGCACACTACCGAGACCA
TGGTGGTCCTTGATCAAAGCCACGACCAAATGGTACGTCTACGCCCGCCC
CTCCTTCCTTTCCTCCCTCCATCCCTACTCCTCTTACTCGCTTGGATTGT
CACGACAGAGCATGCATTCTCAATTCTGCATGACCAGCCACGGTGCCCTC
CCTTTTGCGTGTCCTAGGTGGGGTTAATCCTTGCTGCTCAATCCTCGCCT
CCCTCCCTCCTTCCGTCCCTGCATAGATTCGGATAAATTTCAATATCACC
ATGCTCGATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTT
GGGTACCAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTG
ATGAGGAAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGC
GAAATCCTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAA
TGGGGAGCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGC
AGGCAAATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGG
TGCCAGCGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGC
CGAAAGCATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACAC
AGTTGTGTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTC
AACAGAGCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGC
GGCGCTGGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGA
AAAATTGGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATG
GTACGGTGAGGGAGGGATTGGGGTAGGGAGGGAAGGAGGGCGGGTGGAGG
TTGCATATCCATTCGTTACCGCATTGCGCATCCATTTACCCGCAGAGGCT
TCACAGTGGAAAAGGCAGGTCGGTAGGATGTGTTTGCTACCGCATAAGGT
GTATCACCAATCATTTCGTAAAGACAAGACCATCTCATCCCTCCGTCCCG
TCCTCCCTCCCTTCCTCTTTGCCTCCCTCAGCTCTCGGGCCACTTGCTCG
TGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAAGGCCCAT
AACCTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACCACCTCTC
TTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAAAAATTTT
CGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTTTGTCCTG
GACGAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCGGGACATT
GTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACCTATCAGA
TGCTGCCGGAGGTAAGGAGGAAGGAAGGGAGGGAGGGAGGGCAAACAGAG
TGGAGAATCATATTTGACTAATGTTTTGACGTAACAAAAGGGGCCAAGCA
TTTCACACCAATGGATGTATTATCACCCTATCACCAAATGGCTGTGGATT
AAGAGTGGATCCCCAAGACGGCGTTTGTATGTAAATATGGAAATTCGAAT
ATATCGAGCCACAGCCCCGGAATGTTTTTCAAGCCGAACGGTGCTCTGGC
ACATTCTAGTTGTCCATATTTACACACAATTGCACTCTTGGGGATCGACA
CCTCATCTACAACTATTTGGTGATAGGGTGATAATACATCCACTACTTGA
CTCCTTTCATTACGTCCAAACATGAGTCAATGAGGGTGATGGCGATCGGC
TTTTTCTTTCGCGACGTAATTCTCGATAATTTATTCTTACATTCCTTCCA
CCCCCTTCCCCTTAAATCTCAAATAAATGCATAGACGTCTGTCATGTCCT
ACGCCGTGGACGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCC
ATGGCCGTGATTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCAC
CTCTCTTTTTGGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGG
ACTCGACGTTGCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAG
GGAGGGACAGAAGATGTGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGT
GCAAGAGATAAAGACAGTTTAGGACAGATGAGCTACGCAACAGCAGCAGT
AGCAACACGCAATTAAAAAACCAAAACAGCAGCGACAACGAAAAAGCACC
AATTCGTCAATGGAAATGTACGGGAAAACAAGTCGAATGCGCG back to topCoding sequence (CDS) from alignment at chr13:515982..518724+ >NO13G01760.2 ID=NO13G01760.2|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr13:515982..518724+ (Nannochloropsis oceanica) ATGCTCGATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTT GGGTACCAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTG ATGAGGAAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGC GAAATCCTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAA TGGGGAGCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGC AGGCAAATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGG TGCCAGCGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGC CGAAAGCATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACAC AGTTGTGTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTC AACAGAGCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGC GGCGCTGGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGA AAAATTGGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATG CTCTCGGGCCACTTGCTCGTGAACCGCGTTCCCGGGAATTTCCACATCGA AGCAAGAAGCAAGGCCCATAACCTCAACGCTGTCTCGACAAACTTGTCAC ACGTCGTCAACCACCTCTCTTTCGGGCCTTTGTATCAAGACGAAGTCTTG ACTCGATTAGAAAAATTTTCGTCGGAGTTTTACGTCTCCAATTCTTTGGA TGGACGGATGTTTGTCCTGGACGAGTACCACAAGGCACATCACCACTATG TTAAGGTGGTCGGGACATTGTATGAGGTTCCGCAACGCTGGGGGAAGGAA GACATGTTCACCTATCAGATGCTGCCGGAGACGTCTGTCATGTCCTACGC CGTGGACGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCCATGG CCGTGATTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCACCTCT CTTTTTGGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGGACTC GACGTTGCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAG back to top
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