NO13G01440.1, NO13G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01440.1
Unique NameNO13G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length658
Alignment locationchr13:432340..433393 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:432340..433393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G01440.1 vs.
Match: XP_005853660.1 (hypothetical protein NGA_0273502 [Nannochloropsis gaditana CCMP526]; EKU22701.1 hypothetical protein NGA_0273502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.6 bits (366), Expect = 1.200e-31
Identity = 92/149 (61.74%), Postives = 107/149 (71.81%), Query Frame = 0 
Query:    1 MAGCRAYTELEAEKLTCEIVELENSVMHLKRSNQELTDALASSPEDTDFQEAIKENTGVIQRKENLLEELKKELCTHKSMLVTALGAAEARQLPAAIAIENEAAASGRQAASIATEAARAAQA-RAAPNQATPDQQQPEEEGKEGGVYL 149
            MAGCRA+ E+EAEKLTCEIVELENS+ HL RSN+EL  ALAS P+D DF+EA+ EN  VIQRK+ LLEELKKEL  H+S++VTALGAAEARQLPAAIA+E        Q  S +T A  +  A R  PN+     Q  EEE K  GVYL
Sbjct:    1 MAGCRAHNEVEAEKLTCEIVELENSIAHLTRSNEELAMALASDPDDKDFREAVTENVSVIQRKKKLLEELKKELKAHRSLMVTALGAAEARQLPAAIALET-------QRPSTSTGAILSLPAERMNPNEG----QAVEEEEKFEGVYL 138
The following BLAST results are available for this feature:
BLAST of NO13G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853660.11.200e-3161.74hypothetical protein NGA_0273502 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01440NO13G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01440.1NO13G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01440.1.cds1NO13G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01440.1.cds2NO13G01440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01440.1 ID=NO13G01440.1|Name=NO13G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=658bp
ACAGGCCAGGCCTTGTTAAGCGCGCGGTTTTCGCCTTTCGAAGCAAGCAC
CCATACACGTACGACAATATATTCACACAGCCAAAACCTCCTCACTCTCA
TAAGGCGTCTATCCCCTCTACGCCCCTTCAGCACCCGTCCAAAACAATGG
CCGGATGTCGTGCCTACACCGAACTGGAAGCGGAAAAGCTAACTTGTGAA
ATTGTGGAGCTCGAGAACTCAGTCATGCATTTGAAACGCTCCAATCAAGA
ACTCACCGACGCCCTAGCCTCCTCCCCAGAAGATACCGACTTCCAAGAGG
CCATCAAAGAAAATACGGGTGTTATCCAGAGAAAGGAAAATCTCCTCGAA
GAGCTGAAGAAGGAACTATGTACCCACAAAAGCATGCTCGTCACGGCCTT
GGGCGCAGCAGAAGCCCGGCAGCTCCCTGCGGCGATAGCGATTGAAAACG
AGGCGGCAGCATCAGGTAGGCAAGCAGCTTCAATAGCGACAGAGGCAGCA
CGTGCAGCGCAAGCAAGAGCAGCGCCCAACCAAGCTACGCCGGACCAGCA
GCAGCCCGAGGAAGAGGGAAAGGAAGGTGGGGTTTACCTTTGAGGACCAT
GTTAAAAAACGAAAAGCGAATACAAAGAAACCAAGTGAGAAGATGTCAAA
CAGTATAT
back to top

protein sequence of NO13G01440.1

>NO13G01440.1-protein ID=NO13G01440.1-protein|Name=NO13G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MAGCRAYTELEAEKLTCEIVELENSVMHLKRSNQELTDALASSPEDTDFQ
EAIKENTGVIQRKENLLEELKKELCTHKSMLVTALGAAEARQLPAAIAIE
NEAAASGRQAASIATEAARAAQARAAPNQATPDQQQPEEEGKEGGVYL*
back to top

mRNA from alignment at chr13:432340..433393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01440.1 ID=NO13G01440.1|Name=NO13G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp|location=Sequence derived from alignment at chr13:432340..433393- (Nannochloropsis oceanica)
ACAGGCCAGGCCTTGTTAAGCGCGCGGTTTTCGCCTTTCGAAGCAAGCAC
CCATACACGTACGACAATATATTCACACAGCCAAAACCTCCTCACTCTCA
TAAGGCGTCTATCCCCTCTACGCCCCTTCAGCACCCGTCCAAAACAATGG
CCGGATGTCGTGCCTACACCGAACTGGAAGCGGAAAAGCTAACTTGTGAA
ATTGTGGAGCTCGAGAACTCAGTCATGCATTTGGTAAGTTTGCGATGGTG
TCCTGGGGTACTACGAGTGAGGGCGGTTTGGGGGGAAGGAGAAATTGTTC
TTTCCTAACTATTTGCCTTGCGTGGCAATCTATCCAAGACATGGACGCTC
TCTAAATCGATCACGGAAGTTACTCGCGGCAAAATGTTGATATCCGCGGA
CTGCCGTGCATGTCTGTATCGTCTGTCTCATGTCTCCTCTTGTGCGGCGG
CCAGCATGTCGTTTGCGCCACCCTCGAAGGGCGGTTTCGTACCTTACCTC
ACGCTGCGACACTGCCTATATTTGCCCCCACTTCTACCGTTTGTATATAC
CCATTATCGCTACCTATATGTACACTCCCTCTCCGTACGAGTCAATGTTC
ATCTTCTTCCCCACTACAAAAACAAACAGAAACGCTCCAATCAAGAACTC
ACCGACGCCCTAGCCTCCTCCCCAGAAGATACCGACTTCCAAGAGGCCAT
CAAAGAAAATACGGGTGTTATCCAGAGAAAGGAAAATCTCCTCGAAGAGC
TGAAGAAGGAACTATGTACCCACAAAAGCATGCTCGTCACGGCCTTGGGC
GCAGCAGAAGCCCGGCAGCTCCCTGCGGCGATAGCGATTGAAAACGAGGC
GGCAGCATCAGGTAGGCAAGCAGCTTCAATAGCGACAGAGGCAGCACGTG
CAGCGCAAGCAAGAGCAGCGCCCAACCAAGCTACGCCGGACCAGCAGCAG
CCCGAGGAAGAGGGAAAGGAAGGTGGGGTTTACCTTTGAGGACCATGTTA
AAAAACGAAAAGCGAATACAAAGAAACCAAGTGAGAAGATGTCAAACAGT
ATAT
back to top

Coding sequence (CDS) from alignment at chr13:432340..433393-

>NO13G01440.1 ID=NO13G01440.1|Name=NO13G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr13:432340..433393- (Nannochloropsis oceanica)
ATGGCCGGATGTCGTGCCTACACCGAACTGGAAGCGGAAAAGCTAACTTG
TGAAATTGTGGAGCTCGAGAACTCAGTCATGCATTTGAAACGCTCCAATC
AAGAACTCACCGACGCCCTAGCCTCCTCCCCAGAAGATACCGACTTCCAA
GAGGCCATCAAAGAAAATACGGGTGTTATCCAGAGAAAGGAAAATCTCCT
CGAAGAGCTGAAGAAGGAACTATGTACCCACAAAAGCATGCTCGTCACGG
CCTTGGGCGCAGCAGAAGCCCGGCAGCTCCCTGCGGCGATAGCGATTGAA
AACGAGGCGGCAGCATCAGGTAGGCAAGCAGCTTCAATAGCGACAGAGGC
AGCACGTGCAGCGCAAGCAAGAGCAGCGCCCAACCAAGCTACGCCGGACC
AGCAGCAGCCCGAGGAAGAGGGAAAGGAAGGTGGGGTTTACCTTTGA
back to top
Synonyms
Publications