NO13G01520.2, NO13G01520.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01520.2
Unique NameNO13G01520.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2336
Alignment locationchr13:453488..455926 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:453488..455926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01520.2 vs.
Match: XP_005853543.1 (3-hydroxybutyrate dehydrogenase [Nannochloropsis gaditana CCMP526]; EKU22812.1 3-hydroxybutyrate dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.4 bits (812), Expect = 4.000e-83
Identity = 174/244 (71.31%), Postives = 200/244 (81.97%), Query Frame = 0 
Query:    1 MEIKTTAFLVALLAASPYILELTTRAAYPVPAPGGGVVLTGASTGIGAHAAHSLAEAGFLVFAGVRKEADGEALKANAPTPEAREHIVPIILDVTKQDQIDAAVKIVNSTLTAKGGVPLVGLVNNAGVGGGMKPVEFENMEDLRNLFDVNYFGAVSTTKAFLSLLRDGKGRVINISSMAGLFSAPMMMSYCGSKFALEAFSDTLRVEVQKHGVSVSVVEPAYVQSAIFGKNDAAMAKIKERAGS 245
            M I+ +A LVA LA+ PY+L+L TR  YPVP P G VV+TGASTGIGAHAAHSLA AGFLVFAGVRKE DGE LKA APT E++E+IVPIILDVTKQ+QID AV+ V+STL + GG PLVGLVNNAGVGG  KPVEF++M+DLR LFDVN+FGA++TTKAFL+LLR  KGRVINISS+AGL  AP M  YC SK+ALEAFSD LRVE+ + GVSVSVVEPAYV SAIFGK      ++KE A S
Sbjct:    2 MGIRFSALLVAFLASIPYLLDLATRREYPVPPPEGAVVVTGASTGIGAHAAHSLARAGFLVFAGVRKELDGETLKAEAPTLESQENIVPIILDVTKQEQIDKAVQTVSSTLDSLGGRPLVGLVNNAGVGGSNKPVEFQSMDDLRWLFDVNFFGAIATTKAFLALLRASKGRVINISSLAGLTVAPFMTDYCASKWALEAFSDALRVEMGELGVSVSVVEPAYVTSAIFGK---IATRVKETADS 242
The following BLAST results are available for this feature:
BLAST of NO13G01520.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853543.14.000e-8371.313-hydroxybutyrate dehydrogenase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01520NO13G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01520.2NO13G01520.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01520.2.cds1NO13G01520.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01520.2 ID=NO13G01520.2|Name=NO13G01520.2|organism=Nannochloropsis oceanica|type=mRNA|length=2336bp
CTGCGGGTTTAAGAGTAGTGCTGGAGGTGCGGTCGAAGCCCGGGCGGCTT
TTCTGCCACTTGCTTGCCTGCCACTTCGTCCGTCGTCTGAAAGACGTGAA
CAACGTGATGGGGTGTGGCAAGGGTGCGTAACTGTGTGCTTTACTTTGCA
AATGAAATGGTTAGTGCGTCGCCTCAAAATATCGCACGTAACCTCCTTCT
TCTCCTCTAACAAGGTCGCGCTAGTCGCCTCAGGAGTCCACCCATCCCTC
AACACAGCATCTGTGTCGTCCCCCGCCTTCCCCCGCAAGACGCATCTAGC
TGTCCCCGTCCCCACACTTTACACACATTGCACAGCTCCAAGTAACTATG
GAAATCAAAACCACCGCCTTCTTGGTTGCCCTCCTGGCCGCCTCGCCCTA
CATTTTGGAGCTCACGACCCGCGCTGCCTACCCTGTGCCCGCTCCCGGCG
GTGGCGTTGTCTTAACTGGGGCCTCGACAGGTATCGGCGCACACGCTGCC
CACAGCCTGGCCGAGGCTGGCTTCTTGGTGTTCGCTGGCGTACGAAAAGA
GGCGGACGGGGAAGCACTCAAGGCCAATGCTCCTACCCCGGAGGCCCGTG
AGCATATTGTACCGATTATACTTGACGTGACGAAGCAAGATCAGATTGAT
GCGGCTGTGAAGATCGTCAATAGCACATTGACCGCCAAAGGGGGGGTGCC
CTTGGTAGGTTTGGTGAATAACGCAGGGGTTGGAGGAGGGATGAAACCGG
TAGAGTTCGAGAATATGGAGGATTTGAGGAATTTGTTTGATGTGAACTAT
TTTGGGGCTGTCTCGACGACAAAGGCCTTTCTTTCCCTCCTCCGTGATGG
AAAAGGAAGGGTGATTAACATCAGCAGCATGGCTGGGCTGTTTTCCGCAC
CCATGATGATGAGCTATTGCGGGAGTAAGTTTGCATTGGAAGCCTTCTCG
GATACGTTGAGAGTGGAGGTGCAGAAGCATGGTGTGTCGGTCTCAGTGGT
AGAGCCCGCCTATGTCCAGAGTGCCATTTTCGGTAAAAACGACGCGGCAA
TGGCGAAAATCAAGGAGAGGGCTGGGTCGCAGGTAAGTGTATGAACGTGT
CTGTGTGGCCAAATCATCTCGCTTGAATCTTACTTGGGCTTTGCTTTTGA
TTGTGTACCTGTAACTCAACCTGTGTGTCTCTCTCTCCCAACTCACCTAA
TTGCCTACCTTCTCCTCACTCCCTAACTCCCTCCATCCTCCTCACTCCCT
CACTCCCTCCCTTTAACCACTCTGCTTCCTCGAAGATCGATAAATTGTAT
GGGCACGTCAGTGCCCGCCCCGAGTACTTTCAACAGTGCGTGGCCAAGGC
CAGCCCCCCGTCTGTGACGAGCGACGCCATACTGCATGCACTAACCTCGA
AGTACCCACAGACCCGCTATGTGGTGGCCAATGTAGACGGGAAACCAGCC
AAGGTACTCGGGTGGGTGGTGTGGTTGCTGAATGATCGATTGAGGGATAG
GATGGTAGTGCGTAGCGTCATTGACAGGTCCAAGGCGCGGCGCGTGTGAG
GGGGCGAAGGAGGGGGGAAGGAAGGCCTAGAATGTGGAGGGGGAAGACCA
GTAGAAGGAGCAGGAATGAGAGATGGAGAAGCAATGTAGACAATCACAGG
GAAGGGAAAGGGAAATGGGTGAAGATGGAATAAGATGGAATGGGAAAATG
CCAGACGGGAGCAACGAGAGAGGAGGCTAGGGAGGAGAAATGACACGCTG
AGTAACGCGGACATGTGCAGCAACGGGAATGAAAGGAGGGATGGAGGGAG
GGAAGAGGGGAGGGGGCGTGGGTCAGCGTGTCGACCAAATTCAATCGGCG
GATGTGAAAAGAAAGAGGAAAATGGAATTGAAATGCAATGCAGGAAGAGG
GAGAGTGGGCGAGAGAAATAGAGAAAGTGAACACATAAAAACACGCAGAA
ACACACACAAAGCGATGACACAGAAACACCACAACTTCAACATCCAACCA
AGCAATGCCCGCTTTCTATGTATGCATTTAAGAATGACACATTCGACACA
TTGTTTCTTCCGCCTCGTCCATTTCCTTTCTGCTATGCTACAGGTGCATT
TACAAACCCAAGGAGGAAGAGCGAACGTAATCAAAACCATCCCACGCCCC
ATCATCCTTGTCCTTCCATTCTCCCTCTTTCCTTCTGCCCCTCCTCCCCC
CTTCTCTCACCGTCCCGGCCCCGCACATTCCCCTCACCTTCCCAAACGCA
GATCCACACATCATCCCTCCCTCCTTACCCCCCCATCCCTCTCCTTCCTC
CTCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTC
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protein sequence of NO13G01520.2

>NO13G01520.2-protein ID=NO13G01520.2-protein|Name=NO13G01520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MEIKTTAFLVALLAASPYILELTTRAAYPVPAPGGGVVLTGASTGIGAHA
AHSLAEAGFLVFAGVRKEADGEALKANAPTPEAREHIVPIILDVTKQDQI
DAAVKIVNSTLTAKGGVPLVGLVNNAGVGGGMKPVEFENMEDLRNLFDVN
YFGAVSTTKAFLSLLRDGKGRVINISSMAGLFSAPMMMSYCGSKFALEAF
SDTLRVEVQKHGVSVSVVEPAYVQSAIFGKNDAAMAKIKERAGSQVSV*
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mRNA from alignment at chr13:453488..455926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01520.2 ID=NO13G01520.2|Name=NO13G01520.2|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at chr13:453488..455926- (Nannochloropsis oceanica)
CTGCGGGTTTAAGAGTAGTGCTGGAGGTGCGGTCGAAGCCCGGGCGGCTT
TTCTGCCACTTGCTTGCCTGCCACTTCGTCCGTCGTCTGAAAGACGTGAA
CAACGTGATGGGGTGTGGCAAGGGTGCGTAACTGTGTGCTTTACTTTGCA
AATGAAATGGTTAGTGCGTCGCCTCAAAATATCGCACGTAACCTCCTTCT
TCTCCTCTAACAAGGTCGCGCTAGTCGCCTCAGGAGTCCACCCATCCCTC
AACACAGCATCTGTGTCGTCCCCCGCCTTCCCCCGCAAGACGCATCTAGC
TGTCCCCGTCCCCACACTTTACACACATTGCACAGCTCCAAGTAACTATG
GAAATCAAAACCACCGCCTTCTTGGTTGCCCTCCTGGCCGCCTCGCCCTA
CATTTTGGAGCTCACGACCCGCGCTGCCTACCCTGTGCCCGCTCCCGGCG
GTGGCGTTGTCTTAACTGGGGCCTCGACAGGTATCGGCGCACACGCTGCC
CACAGCCTGGCCGAGGCTGGCTTCTTGGTGTTCGCTGGCGTACGAAAAGA
GGCGGACGGGGAAGCACTCAAGGCCAATGCTCCTACCCCGGAGGCCCGTG
AGCATATTGTACCGATTATACTTGACGTGACGAAGCAAGATCAGATTGAT
GCGGCTGTGAAGATCGTCAATAGCACATTGACCGCCAAAGGGGGGGTGCC
CTTGGTAGGTTTGGTGAATAACGCAGGGGTTGGAGGAGGGATGAAACCGG
TAGAGTTCGAGAATATGGAGGATTTGAGGAATTTGTTTGATGTGAACTAT
TTTGGGGCTGTCTCGACGACAAAGGCCTTTCTTTCCCTCCTCCGTGATGG
AAAAGGAAGGGTGATTAACATCAGCAGCATGGCTGGGCTGTTTTCCGCAC
CCATGATGATGAGCTATTGCGGGAGTAAGTTTGCATTGGAAGCCTTCTCG
GATACGTTGAGAGTGGAGGTGCAGAAGCATGGTGTGTCGGTCTCAGTGGT
AGAGCCCGCCTATGTCCAGAGTGCCATTTTCGGTAAAAACGACGCGGCAA
TGGCGAAAATCAAGGAGAGGGCTGGGTCGCAGGTAAGTGTATGAACGTGT
CTGTGTGGCCAAATCATCTCGCTTGAATCTTACTTGGGCTTTGCTTTTGA
TTGTGTACCTGTAACTCAACCTGTGTGTCTCTCTCTCCCAACTCACCTAA
TTGCCTACCTTCTCCTCACTCCCTAACTCCCTCCATCCTCCTCACTCCCT
CACTCCCTCCCTTTAACCACTCTGCTTCCTCGAAGATCGATAAATTGTAT
GGGCACGTCAGTGCCCGCCCCGAGTACTTTCAACAGTGCGTGGCCAAGGC
CAGCCCCCCGTCTGTGACGAGCGACGCCATACTGCATGCACTAACCTCGA
AGTACCCACAGACCCGCTATGTGGTGGCCAATGTAGACGGTACGTCGAAC
CCCCTCTTTCTCTTCTTTCCCTCCCTCCCACTGTATTTCGAGAGACACAC
TCTCCCTCCTCTCACAAACACCTTCTCCATTTTTCTTTCCAGGGAAACCA
GCCAAGGTACTCGGGTGGGTGGTGTGGTTGCTGAATGATCGATTGAGGGA
TAGGATGGTAGTGCGTAGCGTCATTGACAGGTCCAAGGCGCGGCGCGTGT
GAGGGGGCGAAGGAGGGGGGAAGGAAGGCCTAGAATGTGGAGGGGGAAGA
CCAGTAGAAGGAGCAGGAATGAGAGATGGAGAAGCAATGTAGACAATCAC
AGGGAAGGGAAAGGGAAATGGGTGAAGATGGAATAAGATGGAATGGGAAA
ATGCCAGACGGGAGCAACGAGAGAGGAGGCTAGGGAGGAGAAATGACACG
CTGAGTAACGCGGACATGTGCAGCAACGGGAATGAAAGGAGGGATGGAGG
GAGGGAAGAGGGGAGGGGGCGTGGGTCAGCGTGTCGACCAAATTCAATCG
GCGGATGTGAAAAGAAAGAGGAAAATGGAATTGAAATGCAATGCAGGAAG
AGGGAGAGTGGGCGAGAGAAATAGAGAAAGTGAACACATAAAAACACGCA
GAAACACACACAAAGCGATGACACAGAAACACCACAACTTCAACATCCAA
CCAAGCAATGCCCGCTTTCTATGTATGCATTTAAGAATGACACATTCGAC
ACATTGTTTCTTCCGCCTCGTCCATTTCCTTTCTGCTATGCTACAGGTGC
ATTTACAAACCCAAGGAGGAAGAGCGAACGTAATCAAAACCATCCCACGC
CCCATCATCCTTGTCCTTCCATTCTCCCTCTTTCCTTCTGCCCCTCCTCC
CCCCTTCTCTCACCGTCCCGGCCCCGCACATTCCCCTCACCTTCCCAAAC
GCAGATCCACACATCATCCCTCCCTCCTTACCCCCCCATCCCTCTCCTTC
CTCCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTC
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Coding sequence (CDS) from alignment at chr13:453488..455926-

>NO13G01520.2 ID=NO13G01520.2|Name=NO13G01520.2|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr13:453488..455926- (Nannochloropsis oceanica)
ATGGAAATCAAAACCACCGCCTTCTTGGTTGCCCTCCTGGCCGCCTCGCC
CTACATTTTGGAGCTCACGACCCGCGCTGCCTACCCTGTGCCCGCTCCCG
GCGGTGGCGTTGTCTTAACTGGGGCCTCGACAGGTATCGGCGCACACGCT
GCCCACAGCCTGGCCGAGGCTGGCTTCTTGGTGTTCGCTGGCGTACGAAA
AGAGGCGGACGGGGAAGCACTCAAGGCCAATGCTCCTACCCCGGAGGCCC
GTGAGCATATTGTACCGATTATACTTGACGTGACGAAGCAAGATCAGATT
GATGCGGCTGTGAAGATCGTCAATAGCACATTGACCGCCAAAGGGGGGGT
GCCCTTGGTAGGTTTGGTGAATAACGCAGGGGTTGGAGGAGGGATGAAAC
CGGTAGAGTTCGAGAATATGGAGGATTTGAGGAATTTGTTTGATGTGAAC
TATTTTGGGGCTGTCTCGACGACAAAGGCCTTTCTTTCCCTCCTCCGTGA
TGGAAAAGGAAGGGTGATTAACATCAGCAGCATGGCTGGGCTGTTTTCCG
CACCCATGATGATGAGCTATTGCGGGAGTAAGTTTGCATTGGAAGCCTTC
TCGGATACGTTGAGAGTGGAGGTGCAGAAGCATGGTGTGTCGGTCTCAGT
GGTAGAGCCCGCCTATGTCCAGAGTGCCATTTTCGGTAAAAACGACGCGG
CAATGGCGAAAATCAAGGAGAGGGCTGGGTCGCAGGTAAGTGTATGA
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Synonyms
Publications