NO13G01590.1, NO13G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01590.1
Unique NameNO13G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1344
Alignment locationchr13:470066..471409 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:470066..471409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01590.1 vs.
Match: XP_005852438.1 (RNA-binding protein Musashi, partial [Nannochloropsis gaditana CCMP526]; EKU23394.1 RNA-binding protein Musashi, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 371.3 bits (952), Expect = 4.200e-99
Identity = 189/235 (80.43%), Postives = 204/235 (86.81%), Query Frame = 0 
Query:    8 EQQSSGYGETGNGSSATPPQREGAGTGNAGGAQGEFNNPNKIFVGGVAWHTTEEGLSNYFGKYGELVDVVLMRDRNTGGPRGFGFVSFATPEALEAAVAEAHILDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQKQFQDIKKVFVGGLSPEVTEEAFRAYFDTFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLAQPHEMDGRPMDVKRAEPKIPDGGREGGYRGGGG 243
            +QQ +   +  NG    PP R G      G   GE+N PNKIFVGGVAWHTTEEGLS+YFGKYGEL DVVLMRD+NTGGPRGFGFVSFATP A+EAAV+EAH+LDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQ+QFQDIKKVFVGGLSP+VTEEAFRAYFD FGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVL+Q H+M+GRPMDVKRAEPK+PD G  GGY  GGG
Sbjct:   15 QQQQAQQQDYENGG---PPPRRG------GDGHGEYNQPNKIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDIKKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDMEGRPMDVKRAEPKVPDAGAGGGYYSGGG 240
The following BLAST results are available for this feature:
BLAST of NO13G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852438.14.200e-9980.43RNA-binding protein Musashi, partial [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01590NO13G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01590.1NO13G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01590.1.cds1NO13G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01590.1 ID=NO13G01590.1|Name=NO13G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ATGGCGGACGCGTACGGCAGTGAACAGCAATCTTCAGGCTACGGGGAGAC
AGGGAATGGAAGCTCGGCGACCCCCCCTCAACGCGAAGGCGCCGGCACCG
GCAACGCCGGTGGTGCTCAGGGGGAGTTCAACAACCCAAACAAGATATTT
GTAGGGGGGGTGGCTTGGCATACGACCGAGGAGGGCCTGTCGAACTACTT
TGGCAAGTACGGGGAGCTGGTGGACGTGGTGTTGATGCGGGACAGGAACA
CGGGCGGGCCCCGCGGGTTTGGCTTCGTTTCGTTCGCCACGCCAGAGGCC
TTGGAGGCTGCCGTGGCTGAAGCGCATATCTTGGATGGGCGCAATCTAGA
CGTGAAGAAGGCGGTGCCTCGGGAGCAGGCCCCCGCGCCAGTTCGTGCCA
TATGGGGGGGCACAGGCGCCGGTCCCCAGAAGCAGTTTCAGGATATCAAG
AAGGTTTTTGTGGGTGGGCTATCACCTGAGGTGACTGAGGAGGCTTTCAG
GGCATACTTTGACACATTTGGAGAGATTACTGATGCCGTGGTGATGATGG
ATAGGACCACGGGGCGGAGTCGTGGATTCGGCTTTGTGACCTATGCGGAG
GAAGCAGCGATGAAGAAGGTATTGGCGCAACCACATGAGATGGACGGTAG
GCCGATGGATGTAAAGAGGGCGGAGCCCAAGATTCCAGATGGGGGTAGGG
AAGGTGGGTATAGAGGAGGGGGAGGAGGAGGGTATGGGGGAGGAAGGGGG
GGGGGAGGGGGCTATGGCGGGTATGGAGGTGGAGGGGGCTATTCTGGAGG
GGGATACGGGGAGGATAGGGGAGGATACATGCCGTACAGTAGAGGAGGGG
GGGGATACGGAGGAGGAGGAGGGTACCCATCGTATCGAGGAGGGGGGGGG
TATTCAGATCGGGGAGGACCAGTAGGGTACTCAGGTGGCGGCGGTTACAG
CAGCGCGTCGCGAGGCGGAGGGCGAGGAGGGTACGGTGAATATGCTGGAT
ACGCCGGGGGAGGTGGGGGAGGGGTGGGGGGTGGATATAGCTCTTATCCT
TCGCAGGGTTACGGTGGCTATCCGTCGTCGGCGCACGCTCCAGGGTACGG
TGGCTACCCCTCGTCCTCCTCTTCCTCCACTGCTCCCTATGCTCATGGCG
GGTACAGTGCGGGCCCTGTTGCTGTTGGTGCTCCGGCGTCGGGGTCGTAC
AACGGGCATGGAGCGCAGGGTTACCACGCTGGAGGAGGAGGAGGAGGAGG
AGGAGGGGGAGAAGGTGGGGCGAGCGGGTACGCGCCGCATCGTGGGCAGC
ACGCGCACCAGGGACGGGTGGAGAGGAGTCACCGCCCTTATTGA
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protein sequence of NO13G01590.1

>NO13G01590.1-protein ID=NO13G01590.1-protein|Name=NO13G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MADAYGSEQQSSGYGETGNGSSATPPQREGAGTGNAGGAQGEFNNPNKIF
VGGVAWHTTEEGLSNYFGKYGELVDVVLMRDRNTGGPRGFGFVSFATPEA
LEAAVAEAHILDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQKQFQDIK
KVFVGGLSPEVTEEAFRAYFDTFGEITDAVVMMDRTTGRSRGFGFVTYAE
EAAMKKVLAQPHEMDGRPMDVKRAEPKIPDGGREGGYRGGGGGGYGGGRG
GGGGYGGYGGGGGYSGGGYGEDRGGYMPYSRGGGGYGGGGGYPSYRGGGG
YSDRGGPVGYSGGGGYSSASRGGGRGGYGEYAGYAGGGGGGVGGGYSSYP
SQGYGGYPSSAHAPGYGGYPSSSSSSTAPYAHGGYSAGPVAVGAPASGSY
NGHGAQGYHAGGGGGGGGGGEGGASGYAPHRGQHAHQGRVERSHRPY*
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mRNA from alignment at chr13:470066..471409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01590.1 ID=NO13G01590.1|Name=NO13G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at chr13:470066..471409- (Nannochloropsis oceanica)
ATGGCGGACGCGTACGGCAGTGAACAGCAATCTTCAGGCTACGGGGAGAC
AGGGAATGGAAGCTCGGCGACCCCCCCTCAACGCGAAGGCGCCGGCACCG
GCAACGCCGGTGGTGCTCAGGGGGAGTTCAACAACCCAAACAAGATATTT
GTAGGGGGGGTGGCTTGGCATACGACCGAGGAGGGCCTGTCGAACTACTT
TGGCAAGTACGGGGAGCTGGTGGACGTGGTGTTGATGCGGGACAGGAACA
CGGGCGGGCCCCGCGGGTTTGGCTTCGTTTCGTTCGCCACGCCAGAGGCC
TTGGAGGCTGCCGTGGCTGAAGCGCATATCTTGGATGGGCGCAATCTAGA
CGTGAAGAAGGCGGTGCCTCGGGAGCAGGCCCCCGCGCCAGTTCGTGCCA
TATGGGGGGGCACAGGCGCCGGTCCCCAGAAGCAGTTTCAGGATATCAAG
AAGGTTTTTGTGGGTGGGCTATCACCTGAGGTGACTGAGGAGGCTTTCAG
GGCATACTTTGACACATTTGGAGAGATTACTGATGCCGTGGTGATGATGG
ATAGGACCACGGGGCGGAGTCGTGGATTCGGCTTTGTGACCTATGCGGAG
GAAGCAGCGATGAAGAAGGTATTGGCGCAACCACATGAGATGGACGGTAG
GCCGATGGATGTAAAGAGGGCGGAGCCCAAGATTCCAGATGGGGGTAGGG
AAGGTGGGTATAGAGGAGGGGGAGGAGGAGGGTATGGGGGAGGAAGGGGG
GGGGGAGGGGGCTATGGCGGGTATGGAGGTGGAGGGGGCTATTCTGGAGG
GGGATACGGGGAGGATAGGGGAGGATACATGCCGTACAGTAGAGGAGGGG
GGGGATACGGAGGAGGAGGAGGGTACCCATCGTATCGAGGAGGGGGGGGG
TATTCAGATCGGGGAGGACCAGTAGGGTACTCAGGTGGCGGCGGTTACAG
CAGCGCGTCGCGAGGCGGAGGGCGAGGAGGGTACGGTGAATATGCTGGAT
ACGCCGGGGGAGGTGGGGGAGGGGTGGGGGGTGGATATAGCTCTTATCCT
TCGCAGGGTTACGGTGGCTATCCGTCGTCGGCGCACGCTCCAGGGTACGG
TGGCTACCCCTCGTCCTCCTCTTCCTCCACTGCTCCCTATGCTCATGGCG
GGTACAGTGCGGGCCCTGTTGCTGTTGGTGCTCCGGCGTCGGGGTCGTAC
AACGGGCATGGAGCGCAGGGTTACCACGCTGGAGGAGGAGGAGGAGGAGG
AGGAGGGGGAGAAGGTGGGGCGAGCGGGTACGCGCCGCATCGTGGGCAGC
ACGCGCACCAGGGACGGGTGGAGAGGAGTCACCGCCCTTATTGA
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Coding sequence (CDS) from alignment at chr13:470066..471409-

>NO13G01590.1 ID=NO13G01590.1|Name=NO13G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr13:470066..471409- (Nannochloropsis oceanica)
ATGGCGGACGCGTACGGCAGTGAACAGCAATCTTCAGGCTACGGGGAGAC
AGGGAATGGAAGCTCGGCGACCCCCCCTCAACGCGAAGGCGCCGGCACCG
GCAACGCCGGTGGTGCTCAGGGGGAGTTCAACAACCCAAACAAGATATTT
GTAGGGGGGGTGGCTTGGCATACGACCGAGGAGGGCCTGTCGAACTACTT
TGGCAAGTACGGGGAGCTGGTGGACGTGGTGTTGATGCGGGACAGGAACA
CGGGCGGGCCCCGCGGGTTTGGCTTCGTTTCGTTCGCCACGCCAGAGGCC
TTGGAGGCTGCCGTGGCTGAAGCGCATATCTTGGATGGGCGCAATCTAGA
CGTGAAGAAGGCGGTGCCTCGGGAGCAGGCCCCCGCGCCAGTTCGTGCCA
TATGGGGGGGCACAGGCGCCGGTCCCCAGAAGCAGTTTCAGGATATCAAG
AAGGTTTTTGTGGGTGGGCTATCACCTGAGGTGACTGAGGAGGCTTTCAG
GGCATACTTTGACACATTTGGAGAGATTACTGATGCCGTGGTGATGATGG
ATAGGACCACGGGGCGGAGTCGTGGATTCGGCTTTGTGACCTATGCGGAG
GAAGCAGCGATGAAGAAGGTATTGGCGCAACCACATGAGATGGACGGTAG
GCCGATGGATGTAAAGAGGGCGGAGCCCAAGATTCCAGATGGGGGTAGGG
AAGGTGGGTATAGAGGAGGGGGAGGAGGAGGGTATGGGGGAGGAAGGGGG
GGGGGAGGGGGCTATGGCGGGTATGGAGGTGGAGGGGGCTATTCTGGAGG
GGGATACGGGGAGGATAGGGGAGGATACATGCCGTACAGTAGAGGAGGGG
GGGGATACGGAGGAGGAGGAGGGTACCCATCGTATCGAGGAGGGGGGGGG
TATTCAGATCGGGGAGGACCAGTAGGGTACTCAGGTGGCGGCGGTTACAG
CAGCGCGTCGCGAGGCGGAGGGCGAGGAGGGTACGGTGAATATGCTGGAT
ACGCCGGGGGAGGTGGGGGAGGGGTGGGGGGTGGATATAGCTCTTATCCT
TCGCAGGGTTACGGTGGCTATCCGTCGTCGGCGCACGCTCCAGGGTACGG
TGGCTACCCCTCGTCCTCCTCTTCCTCCACTGCTCCCTATGCTCATGGCG
GGTACAGTGCGGGCCCTGTTGCTGTTGGTGCTCCGGCGTCGGGGTCGTAC
AACGGGCATGGAGCGCAGGGTTACCACGCTGGAGGAGGAGGAGGAGGAGG
AGGAGGGGGAGAAGGTGGGGCGAGCGGGTACGCGCCGCATCGTGGGCAGC
ACGCGCACCAGGGACGGGTGGAGAGGAGTCACCGCCCTTATTGA
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Synonyms
Publications