NO13G01400.1, NO13G01400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01400.1
Unique NameNO13G01400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr13:426562..427713 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:426562..427713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01400.1 vs.
Match: XP_005853657.1 (hypothetical protein NGA_0272302 [Nannochloropsis gaditana CCMP526]; EKU22698.1 hypothetical protein NGA_0272302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 214.2 bits (544), Expect = 4.900e-52
Identity = 106/178 (59.55%), Postives = 136/178 (76.40%), Query Frame = 0
Query:   40 SSSSSSSSSSPPPQEPSP-PLRNSSMPSYCLLVISSIGVMGCGAAAGMYRAKHSTEGTEDWRKLPPSQQVKHWKVDPNSHFNPTRFAAKALAVGTVLCLSATGVAAFALGRVLNISSIDEFVSKMRVWAPAKKRELEAWLHIKPNPVVEVERRHVEKMTYDEEIEYWGDILMKEEREK 217
            S ++SS +  P P  PS  PL + S PSY LL++SS+G++GCG AAG+YRA   TEG E+WRKLPPSQQVKHWK DP++ FNPTRFA KALAVGTVLCLSATG  AF +GR + + +++EF  K++VWAPAK+RELEAWL IKPN  +E ER  +  M+Y+EEI+YW  +++ EE  K
Sbjct:   21 SLTTSSHALEPSPPTPSTKPLSSPSTPSYGLLLMSSLGIVGCGVAAGLYRANRDTEGMEEWRKLPPSQQVKHWKRDPHAEFNPTRFAGKALAVGTVLCLSATGTLAFVVGRAMGVGTVEEFTQKLKVWAPAKRRELEAWLKIKPNASLERERERLAAMSYEEEIDYWERVVVAEEEGK 198          
The following BLAST results are available for this feature:
BLAST of NO13G01400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853657.14.900e-5259.55hypothetical protein NGA_0272302 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01400NO13G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01400.1NO13G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01400.1.cds1NO13G01400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01400.1.cds2NO13G01400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01400.1 ID=NO13G01400.1|Name=NO13G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
AGGACTATGGGTACGACCACCAGTAGCCCCAGTACCGCTTCCAGCAAGTA
TGGAGCAACACTGTTTACTGAGCCTTTGGAATTTACTCCAACAACTCATG
CCTTAGCAACGAACTCCCCTCCCTCCTCCTCGTCCTCCTCCTCCTCCTCC
TCACCACCACCACAAGAGCCATCACCACCACTCCGCAACTCGTCCATGCC
TTCCTACTGCCTCTTAGTCATATCCTCGATAGGTGTCATGGGCTGTGGTG
CGGCTGCGGGCATGTACCGGGCCAAACACAGCACCGAGGGGACTGAAGAC
TGGCGGAAGCTGCCTCCAAGTCAGCAGGTCAAACACTGGAAAGTAGACCC
AAACAGCCACTTTAATCCCACCCGCTTCGCGGCCAAGGCCCTTGCGGTGG
GTACTGTTTTGTGCCTGAGCGCTACGGGTGTTGCTGCTTTCGCGTTGGGA
CGTGTATTGAACATTAGCTCCATCGATGAGTTCGTCAGTAAAATGCGCGT
GTGGGCGCCCGCGAAAAAAAGGGAGTTGGAGGCATGGTTACATATCAAAC
CAAACCCAGTGGTGGAGGTGGAGAGGAGGCATGTGGAGAAAATGACGTAT
GACGAGGAGATAGAGTATTGGGGGGATATCTTGATGAAGGAGGAGAGGGA
GAAGAAGGTGAGAGAGATAGCAGAAGCAGGAGCAGTGGGTGTTGCAGGAG
GGGTTCGCTCTATCAAAGAAGGGAGGAAGCAGCAGCAACAGCAGCAGCAG
TGGTGGAGATGGCCTTGGCGGACGAAAGGATGATTTGAAAAAAAGGGGCG
ACGGATTAGTAGGTTTGTTTATAGATATGTGTGAATACAGGAAAAGGAGA
CGAAAAGGCTTAGGGGAGAGTTCTCAATGGACGTAGTCCTATGTAGGCAA
AACAATGACAAATGAAATTAAAGTTATGAGAGAATCAAAGGACAGATAGA
AAGATAGAAAGAGAGATCATAGGATGCATTAATGTTTCCAATGCCTTGAA
ACGAG
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protein sequence of NO13G01400.1

>NO13G01400.1-protein ID=NO13G01400.1-protein|Name=NO13G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MGTTTSSPSTASSKYGATLFTEPLEFTPTTHALATNSPPSSSSSSSSSSP
PPQEPSPPLRNSSMPSYCLLVISSIGVMGCGAAAGMYRAKHSTEGTEDWR
KLPPSQQVKHWKVDPNSHFNPTRFAAKALAVGTVLCLSATGVAAFALGRV
LNISSIDEFVSKMRVWAPAKKRELEAWLHIKPNPVVEVERRHVEKMTYDE
EIEYWGDILMKEEREKKVREIAEAGAVGVAGGVRSIKEGRKQQQQQQQWW
RWPWRTKG*
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mRNA from alignment at chr13:426562..427713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01400.1 ID=NO13G01400.1|Name=NO13G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp|location=Sequence derived from alignment at chr13:426562..427713- (Nannochloropsis oceanica)
AGGACTATGGGTACGACCACCAGTAGCCCCAGTACCGCTTCCAGCAAGTA TGGAGCAACACTGTTTACTGAGCCTTTGGAATTTACTCCAACAACTCATG CCTTAGCAACGAACTCCCCTCCCTCCTCCTCGTCCTCCTCCTCCTCCTCC TCACCACCACCACAAGAGCCATCACCACCACTCCGCAACTCGTCCATGCC TTCCTACTGCCTCTTAGTCATATCCTCGATAGGTGTCATGGGCTGTGGTG CGGCTGCGGGCATGTACCGGGCCAAACACAGCACCGAGGGGACTGAAGAC TGGCGGAAGCTGCCTCCAAGTCAGCAGGTCAAACACTGGAAAGTGTACGT ATTTTGCCAAGGAAGATGTGAGAGTAGGGTTAGAGAAAAGAAAGGAGAAA AGGGTTGAAAAGAAACGAGACGAATTTTCCATTCTCGTAGCCTGTCCTTG AATTTACATATCACCCATTCAGCCTCCCTTCCCATACACAGAGACCCAAA CAGCCACTTTAATCCCACCCGCTTCGCGGCCAAGGCCCTTGCGGTGGGTA CTGTTTTGTGCCTGAGCGCTACGGGTGTTGCTGCTTTCGCGTTGGGACGT GTATTGAACATTAGCTCCATCGATGAGTTCGTCAGTAAAATGCGCGTGTG GGCGCCCGCGAAAAAAAGGGAGTTGGAGGCATGGTTACATATCAAACCAA ACCCAGTGGTGGAGGTGGAGAGGAGGCATGTGGAGAAAATGACGTATGAC GAGGAGATAGAGTATTGGGGGGATATCTTGATGAAGGAGGAGAGGGAGAA GAAGGTGAGAGAGATAGCAGAAGCAGGAGCAGTGGGTGTTGCAGGAGGGG TTCGCTCTATCAAAGAAGGGAGGAAGCAGCAGCAACAGCAGCAGCAGTGG TGGAGATGGCCTTGGCGGACGAAAGGATGATTTGAAAAAAAGGGGCGACG GATTAGTAGGTTTGTTTATAGATATGTGTGAATACAGGAAAAGGAGACGA AAAGGCTTAGGGGAGAGTTCTCAATGGACGTAGTCCTATGTAGGCAAAAC AATGACAAATGAAATTAAAGTTATGAGAGAATCAAAGGACAGATAGAAAG ATAGAAAGAGAGATCATAGGATGCATTAATGTTTCCAATGCCTTGAAACG AG
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Coding sequence (CDS) from alignment at chr13:426562..427713-

>NO13G01400.1 ID=NO13G01400.1|Name=NO13G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr13:426562..427713- (Nannochloropsis oceanica)
ATGGGTACGACCACCAGTAGCCCCAGTACCGCTTCCAGCAAGTATGGAGC
AACACTGTTTACTGAGCCTTTGGAATTTACTCCAACAACTCATGCCTTAG
CAACGAACTCCCCTCCCTCCTCCTCGTCCTCCTCCTCCTCCTCCTCACCA
CCACCACAAGAGCCATCACCACCACTCCGCAACTCGTCCATGCCTTCCTA
CTGCCTCTTAGTCATATCCTCGATAGGTGTCATGGGCTGTGGTGCGGCTG
CGGGCATGTACCGGGCCAAACACAGCACCGAGGGGACTGAAGACTGGCGG
AAGCTGCCTCCAAGTCAGCAGGTCAAACACTGGAAAGTAGACCCAAACAG
CCACTTTAATCCCACCCGCTTCGCGGCCAAGGCCCTTGCGGTGGGTACTG
TTTTGTGCCTGAGCGCTACGGGTGTTGCTGCTTTCGCGTTGGGACGTGTA
TTGAACATTAGCTCCATCGATGAGTTCGTCAGTAAAATGCGCGTGTGGGC
GCCCGCGAAAAAAAGGGAGTTGGAGGCATGGTTACATATCAAACCAAACC
CAGTGGTGGAGGTGGAGAGGAGGCATGTGGAGAAAATGACGTATGACGAG
GAGATAGAGTATTGGGGGGATATCTTGATGAAGGAGGAGAGGGAGAAGAA
GGTGAGAGAGATAGCAGAAGCAGGAGCAGTGGGTGTTGCAGGAGGGGTTC
GCTCTATCAAAGAAGGGAGGAAGCAGCAGCAACAGCAGCAGCAGTGGTGG
AGATGGCCTTGGCGGACGAAAGGATGA
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Synonyms
Publications