NO13G01730.1, NO13G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01730.1
Unique NameNO13G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1809
Alignment locationchr13:508298..510466 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:508298..510466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01730.1 vs.
Match: EWM21840.1 (udp-glucose 4-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 670.6 bits (1729), Expect = 2.800e-189
Identity = 320/365 (87.67%), Postives = 342/365 (93.70%), Query Frame = 0 
Query:   10 MALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKAPE 375
            MA +L FF QSQAFAG ILVTGGAGYIGSHTCCELLKAGRRIVVVDNL+NS +DS+ERVKEITGCA GALEFR LDLL+ +GL+ LFKEY+FDACIHFAGLKAVGESVSQP+RYYHNNIVGTLNLLEVM+K+KCKN VFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEE+LRDQH AD +WSILILRYFNPIGAH SGRIGEDPLGIPNNLMPF+AQVCVGRR+ LSVFG+DY TPDGTGVRDYIHVVDLAEGHVAAVDRMMEAR+E GKSLGCVPVNLGTG GVSVLELV AMR ASGKEIP KM +RRPGDVA+LYTDP FANR LKW+ATRGVK+MC+DTWRWQSRNPFGYRKAPE
Sbjct:   26 MAFMLVFFVQSQAFAGHILVTGGAGYIGSHTCCELLKAGRRIVVVDNLVNSCEDSVERVKEITGCASGALEFRNLDLLNLEGLDDLFKEYSFDACIHFAGLKAVGESVSQPLRYYHNNIVGTLNLLEVMNKYKCKNMVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEMLRDQHTADKDWSILILRYFNPIGAHESGRIGEDPLGIPNNLMPFLAQVCVGRREVLSVFGSDYPTPDGTGVRDYIHVVDLAEGHVAAVDRMMEARSECGKSLGCVPVNLGTGRGVSVLELVKAMRDASGKEIPIKMTDRRPGDVAALYTDPAFANRFLKWQATRGVKDMCDDTWRWQSRNPFGYRKAPE 390
The following BLAST results are available for this feature:
BLAST of NO13G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21840.12.800e-18987.67udp-glucose 4-epimerase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01730NO13G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01730.1NO13G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01730.1.cds1NO13G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01730.1.cds2NO13G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01730.1.cds3NO13G01730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01730.1 ID=NO13G01730.1|Name=NO13G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
TCCGCCCATGGTAGCTAGTGCTGTCCGTAAGAGTGTTGGTATGGGTGTTT
AGGCTCCAGAAGCTGCCTCCTGGAAGGCGAGGGGATTATGATAGAGAGCC
AAGACGACAACTTTGTGCAGGGCTTTCTCGCTTGACTTGTACAACAGACA
TGCTACGCATGCAGGCCAAGAAAGAAATCACTCCGTATGCTGCGCAGGTG
TCTGCGGATATGCGAAAGGAGGACAGAGCGTGTGCAACAAAAGGGCACAA
GCAGCAAGCACACGCCTCTCTCGTGAGAGCGGGAGAGGGAGAGAGAGACA
CCGAGACTACTGAAGGCAGCTGATCAAAGCTGATGGCTCCCCTCATGCAT
CAAGCATGTGAACACCCTGCCAACACCTCAAACGAATTTCTGACGAGCCA
AAAACTGACCCAATCCTTTCTGTGCATTTCAAGACAGGTGCGTTTTGGCC
AGGCCGGCAGCCATTATTATTGCATTTCCTCCACACCACCCCAACCGACC
CAACGCAGCATCAACAGCAATCATGGGGTCGACGCGATGTCCCTATTTCA
TGGCCTTGATACTGGCGTTTTTCGCTCAGTCCCAAGCTTTTGCTGGACAA
ATCCTTGTGACAGGCGGAGCGGGCTACATTGGCTCGCACACATGTTGCGA
GCTCCTCAAGGCTGGCCGTCGCATCGTCGTCGTCGACAACCTAATCAACA
GTGTTCAAGACTCATTGGAACGTGTCAAGGAAATTACAGGGTGTGCCCCG
GGGGCGCTTGAATTCCGAGAATTGGACCTACTGGACAAGAAAGGGTTGGA
GGGGCTGTTCAAAGAGTATACGTTTGATGCTTGTATTCATTTTGCGGGCC
TGAAGGCCGTCGGTGAGAGTGTGAGCCAGCCAATGAGGTACTATCATAAT
AACATCGTGGGTACACTGAATTTGTTAGAGGTTATGGATAAGCACAAATG
CAAAAACTTTGTATTCTCTTCCTCCGCCACCGTCTACGGGGATCCCGAAA
AGCTGCCAATCACCGAAGACCAACGCCTGCAAGCCACCAATCCCTACGGC
CGCACCAAGCTCTTCATCGAAGAAATCCTCCGCGACCAGCATAAAGCAGA
CGCAGAATGGTCCATTCTCATCCTGCGGTATTTTAACCCCATCGGCGCTC
ACCCCTCAGGGAGGATAGGCGAAGACCCTTTAGGTATCCCTAATAACCTC
ATGCCTTTTGTCGCACAAGTCTGTGTCGGACGCCGTGATGCCCTCAGTGT
GTTTGGTAATGACTATGCGACCCCAGACGGCACCGGAGTAAGAGATTATA
TTCACGTGGTGGACCTCGCGGAAGGCCACGTGGCTGCTGTGGATAGGATG
ATGGAGGCAAGGGCGGAGGGGGGAAAGAGTCTCGGCTGTGTGCCAGTCAA
CCTGGGGACGGGGGATGGCGTGAGTGTATTGGAGTTGGTGGCTGCTATGA
GGGCGGCAAGTGGGAAGGAAATTCCAACAAAAATGGCTGAGAGGAGGCCG
GGGGATGTGGCGTCTCTGTACACGGACCCCGGTTTTGCGAATCGGCTTCT
GAAATGGAAGGCGACAAGGGGGGTGAAGGAAATGTGTGAGGACACTTGGC
GGTGGCAGAGCCGGAATCCATTTGGGTATCGCAAGGCGCCTGAGGCGATG
GGGACGTCAAAATCGTAATGTGAAGGGATGGGGTAGGAAACATCAGAATT
AGCTTATGACCTGAACTGTGGGGGCCAAAATGAAAGGATCCCTCACAACG
CATGAAGACTCGGAGACAGAAACTGGGGGGAAAAAAGAAATAAAAAGATA
TCAGATGTT
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protein sequence of NO13G01730.1

>NO13G01730.1-protein ID=NO13G01730.1-protein|Name=NO13G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MGSTRCPYFMALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLKAGRR
IVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYT
FDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSS
SATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILI
LRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYAT
PDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGV
SVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRG
VKEMCEDTWRWQSRNPFGYRKAPEAMGTSKS*
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mRNA from alignment at chr13:508298..510466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01730.1 ID=NO13G01730.1|Name=NO13G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr13:508298..510466- (Nannochloropsis oceanica)
TCCGCCCATGGTAGCTAGTGCTGTCCGTAAGAGTGTTGGTATGGGTGTTT
AGGCTCCAGAAGCTGCCTCCTGGAAGGCGAGGGGATTATGATAGAGAGCC
AAGACGACAACTTTGTGCAGGGCTTTCTCGCTTGACTTGTACAACAGACA
TGCTACGCATGCAGGCCAAGAAAGAAATCACTCCGTATGCTGCGCAGGTG
TCTGCGGATATGCGAAAGGAGGACAGAGCGTGTGCAACAAAAGGGCACAA
GCAGCAAGCACACGCCTCTCTCGTGAGAGCGGGAGAGGGAGAGAGAGACA
CCGAGACTACTGAAGGCAGCTGATCAAAGCTGATGGCTCCCCTCATGCAT
CAAGCATGTGAACACCCTGCCAACACCTCAAACGAATTTCTGACGAGCCA
AAAACTGACCCAATCCTTTCTGTGCATTTCAAGACAGGTGCGTTTTGGCC
AGGCCGGCAGCCATTATTATTGCATTTCCTCCACACCACCCCAACCGACC
CAACGCAGCATCAACAGCAATCATGGGGTCGACGCGATGTCCCTATTTCA
TGGCCTTGATACTGGCGTTTTTCGCTCAGTCCCAAGCTTTTGCTGGACAA
ATCCTTGTGACAGGTACGTGTGGCAAGTAGTTGCGCCGTAATGGTTTTTT
TTGTCATCTTCATTTCCTTCCATCCATAGACGGTGACGTACGTCCCTACC
TGTGTGTAGAGCGGACCTCCTTCCCCCTCTCCCTGTCCCACCTTCATCCT
TCTGCCCCTCCCCGCTTGTTCGCCTGGAAATTTAGTACAGTGTTCTAGAG
ACGTCAAATTTATCTCTGTCTCCCCCCGAAAAAAGGCGGAGCGGGCTACA
TTGGCTCGCACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGCATCGTC
GTCGTCGACAACCTAATCAACAGTGTTCAAGACTCATTGGAACGTGTCAA
GGAAATTACAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAATTGGACC
TACTGGACAAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACGTTTGAT
GCTTGTATTCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGTGAGCCA
GCCAATGAGGTACTATCATAATAACATCGTGGGTACACTGAATTTGTTAG
AGGTTATGGATAAGCACAAGTAAGTACTTGTGGAAGGGAAGGAAGGGGAG
GGATGGAGGAAGCAAGGGAAGGGATGAGGCTAATTTAATATATTCGATGA
TTAGTGAACTAGATTCACATACCATCTCGTCTCCCCGCTACTCCTTTCTC
ACCCTAGATGCAAAAACTTTGTATTCTCTTCCTCCGCCACCGTCTACGGG
GATCCCGAAAAGCTGCCAATCACCGAAGACCAACGCCTGCAAGCCACCAA
TCCCTACGGCCGCACCAAGCTCTTCATCGAAGAAATCCTCCGCGACCAGC
ATAAAGCAGACGCAGAATGGTCCATTCTCATCCTGCGGTATTTTAACCCC
ATCGGCGCTCACCCCTCAGGGAGGATAGGCGAAGACCCTTTAGGTATCCC
TAATAACCTCATGCCTTTTGTCGCACAAGTCTGTGTCGGACGCCGTGATG
CCCTCAGTGTGTTTGGTAATGACTATGCGACCCCAGACGGCACCGGAGTA
AGAGATTATATTCACGTGGTGGACCTCGCGGAAGGCCACGTGGCTGCTGT
GGATAGGATGATGGAGGCAAGGGCGGAGGGGGGAAAGAGTCTCGGCTGTG
TGCCAGTCAACCTGGGGACGGGGGATGGCGTGAGTGTATTGGAGTTGGTG
GCTGCTATGAGGGCGGCAAGTGGGAAGGAAATTCCAACAAAAATGGCTGA
GAGGAGGCCGGGGGATGTGGCGTCTCTGTACACGGACCCCGGTTTTGCGA
ATCGGCTTCTGAAATGGAAGGCGACAAGGGGGGTGAAGGAAATGTGTGAG
GACACTTGGCGGTGGCAGAGCCGGAATCCATTTGGGTATCGCAAGGCGCC
TGAGGCGATGGGGACGTCAAAATCGTAATGTGAAGGGATGGGGTAGGAAA
CATCAGAATTAGCTTATGACCTGAACTGTGGGGGCCAAAATGAAAGGATC
CCTCACAACGCATGAAGACTCGGAGACAGAAACTGGGGGGAAAAAAGAAA
TAAAAAGATATCAGATGTT
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Coding sequence (CDS) from alignment at chr13:508298..510466-

>NO13G01730.1 ID=NO13G01730.1|Name=NO13G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr13:508298..510466- (Nannochloropsis oceanica)
ATGGGGTCGACGCGATGTCCCTATTTCATGGCCTTGATACTGGCGTTTTT
CGCTCAGTCCCAAGCTTTTGCTGGACAAATCCTTGTGACAGGCGGAGCGG
GCTACATTGGCTCGCACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGC
ATCGTCGTCGTCGACAACCTAATCAACAGTGTTCAAGACTCATTGGAACG
TGTCAAGGAAATTACAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAAT
TGGACCTACTGGACAAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACG
TTTGATGCTTGTATTCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGT
GAGCCAGCCAATGAGGTACTATCATAATAACATCGTGGGTACACTGAATT
TGTTAGAGGTTATGGATAAGCACAAATGCAAAAACTTTGTATTCTCTTCC
TCCGCCACCGTCTACGGGGATCCCGAAAAGCTGCCAATCACCGAAGACCA
ACGCCTGCAAGCCACCAATCCCTACGGCCGCACCAAGCTCTTCATCGAAG
AAATCCTCCGCGACCAGCATAAAGCAGACGCAGAATGGTCCATTCTCATC
CTGCGGTATTTTAACCCCATCGGCGCTCACCCCTCAGGGAGGATAGGCGA
AGACCCTTTAGGTATCCCTAATAACCTCATGCCTTTTGTCGCACAAGTCT
GTGTCGGACGCCGTGATGCCCTCAGTGTGTTTGGTAATGACTATGCGACC
CCAGACGGCACCGGAGTAAGAGATTATATTCACGTGGTGGACCTCGCGGA
AGGCCACGTGGCTGCTGTGGATAGGATGATGGAGGCAAGGGCGGAGGGGG
GAAAGAGTCTCGGCTGTGTGCCAGTCAACCTGGGGACGGGGGATGGCGTG
AGTGTATTGGAGTTGGTGGCTGCTATGAGGGCGGCAAGTGGGAAGGAAAT
TCCAACAAAAATGGCTGAGAGGAGGCCGGGGGATGTGGCGTCTCTGTACA
CGGACCCCGGTTTTGCGAATCGGCTTCTGAAATGGAAGGCGACAAGGGGG
GTGAAGGAAATGTGTGAGGACACTTGGCGGTGGCAGAGCCGGAATCCATT
TGGGTATCGCAAGGCGCCTGAGGCGATGGGGACGTCAAAATCGTAA
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Synonyms
Publications