NO13G01430.1, NO13G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01430.1
Unique NameNO13G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1009
Alignment locationchr13:431305..432313 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:431305..432313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01430.1 vs.
Match: XP_005853662.1 (lysophospholipase II [Nannochloropsis gaditana CCMP526]; EKU22703.1 lysophospholipase II [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 416.0 bits (1068), Expect = 9.100e-113
Identity = 188/230 (81.74%), Postives = 215/230 (93.48%), Query Frame = 0 
Query:   45 MTHKASRNDNYGGAGVTLNPIAGPAQSSIVWMHGLGDSGEGWSGAFNPALFPSTRLIFPTAPTRPISLNGGFPMPGWFDINGLDESSPEDKVGFEEAKKRIEGIVAGEMAAGVPAERIILGGFSQGGAVTLHVALRSKVKLGGAVVLSGWLPLKADYPAALTETGKSMAYFHGHGDADGVVRYQWGQHSAEKMKELGLDYTFKTYRGLDHGATPEEMRDATTFMKAILEK 275
            MTH+ASRNDN GGAG+TLNP+ GPAQSSI+WMHGLGDSGEGW+GAF+P +FP+TR+IFPTAPTRPI+LNGGFPMPGWFDINGLDESSPED+ GFEEAK+RI  IV GE+ AGVPA++I+LGGFSQGGAVTLH+ALRS+V+LGGAV+LSGWLPLKADYPAALT+ GK+M YFHGHGDADG+VR+QWGQHSAEK+KELGL+YTFKTYRGLDHGATPEEM+DA  FMK I  K
Sbjct:    1 MTHRASRNDNVGGAGITLNPVGGPAQSSIIWMHGLGDSGEGWAGAFDPKVFPTTRMIFPTAPTRPITLNGGFPMPGWFDINGLDESSPEDRAGFEEAKQRIARIVQGEVEAGVPADKIVLGGFSQGGAVTLHLALRSEVRLGGAVILSGWLPLKADYPAALTDVGKTMPYFHGHGDADGIVRHQWGQHSAEKLKELGLNYTFKTYRGLDHGATPEEMKDAVAFMKEIFNK 230
The following BLAST results are available for this feature:
BLAST of NO13G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853662.19.100e-11381.74lysophospholipase II [Nannochloropsis gaditana CCM... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01430NO13G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01430.1NO13G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01430.1.cds1NO13G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01430.1 ID=NO13G01430.1|Name=NO13G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
AAAAACACAGACCCTGCTCCGTGGTCCTCCTTTGGCTGCCCTGGTGGATG
ACCCTCTCGTGGTCTCGCAGCGCCCGCCGAGCTCTTTGCATCTCTGTGTT
AGCCTCCAACAGCACGGCCAGCCTCGCCTTCGCCTACATCACGCCTAGTG
CCAACTCACGCACTCGCGGACTTTCCAGCATGACACACAAAGCTTCGCGA
AACGACAATTATGGCGGCGCTGGCGTGACACTGAACCCCATTGCCGGACC
AGCCCAATCCTCAATTGTGTGGATGCACGGACTAGGGGACAGCGGGGAAG
GATGGTCAGGCGCCTTTAATCCTGCCCTATTTCCTTCGACCCGTTTGATT
TTTCCCACGGCCCCCACCCGCCCCATTTCTTTGAATGGAGGCTTTCCGAT
GCCAGGTTGGTTTGATATCAATGGTTTGGATGAGAGCAGCCCCGAGGATA
AGGTGGGGTTTGAAGAAGCAAAGAAGAGAATCGAAGGCATCGTTGCGGGT
GAAATGGCAGCAGGCGTGCCGGCAGAGAGAATCATTCTGGGTGGTTTCTC
GCAAGGGGGAGCCGTGACACTGCATGTGGCATTGCGTAGTAAGGTGAAGT
TGGGAGGAGCTGTGGTTTTATCGGGGTGGTTGCCCCTCAAGGCGGATTAC
CCCGCAGCATTGACAGAGACAGGGAAGAGCATGGCCTATTTCCATGGGCA
TGGAGATGCGGATGGTGTGGTGAGGTACCAGTGGGGGCAGCATAGTGCGG
AGAAAATGAAGGAGCTTGGGTTGGATTACACATTTAAGACATACAGGGGC
CTGGATCATGGGGCAACTCCGGAAGAGATGCGAGACGCGACTACCTTTAT
GAAGGCAATTCTTGAAAAGTAAGATCAAAGACATTAAGGCGGAAGAAAGA
GTGAAGAACTGATATCATGGGAATAGGTTGGGGGTATGCTCTGGGCGAGA
TGGCCTTTGAGACGTAATGACATAATAGAAGGAAAGAAAGACGCTTGAGT
ACGACGGGA
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protein sequence of NO13G01430.1

>NO13G01430.1-protein ID=NO13G01430.1-protein|Name=NO13G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MTLSWSRSARRALCISVLASNSTASLAFAYITPSANSRTRGLSSMTHKAS
RNDNYGGAGVTLNPIAGPAQSSIVWMHGLGDSGEGWSGAFNPALFPSTRL
IFPTAPTRPISLNGGFPMPGWFDINGLDESSPEDKVGFEEAKKRIEGIVA
GEMAAGVPAERIILGGFSQGGAVTLHVALRSKVKLGGAVVLSGWLPLKAD
YPAALTETGKSMAYFHGHGDADGVVRYQWGQHSAEKMKELGLDYTFKTYR
GLDHGATPEEMRDATTFMKAILEK*
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mRNA from alignment at chr13:431305..432313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01430.1 ID=NO13G01430.1|Name=NO13G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp|location=Sequence derived from alignment at chr13:431305..432313+ (Nannochloropsis oceanica)
AAAAACACAGACCCTGCTCCGTGGTCCTCCTTTGGCTGCCCTGGTGGATG
ACCCTCTCGTGGTCTCGCAGCGCCCGCCGAGCTCTTTGCATCTCTGTGTT
AGCCTCCAACAGCACGGCCAGCCTCGCCTTCGCCTACATCACGCCTAGTG
CCAACTCACGCACTCGCGGACTTTCCAGCATGACACACAAAGCTTCGCGA
AACGACAATTATGGCGGCGCTGGCGTGACACTGAACCCCATTGCCGGACC
AGCCCAATCCTCAATTGTGTGGATGCACGGACTAGGGGACAGCGGGGAAG
GATGGTCAGGCGCCTTTAATCCTGCCCTATTTCCTTCGACCCGTTTGATT
TTTCCCACGGCCCCCACCCGCCCCATTTCTTTGAATGGAGGCTTTCCGAT
GCCAGGTTGGTTTGATATCAATGGTTTGGATGAGAGCAGCCCCGAGGATA
AGGTGGGGTTTGAAGAAGCAAAGAAGAGAATCGAAGGCATCGTTGCGGGT
GAAATGGCAGCAGGCGTGCCGGCAGAGAGAATCATTCTGGGTGGTTTCTC
GCAAGGGGGAGCCGTGACACTGCATGTGGCATTGCGTAGTAAGGTGAAGT
TGGGAGGAGCTGTGGTTTTATCGGGGTGGTTGCCCCTCAAGGCGGATTAC
CCCGCAGCATTGACAGAGACAGGGAAGAGCATGGCCTATTTCCATGGGCA
TGGAGATGCGGATGGTGTGGTGAGGTACCAGTGGGGGCAGCATAGTGCGG
AGAAAATGAAGGAGCTTGGGTTGGATTACACATTTAAGACATACAGGGGC
CTGGATCATGGGGCAACTCCGGAAGAGATGCGAGACGCGACTACCTTTAT
GAAGGCAATTCTTGAAAAGTAAGATCAAAGACATTAAGGCGGAAGAAAGA
GTGAAGAACTGATATCATGGGAATAGGTTGGGGGTATGCTCTGGGCGAGA
TGGCCTTTGAGACGTAATGACATAATAGAAGGAAAGAAAGACGCTTGAGT
ACGACGGGA
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Coding sequence (CDS) from alignment at chr13:431305..432313+

>NO13G01430.1 ID=NO13G01430.1|Name=NO13G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr13:431305..432313+ (Nannochloropsis oceanica)
ATGACCCTCTCGTGGTCTCGCAGCGCCCGCCGAGCTCTTTGCATCTCTGT
GTTAGCCTCCAACAGCACGGCCAGCCTCGCCTTCGCCTACATCACGCCTA
GTGCCAACTCACGCACTCGCGGACTTTCCAGCATGACACACAAAGCTTCG
CGAAACGACAATTATGGCGGCGCTGGCGTGACACTGAACCCCATTGCCGG
ACCAGCCCAATCCTCAATTGTGTGGATGCACGGACTAGGGGACAGCGGGG
AAGGATGGTCAGGCGCCTTTAATCCTGCCCTATTTCCTTCGACCCGTTTG
ATTTTTCCCACGGCCCCCACCCGCCCCATTTCTTTGAATGGAGGCTTTCC
GATGCCAGGTTGGTTTGATATCAATGGTTTGGATGAGAGCAGCCCCGAGG
ATAAGGTGGGGTTTGAAGAAGCAAAGAAGAGAATCGAAGGCATCGTTGCG
GGTGAAATGGCAGCAGGCGTGCCGGCAGAGAGAATCATTCTGGGTGGTTT
CTCGCAAGGGGGAGCCGTGACACTGCATGTGGCATTGCGTAGTAAGGTGA
AGTTGGGAGGAGCTGTGGTTTTATCGGGGTGGTTGCCCCTCAAGGCGGAT
TACCCCGCAGCATTGACAGAGACAGGGAAGAGCATGGCCTATTTCCATGG
GCATGGAGATGCGGATGGTGTGGTGAGGTACCAGTGGGGGCAGCATAGTG
CGGAGAAAATGAAGGAGCTTGGGTTGGATTACACATTTAAGACATACAGG
GGCCTGGATCATGGGGCAACTCCGGAAGAGATGCGAGACGCGACTACCTT
TATGAAGGCAATTCTTGAAAAGTAA
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Synonyms
Publications