NO13G01530.1, NO13G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01530.1
Unique NameNO13G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2307
Alignment locationchr13:455927..458233 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:455927..458233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01530.1 vs.
Match: EWM21818.1 (aspartyl-trna cytoplasmic [Nannochloropsis gaditana])

HSP 1 Score: 932.6 bits (2409), Expect = 6.400e-268
Identity = 464/611 (75.94%), Postives = 524/611 (85.76%), Query Frame = 0 
Query:    6 SSPGCHPAQCCCSRRRPFPISSIVLFLTT-MLGTVAVRNTLAVMRRRPHT--STTTAITFIRPTT-PAALRPTLRPFTSNTPSRSTPRQPTRRTSPLASNTPAAITAAFPEISYAQSDLPTQGENAVPAVGKYTCIMSQTELHRDFQDMNKLSAADAGKVVWVRARIGNVRAKGNSCFIVLRQGPFDTLQACYFKDKSDPERSKAMLKFMGGLTSETVVDIQGTLATANVKSCSVNDVELSISRVYVVSDAGAILPFQLEDAGRPEVEVEASQGTERPFPRIGQELRLDNRWLDLRVPANNCIMRVQSGICQLFRESLYEQGFVEIHTPKLIGGESEGGAGVFRTDYFGRPACLAQSPQLYKQMAMSADLGRVFEIGPVFRAENSNTRRHLCEFTGLDLEMGIEEHYNEVLLVTHRMFKHIFEGLEKRWAKELAVIREQYASEPVAFTDDPCVLHWPEAMSLLRGEGGMEDVDDYDDLTGAQELKLGELVKKKYGADFFILDKYPSAIRPFYTMPCPENEKFSNSYDMFLRGQEICSGAQRIHDPELLTRTIEAKGVPVEPLESYINSFRHGVPPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCEP 613
            SSP   PA      +R F  S ++LFLTT +L    +R+  A++RR      S   +  FIRP + P  +    R F    P +ST   P +RT+PL S +PA  TAA+PEISYAQSD PT+G++ VPAV  YT +MSQ+ELHRDF ++ KLSAADAGKVVWVRARI NVRAKGNSCF+VLRQGPF+T+QACYFKDKS PERS+AMLKFMGGLT E+VVD+QG+L  A VKSCSV DVELSI RVYVVS A AILPFQLEDAGRPE EVEASQ T+RPFPRIGQELRLDNRWLDLRVPANNCIMR+QSG+CQLFRESLY +GFVEIHTPKLIGGESEGGAGVF+TDYFGRPACLAQSPQLYKQMA+SADLGRVFEIGPVFRAENSNTRRHLCEFTGLDLEM ++EHYNEVL + HRMFKHIFEGLE R+AKELA+IREQYAS+PVAFTD PC++HWPEA+ +LR EGGM +V + +DLTGAQEL+LGELVKK++GADFFILDKYPSA+RPFYTMPCP +  +SNSYDMFLRGQEICSGAQRIHDP+LLTRTI AKG+P+EPLESY+N+FRHGVPPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCEP
Sbjct:    3 SSPDRGPA------KRLFFSSGLLLFLTTTVLRKTGMRSASAILRRGAFNCISPFNSAAFIRPVSVPGRVH---RNFIGGNPHKSTS-SPGQRTNPLRSTSPA--TAAYPEISYAQSDQPTEGDDPVPAVANYTRLMSQSELHRDFHELGKLSAADAGKVVWVRARIANVRAKGNSCFLVLRQGPFETVQACYFKDKSAPERSEAMLKFMGGLTCESVVDVQGSLQAAQVKSCSVTDVELSIQRVYVVSSAEAILPFQLEDAGRPEAEVEASQSTDRPFPRIGQELRLDNRWLDLRVPANNCIMRIQSGVCQLFRESLYAEGFVEIHTPKLIGGESEGGAGVFKTDYFGRPACLAQSPQLYKQMAVSADLGRVFEIGPVFRAENSNTRRHLCEFTGLDLEMTLDEHYNEVLAIAHRMFKHIFEGLETRFAKELAIIREQYASDPVAFTDGPCIVHWPEAIRMLREEGGMPEVGELEDLTGAQELRLGELVKKRHGADFFILDKYPSAVRPFYTMPCPSDAAYSNSYDMFLRGQEICSGAQRIHDPDLLTRTIAAKGLPMEPLESYVNAFRHGVPPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCEP 601
The following BLAST results are available for this feature:
BLAST of NO13G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21818.16.400e-26875.94aspartyl-trna cytoplasmic [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01530NO13G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01530.1NO13G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01530.1.cds1NO13G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01530.1 ID=NO13G01530.1|Name=NO13G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp
CACCCACCTTATCAAGCAAGATACATCCTCCCTACCGTACAGGCAGCCCT
CACCATTGCATGGGATCGTCGCGCACTAAGTGCTGATGGTCTACTTCTCC
TCCTCTCCCGGCTGCCATCCTGCCCAGTGCTGCTGCTCTCGTCGTCGTCC
TTTCCCTATCTCAAGTATCGTCCTCTTCCTCACCACCATGCTGGGCACTG
TGGCCGTGCGCAATACTCTGGCGGTAATGCGCAGAAGACCCCACACTTCC
ACCACCACCGCTATTACCTTCATCCGACCCACTACCCCAGCAGCACTAAG
ACCAACTCTCCGTCCTTTCACCTCTAACACACCCTCCCGAAGCACCCCCC
GCCAGCCTACCCGTCGCACGAGTCCCCTCGCCAGCAACACCCCTGCCGCA
ATTACGGCTGCATTCCCCGAAATCAGCTACGCCCAATCGGACCTACCTAC
ACAGGGGGAGAATGCCGTGCCGGCTGTGGGGAAGTATACATGCATCATGT
CGCAAACAGAGCTGCACCGCGATTTCCAAGACATGAACAAACTCAGCGCT
GCCGACGCAGGGAAAGTGGTGTGGGTCCGTGCACGGATCGGAAACGTGCG
TGCAAAAGGAAATTCATGCTTTATTGTCTTAAGACAGGGCCCTTTTGATA
CTCTCCAGGCATGTTATTTTAAGGATAAAAGTGACCCGGAGCGGAGCAAG
GCCATGCTCAAATTCATGGGGGGGCTGACGAGTGAGACAGTGGTGGATAT
ACAGGGGACCTTGGCAACAGCCAACGTGAAGAGTTGTTCGGTCAATGACG
TTGAATTATCGATTTCTCGAGTGTACGTTGTCTCGGATGCTGGTGCGATT
CTGCCTTTTCAGTTGGAGGATGCCGGGAGACCCGAGGTCGAGGTGGAGGC
CAGTCAGGGGACCGAGCGACCTTTCCCGCGGATAGGACAGGAACTAAGGT
TGGACAATCGATGGTTGGATTTAAGGGTACCGGCGAATAATTGTATTATG
AGGGTTCAGTCGGGGATTTGTCAGTTGTTTCGGGAGAGCCTGTACGAGCA
GGGTTTCGTGGAGATCCACACGCCGAAGCTGATTGGGGGGGAGAGCGAGG
GAGGGGCGGGAGTATTTCGCACGGATTACTTCGGGCGTCCTGCGTGTTTG
GCACAGTCTCCGCAGCTTTATAAGCAGATGGCGATGAGTGCGGATTTGGG
GAGGGTGTTTGAGATAGGGCCCGTCTTCAGGGCTGAGAACAGTAATACCC
GCAGACATCTATGTGAGTTTACCGGGTTGGACCTCGAGATGGGGATCGAA
GAACATTACAACGAGGTATTGCTCGTGACTCATCGGATGTTTAAGCACAT
CTTTGAGGGACTGGAGAAGAGGTGGGCCAAGGAGTTGGCGGTGATTAGAG
AACAGTACGCATCGGAGCCCGTGGCTTTCACCGACGACCCGTGTGTATTG
CACTGGCCCGAGGCGATGAGCTTATTGAGGGGCGAAGGGGGAATGGAGGA
CGTGGATGATTACGACGATTTGACCGGGGCGCAGGAATTGAAGCTGGGCG
AATTGGTGAAGAAGAAGTATGGCGCAGATTTCTTTATCCTGGACAAATAC
CCTTCGGCGATTCGGCCGTTTTACACCATGCCATGTCCGGAGAATGAAAA
ATTCAGTAATTCGTACGATATGTTTTTGAGGGGGCAGGAGATTTGTAGTG
GTGCTCAGCGAATTCATGACCCCGAGTTGTTGACGAGGACCATTGAAGCC
AAGGGCGTGCCAGTGGAGCCGTTGGAGAGTTATATTAATTCATTTCGGCA
TGGTGTCCCACCGCATGGCGGGGCGGGGATTGGGTTGGAGCGGGTGGTGT
TTTTGTACTTGGGCTTGGATAATGTACGCAAGGCGTCTATGTTCCCCCGA
GATCCGAACAGGTGTGAGCCTTAAGGAGTGAAATTTCTAAGGAGTGAGAT
GAAGGACTATAGGACATTCATTTGTTGGTGGATGAGGAGGAAGTGGAGTC
ACCTTGCCACGAGGAAGGAGAGGACAGAGAACAAAGAAGAAAAGCGCGAT
CGGTAAATTCCATGAATCGGTGCCTATTAAATTCGGATTTCAACAACTTA
CGACTCTGCACAGATTTAATGTACGAATTGATTCAAGTTTCTCGCAAAAA
TGGCGATGAGGAAAGTCTTCCGCTGACCACTTGCCCTCGTACACCAAAAC
CCTAGAAACCGAAAAAGTGAATTTGACGAGCTTTCAAATAATTATCAAGA
TAAAGCGTCCAACAAGCAATAGATGATCATAGCACACATCGAGGCACAGC
GAAGCGC
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protein sequence of NO13G01530.1

>NO13G01530.1-protein ID=NO13G01530.1-protein|Name=NO13G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MVYFSSSPGCHPAQCCCSRRRPFPISSIVLFLTTMLGTVAVRNTLAVMRR
RPHTSTTTAITFIRPTTPAALRPTLRPFTSNTPSRSTPRQPTRRTSPLAS
NTPAAITAAFPEISYAQSDLPTQGENAVPAVGKYTCIMSQTELHRDFQDM
NKLSAADAGKVVWVRARIGNVRAKGNSCFIVLRQGPFDTLQACYFKDKSD
PERSKAMLKFMGGLTSETVVDIQGTLATANVKSCSVNDVELSISRVYVVS
DAGAILPFQLEDAGRPEVEVEASQGTERPFPRIGQELRLDNRWLDLRVPA
NNCIMRVQSGICQLFRESLYEQGFVEIHTPKLIGGESEGGAGVFRTDYFG
RPACLAQSPQLYKQMAMSADLGRVFEIGPVFRAENSNTRRHLCEFTGLDL
EMGIEEHYNEVLLVTHRMFKHIFEGLEKRWAKELAVIREQYASEPVAFTD
DPCVLHWPEAMSLLRGEGGMEDVDDYDDLTGAQELKLGELVKKKYGADFF
ILDKYPSAIRPFYTMPCPENEKFSNSYDMFLRGQEICSGAQRIHDPELLT
RTIEAKGVPVEPLESYINSFRHGVPPHGGAGIGLERVVFLYLGLDNVRKA
SMFPRDPNRCEP*
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mRNA from alignment at chr13:455927..458233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01530.1 ID=NO13G01530.1|Name=NO13G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp|location=Sequence derived from alignment at chr13:455927..458233+ (Nannochloropsis oceanica)
CACCCACCTTATCAAGCAAGATACATCCTCCCTACCGTACAGGCAGCCCT
CACCATTGCATGGGATCGTCGCGCACTAAGTGCTGATGGTCTACTTCTCC
TCCTCTCCCGGCTGCCATCCTGCCCAGTGCTGCTGCTCTCGTCGTCGTCC
TTTCCCTATCTCAAGTATCGTCCTCTTCCTCACCACCATGCTGGGCACTG
TGGCCGTGCGCAATACTCTGGCGGTAATGCGCAGAAGACCCCACACTTCC
ACCACCACCGCTATTACCTTCATCCGACCCACTACCCCAGCAGCACTAAG
ACCAACTCTCCGTCCTTTCACCTCTAACACACCCTCCCGAAGCACCCCCC
GCCAGCCTACCCGTCGCACGAGTCCCCTCGCCAGCAACACCCCTGCCGCA
ATTACGGCTGCATTCCCCGAAATCAGCTACGCCCAATCGGACCTACCTAC
ACAGGGGGAGAATGCCGTGCCGGCTGTGGGGAAGTATACATGCATCATGT
CGCAAACAGAGCTGCACCGCGATTTCCAAGACATGAACAAACTCAGCGCT
GCCGACGCAGGGAAAGTGGTGTGGGTCCGTGCACGGATCGGAAACGTGCG
TGCAAAAGGAAATTCATGCTTTATTGTCTTAAGACAGGGCCCTTTTGATA
CTCTCCAGGCATGTTATTTTAAGGATAAAAGTGACCCGGAGCGGAGCAAG
GCCATGCTCAAATTCATGGGGGGGCTGACGAGTGAGACAGTGGTGGATAT
ACAGGGGACCTTGGCAACAGCCAACGTGAAGAGTTGTTCGGTCAATGACG
TTGAATTATCGATTTCTCGAGTGTACGTTGTCTCGGATGCTGGTGCGATT
CTGCCTTTTCAGTTGGAGGATGCCGGGAGACCCGAGGTCGAGGTGGAGGC
CAGTCAGGGGACCGAGCGACCTTTCCCGCGGATAGGACAGGAACTAAGGT
TGGACAATCGATGGTTGGATTTAAGGGTACCGGCGAATAATTGTATTATG
AGGGTTCAGTCGGGGATTTGTCAGTTGTTTCGGGAGAGCCTGTACGAGCA
GGGTTTCGTGGAGATCCACACGCCGAAGCTGATTGGGGGGGAGAGCGAGG
GAGGGGCGGGAGTATTTCGCACGGATTACTTCGGGCGTCCTGCGTGTTTG
GCACAGTCTCCGCAGCTTTATAAGCAGATGGCGATGAGTGCGGATTTGGG
GAGGGTGTTTGAGATAGGGCCCGTCTTCAGGGCTGAGAACAGTAATACCC
GCAGACATCTATGTGAGTTTACCGGGTTGGACCTCGAGATGGGGATCGAA
GAACATTACAACGAGGTATTGCTCGTGACTCATCGGATGTTTAAGCACAT
CTTTGAGGGACTGGAGAAGAGGTGGGCCAAGGAGTTGGCGGTGATTAGAG
AACAGTACGCATCGGAGCCCGTGGCTTTCACCGACGACCCGTGTGTATTG
CACTGGCCCGAGGCGATGAGCTTATTGAGGGGCGAAGGGGGAATGGAGGA
CGTGGATGATTACGACGATTTGACCGGGGCGCAGGAATTGAAGCTGGGCG
AATTGGTGAAGAAGAAGTATGGCGCAGATTTCTTTATCCTGGACAAATAC
CCTTCGGCGATTCGGCCGTTTTACACCATGCCATGTCCGGAGAATGAAAA
ATTCAGTAATTCGTACGATATGTTTTTGAGGGGGCAGGAGATTTGTAGTG
GTGCTCAGCGAATTCATGACCCCGAGTTGTTGACGAGGACCATTGAAGCC
AAGGGCGTGCCAGTGGAGCCGTTGGAGAGTTATATTAATTCATTTCGGCA
TGGTGTCCCACCGCATGGCGGGGCGGGGATTGGGTTGGAGCGGGTGGTGT
TTTTGTACTTGGGCTTGGATAATGTACGCAAGGCGTCTATGTTCCCCCGA
GATCCGAACAGGTGTGAGCCTTAAGGAGTGAAATTTCTAAGGAGTGAGAT
GAAGGACTATAGGACATTCATTTGTTGGTGGATGAGGAGGAAGTGGAGTC
ACCTTGCCACGAGGAAGGAGAGGACAGAGAACAAAGAAGAAAAGCGCGAT
CGGTAAATTCCATGAATCGGTGCCTATTAAATTCGGATTTCAACAACTTA
CGACTCTGCACAGATTTAATGTACGAATTGATTCAAGTTTCTCGCAAAAA
TGGCGATGAGGAAAGTCTTCCGCTGACCACTTGCCCTCGTACACCAAAAC
CCTAGAAACCGAAAAAGTGAATTTGACGAGCTTTCAAATAATTATCAAGA
TAAAGCGTCCAACAAGCAATAGATGATCATAGCACACATCGAGGCACAGC
GAAGCGC
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Coding sequence (CDS) from alignment at chr13:455927..458233+

>NO13G01530.1 ID=NO13G01530.1|Name=NO13G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr13:455927..458233+ (Nannochloropsis oceanica)
ATGGTCTACTTCTCCTCCTCTCCCGGCTGCCATCCTGCCCAGTGCTGCTG
CTCTCGTCGTCGTCCTTTCCCTATCTCAAGTATCGTCCTCTTCCTCACCA
CCATGCTGGGCACTGTGGCCGTGCGCAATACTCTGGCGGTAATGCGCAGA
AGACCCCACACTTCCACCACCACCGCTATTACCTTCATCCGACCCACTAC
CCCAGCAGCACTAAGACCAACTCTCCGTCCTTTCACCTCTAACACACCCT
CCCGAAGCACCCCCCGCCAGCCTACCCGTCGCACGAGTCCCCTCGCCAGC
AACACCCCTGCCGCAATTACGGCTGCATTCCCCGAAATCAGCTACGCCCA
ATCGGACCTACCTACACAGGGGGAGAATGCCGTGCCGGCTGTGGGGAAGT
ATACATGCATCATGTCGCAAACAGAGCTGCACCGCGATTTCCAAGACATG
AACAAACTCAGCGCTGCCGACGCAGGGAAAGTGGTGTGGGTCCGTGCACG
GATCGGAAACGTGCGTGCAAAAGGAAATTCATGCTTTATTGTCTTAAGAC
AGGGCCCTTTTGATACTCTCCAGGCATGTTATTTTAAGGATAAAAGTGAC
CCGGAGCGGAGCAAGGCCATGCTCAAATTCATGGGGGGGCTGACGAGTGA
GACAGTGGTGGATATACAGGGGACCTTGGCAACAGCCAACGTGAAGAGTT
GTTCGGTCAATGACGTTGAATTATCGATTTCTCGAGTGTACGTTGTCTCG
GATGCTGGTGCGATTCTGCCTTTTCAGTTGGAGGATGCCGGGAGACCCGA
GGTCGAGGTGGAGGCCAGTCAGGGGACCGAGCGACCTTTCCCGCGGATAG
GACAGGAACTAAGGTTGGACAATCGATGGTTGGATTTAAGGGTACCGGCG
AATAATTGTATTATGAGGGTTCAGTCGGGGATTTGTCAGTTGTTTCGGGA
GAGCCTGTACGAGCAGGGTTTCGTGGAGATCCACACGCCGAAGCTGATTG
GGGGGGAGAGCGAGGGAGGGGCGGGAGTATTTCGCACGGATTACTTCGGG
CGTCCTGCGTGTTTGGCACAGTCTCCGCAGCTTTATAAGCAGATGGCGAT
GAGTGCGGATTTGGGGAGGGTGTTTGAGATAGGGCCCGTCTTCAGGGCTG
AGAACAGTAATACCCGCAGACATCTATGTGAGTTTACCGGGTTGGACCTC
GAGATGGGGATCGAAGAACATTACAACGAGGTATTGCTCGTGACTCATCG
GATGTTTAAGCACATCTTTGAGGGACTGGAGAAGAGGTGGGCCAAGGAGT
TGGCGGTGATTAGAGAACAGTACGCATCGGAGCCCGTGGCTTTCACCGAC
GACCCGTGTGTATTGCACTGGCCCGAGGCGATGAGCTTATTGAGGGGCGA
AGGGGGAATGGAGGACGTGGATGATTACGACGATTTGACCGGGGCGCAGG
AATTGAAGCTGGGCGAATTGGTGAAGAAGAAGTATGGCGCAGATTTCTTT
ATCCTGGACAAATACCCTTCGGCGATTCGGCCGTTTTACACCATGCCATG
TCCGGAGAATGAAAAATTCAGTAATTCGTACGATATGTTTTTGAGGGGGC
AGGAGATTTGTAGTGGTGCTCAGCGAATTCATGACCCCGAGTTGTTGACG
AGGACCATTGAAGCCAAGGGCGTGCCAGTGGAGCCGTTGGAGAGTTATAT
TAATTCATTTCGGCATGGTGTCCCACCGCATGGCGGGGCGGGGATTGGGT
TGGAGCGGGTGGTGTTTTTGTACTTGGGCTTGGATAATGTACGCAAGGCG
TCTATGTTCCCCCGAGATCCGAACAGGTGTGAGCCTTAA
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Synonyms
Publications