NO13G01720.1, NO13G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01720.1
Unique NameNO13G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1487
Alignment locationchr13:506811..508297 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:506811..508297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01720.1 vs.
Match: EWM21829.1 (Nicotinamide N-methyltransferase, putative [Nannochloropsis gaditana])

HSP 1 Score: 360.5 bits (924), Expect = 7.000e-96
Identity = 223/441 (50.57%), Postives = 280/441 (63.49%), Query Frame = 0 
Query:    4 PDENYAE-AENH----MLQVQKLLRQQAPVAEVLRVLKQLP---EWASLTSQERMHHFLLCDPVHDTFPLAPWYRASFIRHLCLELEEAVAKDEEGSGEVIEPIMRELNVLLCQPTLNAEPGELAAYFITFECPVVVPMYVDMDSSSSL-----------HEEPDEQQLLQQRPKILATRIAPKENAVGLKLWEACYVLAEALCSHPKLCRGRDVIELGAGVGLLGLVAAYCLGAASVTMTDVDDKVLLFLRTNVEFNAVATA-SLLAADSLVAVHEEKETKGEEAAAAAVVPLIEVAALDWSRPVEYKALLDRSTQPSSCTSRKDVKERDRIILAADCIYDREVIPAFVDVLAYSLQ--PPTGGSSRKTTVLVASTMRDPETYAYFEEVVREKGLVMDDVTTMLGSQPPDPVSSHAPWTFYCPNRAAVRICSFRLRSDED 423
            PDE   E AE H    +L  ++LLRQ APV E+L+ +K+     +WAS   Q+ +H  LL DPV D FPLAP YRA+FIR LC ELEEAV ++EEG  EVIEPI RELNVLL QP  +  PGE A +++TFECPV  P++    +   L           +    +Q   +   +ILA R+APKENAVGLKLWEACYVL+E L  +P+LC GRDV+ELGAGVGLLGLVAAYC GAA VT+TDVDDKVLLFLR NVE N    A + LA++  +A             A A+VP I+VA LDW+R  E +AL D   +      +  +  R R ILAADC+YDR++IPAFVD L  +L+  PP      +T VLVAST+R+P T+A F+ +V  KGLVM+DVT  L     D   + +P  FYCPNRAAVR+    L S  +
Sbjct:   13 PDEAGRERAEEHIDSLLLPARRLLRQHAPVREILKEIKEHVSPLDWASWHVQKCIHRMLLSDPVQDIFPLAPQYRATFIRRLCDELEEAVRRNEEG--EVIEPIFRELNVLLNQPARSFAPGEGATHYVTFECPVCKPVHSSFIAHDGLDIPSFQKVKHANNRDGQQDEKESNTRILAIRMAPKENAVGLKLWEACYVLSETLLRNPELCYGRDVVELGAGVGLLGLVAAYCAGAAHVTLTDVDDKVLLFLRANVEANVTTGALATLASNGHLAPRR----------AEALVPSIDVAPLDWTRSREAEALFDPGAR-----RKGHLGMRSRTILAADCVYDRDLIPAFVDTLTIALRALPP----PHQTLVLVASTLRNPATFACFQGLVATKGLVMEDVTDSLA----DRNGNASP--FYCPNRAAVRLTRISLPSGSE 426
The following BLAST results are available for this feature:
BLAST of NO13G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21829.17.000e-9650.57Nicotinamide N-methyltransferase, putative [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01720NO13G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01720.1NO13G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01720.1.cds1NO13G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01720.1 ID=NO13G01720.1|Name=NO13G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp
TAAGTGCGACAGAGAAATGTAGTGAACGTTAAGCTTTCGAATTAAGGAAC
GTGTCATACTCGGAGTGGGGAGGTCTTGGGAACTTAACCGAGACGGACGG
CTCTGATTTGTGCTTCACCTGATTCTCATCCTTCCCTCTCACGATGCACC
ACACAGTTAACCAATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAGA
ACCACATGCTTCAAGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGCT
GAAGTTCTCCGCGTGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGTC
CCAAGAACGCATGCACCATTTTTTGCTCTGCGATCCGGTGCATGACACCT
TTCCCTTGGCTCCTTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCTC
GAATTGGAAGAGGCGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGAT
CGAGCCCATCATGCGTGAATTGAATGTGCTGCTATGCCAACCCACACTCA
ATGCTGAGCCCGGAGAATTGGCGGCGTATTTTATAACATTTGAATGCCCT
GTTGTAGTGCCGATGTACGTGGATATGGACTCTTCATCGAGTCTACACGA
GGAACCCGACGAGCAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCAA
CCCGCATCGCCCCCAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGCT
TGCTACGTGCTTGCTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTGG
GCGAGATGTCATTGAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTGG
CTGCTTATTGCTTGGGCGCGGCAAGCGTCACTATGACAGATGTAGATGAC
AAGGTCCTGTTGTTTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGAC
TGCTTCACTTCTCGCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAGG
AGACGAAGGGCGAGGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGAG
GTGGCTGCTTTAGACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGGA
CCGTTCTACTCAACCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAAA
GAGATCGAATTATTCTTGCAGCTGACTGTATTTACGATCGCGAAGTCATC
CCTGCCTTCGTCGACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTGG
CAGCAGCAGGAAAACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCCG
AGACCTACGCATATTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGATG
GACGATGTCACCACGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCTC
CCACGCGCCGTGGACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATAT
GTAGCTTTAGGTTACGTTCTGATGAGGATGAGGATAGCGACAAGTGAATC
AAGAGAGTGTAATTTACATGAGACGCTGATCCTCGTT
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protein sequence of NO13G01720.1

>NO13G01720.1-protein ID=NO13G01720.1-protein|Name=NO13G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MATPDENYAEAENHMLQVQKLLRQQAPVAEVLRVLKQLPEWASLTSQERM
HHFLLCDPVHDTFPLAPWYRASFIRHLCLELEEAVAKDEEGSGEVIEPIM
RELNVLLCQPTLNAEPGELAAYFITFECPVVVPMYVDMDSSSSLHEEPDE
QQLLQQRPKILATRIAPKENAVGLKLWEACYVLAEALCSHPKLCRGRDVI
ELGAGVGLLGLVAAYCLGAASVTMTDVDDKVLLFLRTNVEFNAVATASLL
AADSLVAVHEEKETKGEEAAAAAVVPLIEVAALDWSRPVEYKALLDRSTQ
PSSCTSRKDVKERDRIILAADCIYDREVIPAFVDVLAYSLQPPTGGSSRK
TTVLVASTMRDPETYAYFEEVVREKGLVMDDVTTMLGSQPPDPVSSHAPW
TFYCPNRAAVRICSFRLRSDEDEDSDK*
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mRNA from alignment at chr13:506811..508297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01720.1 ID=NO13G01720.1|Name=NO13G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at chr13:506811..508297- (Nannochloropsis oceanica)
TAAGTGCGACAGAGAAATGTAGTGAACGTTAAGCTTTCGAATTAAGGAAC
GTGTCATACTCGGAGTGGGGAGGTCTTGGGAACTTAACCGAGACGGACGG
CTCTGATTTGTGCTTCACCTGATTCTCATCCTTCCCTCTCACGATGCACC
ACACAGTTAACCAATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAGA
ACCACATGCTTCAAGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGCT
GAAGTTCTCCGCGTGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGTC
CCAAGAACGCATGCACCATTTTTTGCTCTGCGATCCGGTGCATGACACCT
TTCCCTTGGCTCCTTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCTC
GAATTGGAAGAGGCGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGAT
CGAGCCCATCATGCGTGAATTGAATGTGCTGCTATGCCAACCCACACTCA
ATGCTGAGCCCGGAGAATTGGCGGCGTATTTTATAACATTTGAATGCCCT
GTTGTAGTGCCGATGTACGTGGATATGGACTCTTCATCGAGTCTACACGA
GGAACCCGACGAGCAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCAA
CCCGCATCGCCCCCAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGCT
TGCTACGTGCTTGCTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTGG
GCGAGATGTCATTGAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTGG
CTGCTTATTGCTTGGGCGCGGCAAGCGTCACTATGACAGATGTAGATGAC
AAGGTCCTGTTGTTTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGAC
TGCTTCACTTCTCGCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAGG
AGACGAAGGGCGAGGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGAG
GTGGCTGCTTTAGACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGGA
CCGTTCTACTCAACCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAAA
GAGATCGAATTATTCTTGCAGCTGACTGTATTTACGATCGCGAAGTCATC
CCTGCCTTCGTCGACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTGG
CAGCAGCAGGAAAACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCCG
AGACCTACGCATATTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGATG
GACGATGTCACCACGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCTC
CCACGCGCCGTGGACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATAT
GTAGCTTTAGGTTACGTTCTGATGAGGATGAGGATAGCGACAAGTGAATC
AAGAGAGTGTAATTTACATGAGACGCTGATCCTCGTT
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Coding sequence (CDS) from alignment at chr13:506811..508297-

>NO13G01720.1 ID=NO13G01720.1|Name=NO13G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr13:506811..508297- (Nannochloropsis oceanica)
ATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAGAACCACATGCTTCA
AGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGCTGAAGTTCTCCGCG
TGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGTCCCAAGAACGCATG
CACCATTTTTTGCTCTGCGATCCGGTGCATGACACCTTTCCCTTGGCTCC
TTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCTCGAATTGGAAGAGG
CGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGATCGAGCCCATCATG
CGTGAATTGAATGTGCTGCTATGCCAACCCACACTCAATGCTGAGCCCGG
AGAATTGGCGGCGTATTTTATAACATTTGAATGCCCTGTTGTAGTGCCGA
TGTACGTGGATATGGACTCTTCATCGAGTCTACACGAGGAACCCGACGAG
CAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCAACCCGCATCGCCCC
CAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGCTTGCTACGTGCTTG
CTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTGGGCGAGATGTCATT
GAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTGGCTGCTTATTGCTT
GGGCGCGGCAAGCGTCACTATGACAGATGTAGATGACAAGGTCCTGTTGT
TTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGACTGCTTCACTTCTC
GCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAGGAGACGAAGGGCGA
GGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGAGGTGGCTGCTTTAG
ACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGGACCGTTCTACTCAA
CCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAAAGAGATCGAATTAT
TCTTGCAGCTGACTGTATTTACGATCGCGAAGTCATCCCTGCCTTCGTCG
ACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTGGCAGCAGCAGGAAA
ACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCCGAGACCTACGCATA
TTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGATGGACGATGTCACCA
CGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCTCCCACGCGCCGTGG
ACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATATGTAGCTTTAGGTT
ACGTTCTGATGAGGATGAGGATAGCGACAAGTGA
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Synonyms
Publications