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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:439608..442570 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01470.1 vs.
Match: EWM21812.1 (Peptidase aspartic [Nannochloropsis gaditana]) HSP 1 Score: 263.8 bits (673), Expect = 1.900e-66 Identity = 142/245 (57.96%), Postives = 165/245 (67.35%), Query Frame = 0
Query: 1 MTITIPLRRRASARGRRRRRRHRIPLSSRPQPQQGDRWLQEGESSPHLPPSTAYSLVTTGGSHFLTLAVGTPPQPQAVIVDTGSTLTAFGCVPGCDFGCGTHTYPFFALDKSSSARTLTCGECGTQCLDDKCLVSQRYSEGSSWRAFSVEDRVGLMGMGGTRSAGQQQADDSAASGANDTIPFVFGCQTKLTGLFVPQKENGIMGLSRGPENFISRLKAAGKIPRASFSICFDEDEEDGGRIMIG 246
++ +PLRRR RRR R R PL R + L +SS P L TTGGSH++TL +GTPPQ QAVIVDTGS AFGC PGCD CG H +PFFA ++SSSAR L CGEC TQCLDD CLV+Q YSEGS+WRAFSVED VG GTR A + T+PFVFGCQTKLTGLFVPQ ENGIMGLSRGPEN +S ++AAG+IPRA+FS+CF E DGG + +G
Sbjct: 14 VSAVLPLRRRVPPAARRRHDRRR-PLPWRRGQAALSQSLTTSDSSLIFP------LSTTGGSHYVTLEIGTPPQAQAVIVDTGSAWVAFGCAPGCDMYCGEHVHPFFAYNESSSARILKCGECSTQCLDDLCLVTQHYSEGSAWRAFSVEDSVGFHTEPGTRQA--------PTNVPPTTVPFVFGCQTKLTGLFVPQLENGIMGLSRGPENLVSHMRAAGRIPRAAFSLCFHEHPNDGGWMTVG 243
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01470.1 ID=NO13G01470.1|Name=NO13G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2863bp ACAGGCCACAAACAAGATATATACCAAAGCCTCGGCGGGCTGGCCATGGA CCTGGCTCGCTAAAACAAAACCCGCGACGAAGGCGGCCCACAGCAGCATC AACTTGAACGCCCACGCGCCTGCACCCACCACCAAGATGACCATTACCAT TCCCTTGCGACGCCGCGCCTCTGCTCGCGGACGTCGCCGTCGTCGTCGTC ACCGCATTCCTCTTTCCTCCCGACCACAACCCCAGCAGGGGGATCGCTGG CTCCAAGAAGGCGAATCCAGCCCACACCTTCCTCCCTCTACAGCCTACTC CTTGGTAACGACAGGGGGGAGTCATTTCCTAACCCTAGCCGTAGGGACGC CACCACAGCCACAGGCCGTCATTGTGGATACGGGTAGTACCTTAACGGCA TTCGGGTGTGTGCCAGGGTGCGATTTTGGGTGTGGTACCCATACTTACCC CTTTTTTGCGTTGGACAAGAGTAGTTCGGCGCGGACGCTGACGTGTGGGG AATGCGGGACACAGTGCTTAGATGATAAATGTCTAGTATCCCAAAGATAC TCGGAGGGGAGTTCGTGGCGGGCCTTTTCGGTGGAGGATCGCGTTGGCTT GATGGGGATGGGAGGGACGAGGAGTGCCGGCCAGCAGCAGGCTGACGACA GTGCTGCCAGCGGTGCTAATGACACAATTCCGTTTGTGTTTGGATGCCAG ACCAAGCTCACAGGCCTCTTCGTCCCCCAGAAAGAGAATGGCATCATGGG TCTGTCCCGCGGTCCGGAAAATTTTATCTCACGACTCAAGGCTGCTGGTA AAATTCCCCGTGCATCATTTTCCATATGCTTCGACGAAGACGAGGAGGAC GGAGGGAGGATCATGATTGGGGGTGGTGGGGGTGGGGGGGAGGAGGAAGG GAAGGCGGAAATGAAGGAGGAGGGATATGTCTTCGCCTCCCTCACTTCTT CTCCAAATGGATGGTTTCTCGTCGATCTCGCTGGTCTATCTCTGGGTGGG CGACCACTCTCCTCCCCCCTCCCTCCCTCCTTGCCTTCGTCTTCCTCTTC CCCTCCTGCTCTAACCCTTGAACGTCGTCGACATGCCTTGCTAGACTCAG GAACTACAGATACCTATCTCCTCCTCTCTGACCTCCCCTCCTTCTCATCC CTCTTCAAGCAAGCAACAAATAACAAATTGGAGTTCAATTCAGATGCTTC TTATCATCTCTCTCTGCACGAAATACTTCTGTTGCCCAGCCTGGAAGTGG AATTCAGGAAGGAGGAAGGGGAGGACGGGAAAGAGGAAGGGGTGGTGAAA TTAGTGATACCACCATTGTCTTACATGGAAGAAATAGGCGTGAAGGGCCA AGAGAAGGGAGAGAAGGAGGAGAGCATGTGGGACGGAGGGAGGAGACAAG GGGTGTGGGTGCCGAGGGTGTACTTTACGGAGAGGTCGTTGATAATCTTG GGGTCCAATGCGATGAGAGGACACGATATCCTTTTTGATATGGAGGGAGA GAGGGTTGGGCTGAGGCGGGTAGTTTCTTGTTCCTACAGAAGATATAAGG CGAGAAATGGAGGAAGGTGTGCGGAAATGTGCACTGCTCCTGTCACTGGC CGCGGTGGCTCGGTAACTGCCGTCTGTGGAGTGGATGGAGAGAGCTACGG GTCTACTTGCGAGGCTGCATGTGTGTTGGGAAGCAGTGGAACTGGCAGCA ACAACAGGATTTATAGCAGCAGTAGTAGTAACTCTAGCAGTATCGGAAAT GAAGCGACGGATACACTGCTTCTTTGGGATGATGGACCTTGCCCTTCCTT TCAACAGCAGCAGCAGCAGCAGCAGCTTCAGCAGAGAAAGGAGGAGGACG AGGACGTCCAAGCTGCTATAACAGTCGCTCGACGCCAACAGTATCGGTCC CTGCTCTTTTCGGGTGCCCCCGGATGCATCGAGATCGCACGTGCCTTGCT GTTGCGTCCGAAGGCGGAAGGGAAGGAGGGAGGGACGGGAAAAGATCTCC CTTCTCCCTCGCTTATGTGCAACAATCCCTGCTTCGAAGCTGCCCAGTGG ATAAACCAACAAGAAAATTCAGCAGCAGCGACAGCGGCGGCATCGACATC GGCATCAAACTCATTAGTGGAACACCTTCCCCTCGATTTCTGCGCGCGAA ATCACGAGGGGAAATACTGCCAAGAAATCTACACTACCATTCTCCATACG AACAGCGTATCGTTTTCCTCCTCCTCCTCCTCCTCCTCATTCTCTGCCTC TTTCACTACATCCTCGTCCAGTCTATGCCAGGCACTCCAAAACATGGGCT GCTGCTTCCACCACCTTCTACCCCGTTTTGCCCTCTCACAGAACACCACC ACCCATCTCCTTCACTCTTGCCCACCTCCTCCGTCCCACCTTCATGCCTG CACCTCCCCACCAAGCGCACTCTTCCGTCAAAACCCCTCCTCCTCTGCCT CCTCCTCTTCCTCCTTTCTTGCTTGGTGTAACAGTCTCTCGGCGGCAGAG TTGGTTCTTGTTAGCAGTTTTAGTCTACTCTCTTTACTTTTACTTGTTGT CGCGAGTCGATGGACCCATACCCTGGCCTTACCCTTGCCTTTAATTTCAA GGGGAGGAGATCAATGGCGGCAACAACAGCAACGGCATCAGCAGCAGCAG CAACGTCGACGTCTTGCTACTGCTCGTACTGTTGAGGAAGAAAAGAAAAA AGTAAGGGGAGGAGATATTGGAGAGCGGGCAAGGCTGACGATGACGCCAA AGGAAATGGTTGAAAAGAATTATGAGACCGTCATCTTTGTATAGGAGCAT AAACTGTAAGAAGGACAAAAAGAACGAGTAAGTCAGAAGAAATAAAGCAA AACATTGTGCAAG back to topprotein sequence of NO13G01470.1 >NO13G01470.1-protein ID=NO13G01470.1-protein|Name=NO13G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=886bp MTITIPLRRRASARGRRRRRRHRIPLSSRPQPQQGDRWLQEGESSPHLPP STAYSLVTTGGSHFLTLAVGTPPQPQAVIVDTGSTLTAFGCVPGCDFGCG THTYPFFALDKSSSARTLTCGECGTQCLDDKCLVSQRYSEGSSWRAFSVE DRVGLMGMGGTRSAGQQQADDSAASGANDTIPFVFGCQTKLTGLFVPQKE NGIMGLSRGPENFISRLKAAGKIPRASFSICFDEDEEDGGRIMIGGGGGG GEEEGKAEMKEEGYVFASLTSSPNGWFLVDLAGLSLGGRPLSSPLPPSLP SSSSSPPALTLERRRHALLDSGTTDTYLLLSDLPSFSSLFKQATNNKLEF NSDASYHLSLHEILLLPSLEVEFRKEEGEDGKEEGVVKLVIPPLSYMEEI GVKGQEKGEKEESMWDGGRRQGVWVPRVYFTERSLIILGSNAMRGHDILF DMEGERVGLRRVVSCSYRRYKARNGGRCAEMCTAPVTGRGGSVTAVCGVD GESYGSTCEAACVLGSSGTGSNNRIYSSSSSNSSSIGNEATDTLLLWDDG PCPSFQQQQQQQQLQQRKEEDEDVQAAITVARRQQYRSLLFSGAPGCIEI ARALLLRPKAEGKEGGTGKDLPSPSLMCNNPCFEAAQWINQQENSAAATA AASTSASNSLVEHLPLDFCARNHEGKYCQEIYTTILHTNSVSFSSSSSSS SFSASFTTSSSSLCQALQNMGCCFHHLLPRFALSQNTTTHLLHSCPPPPS HLHACTSPPSALFRQNPSSSASSSSSFLAWCNSLSAAELVLVSSFSLLSL LLLVVASRWTHTLALPLPLISRGGDQWRQQQQRHQQQQQRRRLATARTVE EEKKKVRGGDIGERARLTMTPKEMVEKNYETVIFV* back to topmRNA from alignment at chr13:439608..442570- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01470.1 ID=NO13G01470.1|Name=NO13G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2963bp|location=Sequence derived from alignment at chr13:439608..442570- (Nannochloropsis oceanica) ACAGGCCACAAACAAGATATATACCAAAGCCTCGGCGGGCTGGCCATGGA
CCTGGCTCGCTAAAACAAAACCCGCGACGAAGGCGGCCCACAGCAGCATC
AACTTGAACGCCCACGCGCCTGCACCCACCACCAAGATGACCATTACCAT
TCCCTTGCGACGCCGCGCCTCTGCTCGCGGACGTCGCCGTCGTCGTCGTC
ACCGCATTCCTCTTTCCTCCCGACCACAACCCCAGCAGGGGGATCGCTGG
CTCCAAGAAGGCGAATCCAGCCCACACCTTCCTCCCTCTACAGCCTACTC
CTTGGTAACGACAGGGGGGAGTCATTTCCTAACCCTAGCCGTAGGGACGC
CACCACAGCCACAGGCCGTCATTGTGGATACGGGTAGTACCTTAACGGCA
TTCGGGTGTGTGCCAGGGTGCGATTTTGGGTGTGGTACCCATACTTACCC
CTTTTTTGCGTTGGACAAGAGTAGTTCGGCGCGGACGCTGACGTGTGGGG
AATGCGGGACACAGTGCTTAGATGATAAATGTCTAGTATCCCAAAGATAC
TCGGAGGGGAGTTCGTGGCGGGCCTTTTCGGTGGAGGATCGCGTTGGCTT
GATGGGGATGGGAGGGACGAGGAGTGCCGGCCAGCAGCAGGCTGACGACA
GTGCTGCCAGCGGTGCTAATGACACAATTCCGTTTGTGTTTGGATGCCAG
ACCAAGCTCACGTACGTTTTCAAAAGGCCTACTTCAAGTGGATTCAGCTT
ATGTACACTGCATTGGTTTGTCGCACTCACCTATCTTTTTTCCTCCCTCC
CTTTCCTCTAGAGGCCTCTTCGTCCCCCAGAAAGAGAATGGCATCATGGG
TCTGTCCCGCGGTCCGGAAAATTTTATCTCACGACTCAAGGCTGCTGGTA
AAATTCCCCGTGCATCATTTTCCATATGCTTCGACGAAGACGAGGAGGAC
GGAGGGAGGATCATGATTGGGGGTGGTGGGGGTGGGGGGGAGGAGGAAGG
GAAGGCGGAAATGAAGGAGGAGGGATATGTCTTCGCCTCCCTCACTTCTT
CTCCAAATGGATGGTTTCTCGTCGATCTCGCTGGTCTATCTCTGGGTGGG
CGACCACTCTCCTCCCCCCTCCCTCCCTCCTTGCCTTCGTCTTCCTCTTC
CCCTCCTGCTCTAACCCTTGAACGTCGTCGACATGCCTTGCTAGACTCAG
GAACTACAGATACCTATCTCCTCCTCTCTGACCTCCCCTCCTTCTCATCC
CTCTTCAAGCAAGCAACAAATAACAAATTGGAGTTCAATTCAGATGCTTC
TTATCATCTCTCTCTGCACGAAATACTTCTGTTGCCCAGCCTGGAAGTGG
AATTCAGGAAGGAGGAAGGGGAGGACGGGAAAGAGGAAGGGGTGGTGAAA
TTAGTGATACCACCATTGTCTTACATGGAAGAAATAGGCGTGAAGGGCCA
AGAGAAGGGAGAGAAGGAGGAGAGCATGTGGGACGGAGGGAGGAGACAAG
GGGTGTGGGTGCCGAGGGTGTACTTTACGGAGAGGTCGTTGATAATCTTG
GGGTCCAATGCGATGAGAGGACACGATATCCTTTTTGATATGGAGGGAGA
GAGGGTTGGGCTGAGGCGGGTAGTTTCTTGTTCCTACAGAAGATATAAGG
CGAGAAATGGAGGAAGGTGTGCGGAAATGTGCACTGCTCCTGTCACTGGC
CGCGGTGGCTCGGTAACTGCCGTCTGTGGAGTGGATGGAGAGAGCTACGG
GTCTACTTGCGAGGCTGCATGTGTGTTGGGAAGCAGTGGAACTGGCAGCA
ACAACAGGATTTATAGCAGCAGTAGTAGTAACTCTAGCAGTATCGGAAAT
GAAGCGACGGATACACTGCTTCTTTGGGATGATGGACCTTGCCCTTCCTT
TCAACAGCAGCAGCAGCAGCAGCAGCTTCAGCAGAGAAAGGAGGAGGACG
AGGACGTCCAAGCTGCTATAACAGTCGCTCGACGCCAACAGTATCGGTCC
CTGCTCTTTTCGGGTGCCCCCGGATGCATCGAGATCGCACGTGCCTTGCT
GTTGCGTCCGAAGGCGGAAGGGAAGGAGGGAGGGACGGGAAAAGATCTCC
CTTCTCCCTCGCTTATGTGCAACAATCCCTGCTTCGAAGCTGCCCAGTGG
ATAAACCAACAAGAAAATTCAGCAGCAGCGACAGCGGCGGCATCGACATC
GGCATCAAACTCATTAGTGGAACACCTTCCCCTCGATTTCTGCGCGCGAA
ATCACGAGGGGAAATACTGCCAAGAAATCTACACTACCATTCTCCATACG
AACAGCGTATCGTTTTCCTCCTCCTCCTCCTCCTCCTCATTCTCTGCCTC
TTTCACTACATCCTCGTCCAGTCTATGCCAGGCACTCCAAAACATGGGCT
GCTGCTTCCACCACCTTCTACCCCGTTTTGCCCTCTCACAGAACACCACC
ACCCATCTCCTTCACTCTTGCCCACCTCCTCCGTCCCACCTTCATGCCTG
CACCTCCCCACCAAGCGCACTCTTCCGTCAAAACCCCTCCTCCTCTGCCT
CCTCCTCTTCCTCCTTTCTTGCTTGGTGTAACAGTCTCTCGGCGGCAGAG
TTGGTTCTTGTTAGCAGTTTTAGTCTACTCTCTTTACTTTTACTTGTTGT
CGCGAGTCGATGGACCCATACCCTGGCCTTACCCTTGCCTTTAATTTCAA
GGGGAGGAGATCAATGGCGGCAACAACAGCAACGGCATCAGCAGCAGCAG
CAACGTCGACGTCTTGCTACTGCTCGTACTGTTGAGGAAGAAAAGAAAAA
AGTAAGGGGAGGAGATATTGGAGAGCGGGCAAGGCTGACGATGACGCCAA
AGGAAATGGTTGAAAAGAATTATGAGACCGTCATCTTTGTATAGGAGCAT
AAACTGTAAGAAGGACAAAAAGAACGAGTAAGTCAGAAGAAATAAAGCAA
AACATTGTGCAAG back to topCoding sequence (CDS) from alignment at chr13:439608..442570- >NO13G01470.1 ID=NO13G01470.1|Name=NO13G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=2658bp|location=Sequence derived from alignment at chr13:439608..442570- (Nannochloropsis oceanica) ATGACCATTACCATTCCCTTGCGACGCCGCGCCTCTGCTCGCGGACGTCG CCGTCGTCGTCGTCACCGCATTCCTCTTTCCTCCCGACCACAACCCCAGC AGGGGGATCGCTGGCTCCAAGAAGGCGAATCCAGCCCACACCTTCCTCCC TCTACAGCCTACTCCTTGGTAACGACAGGGGGGAGTCATTTCCTAACCCT AGCCGTAGGGACGCCACCACAGCCACAGGCCGTCATTGTGGATACGGGTA GTACCTTAACGGCATTCGGGTGTGTGCCAGGGTGCGATTTTGGGTGTGGT ACCCATACTTACCCCTTTTTTGCGTTGGACAAGAGTAGTTCGGCGCGGAC GCTGACGTGTGGGGAATGCGGGACACAGTGCTTAGATGATAAATGTCTAG TATCCCAAAGATACTCGGAGGGGAGTTCGTGGCGGGCCTTTTCGGTGGAG GATCGCGTTGGCTTGATGGGGATGGGAGGGACGAGGAGTGCCGGCCAGCA GCAGGCTGACGACAGTGCTGCCAGCGGTGCTAATGACACAATTCCGTTTG TGTTTGGATGCCAGACCAAGCTCACAGGCCTCTTCGTCCCCCAGAAAGAG AATGGCATCATGGGTCTGTCCCGCGGTCCGGAAAATTTTATCTCACGACT CAAGGCTGCTGGTAAAATTCCCCGTGCATCATTTTCCATATGCTTCGACG AAGACGAGGAGGACGGAGGGAGGATCATGATTGGGGGTGGTGGGGGTGGG GGGGAGGAGGAAGGGAAGGCGGAAATGAAGGAGGAGGGATATGTCTTCGC CTCCCTCACTTCTTCTCCAAATGGATGGTTTCTCGTCGATCTCGCTGGTC TATCTCTGGGTGGGCGACCACTCTCCTCCCCCCTCCCTCCCTCCTTGCCT TCGTCTTCCTCTTCCCCTCCTGCTCTAACCCTTGAACGTCGTCGACATGC CTTGCTAGACTCAGGAACTACAGATACCTATCTCCTCCTCTCTGACCTCC CCTCCTTCTCATCCCTCTTCAAGCAAGCAACAAATAACAAATTGGAGTTC AATTCAGATGCTTCTTATCATCTCTCTCTGCACGAAATACTTCTGTTGCC CAGCCTGGAAGTGGAATTCAGGAAGGAGGAAGGGGAGGACGGGAAAGAGG AAGGGGTGGTGAAATTAGTGATACCACCATTGTCTTACATGGAAGAAATA GGCGTGAAGGGCCAAGAGAAGGGAGAGAAGGAGGAGAGCATGTGGGACGG AGGGAGGAGACAAGGGGTGTGGGTGCCGAGGGTGTACTTTACGGAGAGGT CGTTGATAATCTTGGGGTCCAATGCGATGAGAGGACACGATATCCTTTTT GATATGGAGGGAGAGAGGGTTGGGCTGAGGCGGGTAGTTTCTTGTTCCTA CAGAAGATATAAGGCGAGAAATGGAGGAAGGTGTGCGGAAATGTGCACTG CTCCTGTCACTGGCCGCGGTGGCTCGGTAACTGCCGTCTGTGGAGTGGAT GGAGAGAGCTACGGGTCTACTTGCGAGGCTGCATGTGTGTTGGGAAGCAG TGGAACTGGCAGCAACAACAGGATTTATAGCAGCAGTAGTAGTAACTCTA GCAGTATCGGAAATGAAGCGACGGATACACTGCTTCTTTGGGATGATGGA CCTTGCCCTTCCTTTCAACAGCAGCAGCAGCAGCAGCAGCTTCAGCAGAG AAAGGAGGAGGACGAGGACGTCCAAGCTGCTATAACAGTCGCTCGACGCC AACAGTATCGGTCCCTGCTCTTTTCGGGTGCCCCCGGATGCATCGAGATC GCACGTGCCTTGCTGTTGCGTCCGAAGGCGGAAGGGAAGGAGGGAGGGAC GGGAAAAGATCTCCCTTCTCCCTCGCTTATGTGCAACAATCCCTGCTTCG AAGCTGCCCAGTGGATAAACCAACAAGAAAATTCAGCAGCAGCGACAGCG GCGGCATCGACATCGGCATCAAACTCATTAGTGGAACACCTTCCCCTCGA TTTCTGCGCGCGAAATCACGAGGGGAAATACTGCCAAGAAATCTACACTA CCATTCTCCATACGAACAGCGTATCGTTTTCCTCCTCCTCCTCCTCCTCC TCATTCTCTGCCTCTTTCACTACATCCTCGTCCAGTCTATGCCAGGCACT CCAAAACATGGGCTGCTGCTTCCACCACCTTCTACCCCGTTTTGCCCTCT CACAGAACACCACCACCCATCTCCTTCACTCTTGCCCACCTCCTCCGTCC CACCTTCATGCCTGCACCTCCCCACCAAGCGCACTCTTCCGTCAAAACCC CTCCTCCTCTGCCTCCTCCTCTTCCTCCTTTCTTGCTTGGTGTAACAGTC TCTCGGCGGCAGAGTTGGTTCTTGTTAGCAGTTTTAGTCTACTCTCTTTA CTTTTACTTGTTGTCGCGAGTCGATGGACCCATACCCTGGCCTTACCCTT GCCTTTAATTTCAAGGGGAGGAGATCAATGGCGGCAACAACAGCAACGGC ATCAGCAGCAGCAGCAACGTCGACGTCTTGCTACTGCTCGTACTGTTGAG GAAGAAAAGAAAAAAGTAAGGGGAGGAGATATTGGAGAGCGGGCAAGGCT GACGATGACGCCAAAGGAAATGGTTGAAAAGAATTATGAGACCGTCATCT TTGTATAG back to top
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