NO13G01390.1, NO13G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01390.1
Unique NameNO13G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2466
Alignment locationchr13:423571..426228 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:423571..426228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01390NO13G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01390.1NO13G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01390.1.cds1NO13G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01390.1.cds2NO13G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01390.1 ID=NO13G01390.1|Name=NO13G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp
ACCACAGATGTATGGACGAGAACGAGGAGCACGACGACCGGAAAAATCTC
TCAAGGTCATCACCGTTCGATAACCCAAGGACTAACAGGTAAGTGAGCCA
CTCTTGCGCCAATCATCACGTTAGGTATTAATAACCCCCAACATGGCCAT
GGCCACAAAACCAGCCACGACCACGAGGACGAGGAGCTCCTGACAACGGC
CCGCCAGTATGAAGAGGAGGAAGAGGAGGAAGATGAAGAGTACCGGGAGT
TGGGGGAAGCTCTGGCTTCAAGCGGCAGTCATCAGTATCAGCATCAGCGG
GAGCAGCTCCCAGAGCACCAGCAACAACAGGAGCAGCAAGAGCCACCACT
GCCGTTGGCGCACGAGAAGGAGGAGTGGAATCAGGAGGAGGAGCTTGAGC
ATAGTTCTGCGCGGGTTTCTTTGCGACTGGAGGCCGCCACGCATGAATTG
GAGGAGGTGCAAGACGCGTTGCAAAGAGGCTCAGGGGAGAGCCAAGCGAA
TGGGAGTGAAACTCGACAGACTGCTCGGAAGGGCCCAGAGGGGAGAAGAG
TTGAGGAAAGTAGACGCGAGCCACCGCTGAATAAAAGAGAGGGGGAAGAA
AGACGGTATGATGCCGTTTTGTACGAAGGCTCCAAAGATAGGACCACCTT
GCCGTATCCTCCTTCTCCTCCTCCGCCTGCAAGCAATAGCAGCAGCAGGA
TCAGCGGTGCCAAAGCAATCCAATGGTCATCCATGGCTGCGTCCGATGCT
TTTTCCTCCTCTTCTACTTCTTTCCACCCTTCCATGGCCTCCTCCTCCCC
TTCCATCCACCGTCGCACATCATTTCAAGTAAGGAGCGGCGACCCTTTCG
GATTCACCAGCCGCAGAAAAAGAGGTACAAGCCTTGGAAATAGCGCAGCA
TCGGGAGGAGGCGGAGAAGCAAGGGGAAGAGAACGTAGAGAACAGGCAGG
AAATCTTGACCTACTCCAAAGGATGACGGAGCAACTTTCTTCCTCCTCTC
CCACTGCTGCCACTCCTGCTGCTGCTGCTTCGGCCCCTGCTCTCCTTCCC
TTCTCCTCCTCCTCCTCGCCCTCCTTCTCCTCCTCCTCCTCCTCCTCCAC
GACCACCACCACTACCATTTCGAAACCGACTCAAATCTTTCACGCCTCGT
TACCATCATTCACATCTCATTATCCATCCTCCCCCTCTTCGCGCCTGCAT
GCGAAGCCAGCATTTGCCTCTGCTGCTCCTACCACTGCTGAGACTAGCAG
GAGTACCAAACGTGCAGCGAAGCTACAGAAGCAACGGCAGCAGCAGCAAC
AGGAGGAACAGCTCTATCACGATTGGAAAAGAGGGGGCGAGGAGGAAGAG
GAGGAAGAAGACAAGGGAGACGAAGAAGAAATGACCCGGCTTTTGGGTCG
AAGCACCGCCTCGTCCTCCCTCCCTTCCTCCCTCCCTTCCTCATCCTCAG
CGTCCGTGTTGTTGACTCGACGAGTACAACAGCAGCAGCTTGATCTCACC
CGTTTGCAAGAGGAGAACGAATTGCTGCAGCGACAGCTGGAGCAGCAGCA
GCGCGTGCAGCAGGAAAGGCGGCAGGAGGTGGTGCGATTGAGGAAGGGGG
AGGTGGAAGGGAAGCAGAGGGAGGCGGTTTTGGAGGCGAATAATGCGAGA
TTGGAGAGGGAACTAAAGGAGATTAGAGGGGACATGGAGAGGATAATGAC
AGAACAAGCGGAGGTCTTGATTCAGAGCGAGGCATGGAGGGAAGAGAATG
AGCTCTTGTGCGCTCAGGTAGCAGAAATGAGAGCGAGAGCGGAGGGTGCG
GAGGGTAAGGTATTGGAGATTCTGGAGGAGCAACGAGGGATAATCAAGGA
GGAGAGGAGGAAGGAGAGGGATGTGTGGTTGCAGAAAATGATAGGCTTCG
AAGGGCAATTGGACACAGCGTTGCAAAAATTTGCGGCGGCGAAACAAGAA
ATCAATCAGTTGAAGAGCACCGGCAATGAGCAACGACAGGAGCTCCGAGC
GATCCGTAAGGCCCTTCACCAGGCACACGACGACAACAACAGGAAAAAAC
AAGCGATTTCGTCACTCCAAAGGCATCAGCATGAGCTCACCGAGCAGGCT
TCGTTGGTTGTGCAGCAACAGACGGAAGAATTAACACGGCTGAGGAAAAT
CGCACAGGAAGGGCAGGCCTTGAGGGAGGAAGTGATGGTTCTGCAGGAGG
AGGTGGAAAGATTGGAGGTAGAGCTGGAGGGGAAGGAAAGTAAGGAGGGA
GAGTGCGCGTCGTTGCTTGTGATGGTGGAGGAGCAGCAGAGGATGATCGG
GGAGATGGAGAGGAGGGAAAGAGTATGGAAGGAAGAAGGGTTGAGGGCGG
GAGGGAGGGAGGCGGAGTGGAGGGGGAGGGGGAAGATGTGGGCGAGGGAG
AGGGCGGGCTTGGAGAAGGAGGTGAGGGAGCTGAGATTCCAGTTGCAGAA
GGCGTTGGCGAGGTGA
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protein sequence of NO13G01390.1

>NO13G01390.1-protein ID=NO13G01390.1-protein|Name=NO13G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MAASDAFSSSSTSFHPSMASSSPSIHRRTSFQVRSGDPFGFTSRRKRGTS
LGNSAASGGGGEARGRERREQAGNLDLLQRMTEQLSSSSPTAATPAAAAS
APALLPFSSSSSPSFSSSSSSSTTTTTTISKPTQIFHASLPSFTSHYPSS
PSSRLHAKPAFASAAPTTAETSRSTKRAAKLQKQRQQQQQEEQLYHDWKR
GGEEEEEEEDKGDEEEMTRLLGRSTASSSLPSSLPSSSSASVLLTRRVQQ
QQLDLTRLQEENELLQRQLEQQQRVQQERRQEVVRLRKGEVEGKQREAVL
EANNARLERELKEIRGDMERIMTEQAEVLIQSEAWREENELLCAQVAEMR
ARAEGAEGKVLEILEEQRGIIKEERRKERDVWLQKMIGFEGQLDTALQKF
AAAKQEINQLKSTGNEQRQELRAIRKALHQAHDDNNRKKQAISSLQRHQH
ELTEQASLVVQQQTEELTRLRKIAQEGQALREEVMVLQEEVERLEVELEG
KESKEGECASLLVMVEEQQRMIGEMERRERVWKEEGLRAGGREAEWRGRG
KMWARERAGLEKEVRELRFQLQKALAR*
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mRNA from alignment at chr13:423571..426228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01390.1 ID=NO13G01390.1|Name=NO13G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at chr13:423571..426228+ (Nannochloropsis oceanica)
ACCACAGATGTATGGACGAGAACGAGGAGCACGACGACCGGAAAAATCTC
TCAAGGTCATCACCGTTCGATAACCCAAGGACTAACAGGTAAGTGAGCCA
CTCTTGCGCCAATCATCACGTTAGGTATTAATAACCCCCAACATGGCCAT
GGCCACAAAACCAGCCACGACCACGAGGACGAGGAGCTCCTGACAACGGC
CCGCCAGTATGAAGAGGAGGAAGAGGAGGAAGATGAAGAGTACCGGGAGT
TGGGGGAAGCTCTGGCTTCAAGCGGCAGTCATCAGTATCAGCATCAGCGG
GAGCAGCTCCCAGAGCACCAGCAACAACAGGAGCAGCAAGAGCCACCACT
GCCGTTGGCGCACGAGAAGGAGGAGTGGAATCAGGAGGAGGAGCTTGAGC
ATAGTTCTGCGCGGGTTTCTTTGCGACTGGAGGCCGCCACGCATGAATTG
GAGGAGGTGCAAGACGCGTTGCAAAGAGGCTCAGGGGAGAGCCAAGCGAA
TGGGAGTGAAACTCGACAGACTGCTCGGAAGGGCCCAGAGGGGAGAAGAG
TTGAGGAAAGTAGACGCGAGCCACCGCTGAATAAAAGAGAGGGGGAAGAA
AGACGGTATGATGCCGTTTTGTACGAAGGCTCCAAAGATAGGACCACCTT
GCCGTATCCTCCTTCTCCTCCTCCGCCTGCAAGCAATAGCAGCAGCAGGA
TCAGCGGTGCCAAAGCAATCCAATGGTCATCCATGGCTGCGTCCGATGCT
TTTTCCTCCTCTTCTACTTCTTTCCACCCTTCCATGGCCTCCTCCTCCCC
TTCCATCCACCGTCGCACATCATTTCAAGTAAGGAGCGGCGACCCTTTCG
GATTCACCAGCCGCAGAAAAAGAGGTACAAGCCTTGGAAATAGCGCAGCA
TCGGGAGGAGGCGGAGAAGCAAGGGGAAGAGAACGTAGAGAACAGGCAGG
AAATCTTGACCTACTCCAAAGGATGACGGAGCAACTTTCTTCCTCCTCTC
CCACTGCTGCCACTCCTGCTGCTGCTGCTTCGGCCCCTGCTCTCCTTCCC
TTCTCCTCCTCCTCCTCGCCCTCCTTCTCCTCCTCCTCCTCCTCCTCCAC
GACCACCACCACTACCATTTCGAAACCGACTCAAATCTTTCACGCCTCGT
TACCATCATTCACATCTCATTATCCATCCTCCCCCTCTTCGCGCCTGCAT
GCGAAGCCAGCATTTGCCTCTGCTGCTCCTACCACTGCTGAGACTAGCAG
GAGTACCAAACGTGCAGCGAAGCTACAGAAGCAACGGCAGCAGCAGCAAC
AGGAGGAACAGCTCTATCACGATTGGAAAAGAGGGGGCGAGGAGGAAGAG
GAGGAAGAAGACAAGGGAGACGAAGAAGAAATGACCCGGCTTTTGGGTCG
AAGCACCGCCTCGTCCTCCCTCCCTTCCTCCCTCCCTTCCTCATCCTCAG
CGTCCGTGTTGTTGACTCGACGAGTACAACAGCAGCAGCTTGATCTCACC
CGTTTGCAAGAGGAGAACGAATTGCTGCAGCGACAGCTGGAGCAGCAGCA
GCGCGTGCAGCAGGAAAGGCGGCAGGAGGTGGTGCGATTGAGGAAGGGGG
AGGTGGAAGGGAAGCAGAGGGAGGCGGTTTTGGAGGCGAATAATGCGAGA
TTGGAGAGGGAACTAAAGGAGATTAGAGGGGACATGGAGAGGATAATGAC
AGAACAAGCGGAGGTCTTGATTCAGAGCGAGGCATGGAGGGAAGAGAATG
AGCTCTTGTGCGCTCAGGTAGCAGAAATGAGAGCGAGAGCGGAGGGTGCG
GAGGGTAAGGTATTGGAGATTCTGGAGGAGCAACGAGGGATAATCAAGGA
GGAGAGGAGGAAGGAGAGGGATGTGTGGTTGCAGAAAATGATAGGCTTCG
AAGGGCAATTGGACACAGCGTTGCAAAAATTTGCGGCGGCGAAACAAGGT
ATGTGTGGGAGGGAAGGAAGGAGGGAGGGAGGGAAGGTAGGGAAGGTAGG
GAAGGTAGAAGTGTGCGGATGGGGAAACCATTGATATTGAGATGAAAGAA
GGAGGTTCCTTTTTGCGCCACCTTAACGTTCTTGAAGCCCTTTCCTTCCC
CACTTCCTCACTTCCTCTCTCCCCTCCTCCCTCCCTTTAGAAATCAATCA
GTTGAAGAGCACCGGCAATGAGCAACGACAGGAGCTCCGAGCGATCCGTA
AGGCCCTTCACCAGGCACACGACGACAACAACAGGAAAAAACAAGCGATT
TCGTCACTCCAAAGGCATCAGCATGAGCTCACCGAGCAGGCTTCGTTGGT
TGTGCAGCAACAGACGGAAGAATTAACACGGCTGAGGAAAATCGCACAGG
AAGGGCAGGCCTTGAGGGAGGAAGTGATGGTTCTGCAGGAGGAGGTGGAA
AGATTGGAGGTAGAGCTGGAGGGGAAGGAAAGTAAGGAGGGAGAGTGCGC
GTCGTTGCTTGTGATGGTGGAGGAGCAGCAGAGGATGATCGGGGAGATGG
AGAGGAGGGAAAGAGTATGGAAGGAAGAAGGGTTGAGGGCGGGAGGGAGG
GAGGCGGAGTGGAGGGGGAGGGGGAAGATGTGGGCGAGGGAGAGGGCGGG
CTTGGAGAAGGAGGTGAGGGAGCTGAGATTCCAGTTGCAGAAGGCGTTGG
CGAGGTGA
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Coding sequence (CDS) from alignment at chr13:423571..426228+

>NO13G01390.1 ID=NO13G01390.1|Name=NO13G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr13:423571..426228+ (Nannochloropsis oceanica)
ATGGCTGCGTCCGATGCTTTTTCCTCCTCTTCTACTTCTTTCCACCCTTC
CATGGCCTCCTCCTCCCCTTCCATCCACCGTCGCACATCATTTCAAGTAA
GGAGCGGCGACCCTTTCGGATTCACCAGCCGCAGAAAAAGAGGTACAAGC
CTTGGAAATAGCGCAGCATCGGGAGGAGGCGGAGAAGCAAGGGGAAGAGA
ACGTAGAGAACAGGCAGGAAATCTTGACCTACTCCAAAGGATGACGGAGC
AACTTTCTTCCTCCTCTCCCACTGCTGCCACTCCTGCTGCTGCTGCTTCG
GCCCCTGCTCTCCTTCCCTTCTCCTCCTCCTCCTCGCCCTCCTTCTCCTC
CTCCTCCTCCTCCTCCACGACCACCACCACTACCATTTCGAAACCGACTC
AAATCTTTCACGCCTCGTTACCATCATTCACATCTCATTATCCATCCTCC
CCCTCTTCGCGCCTGCATGCGAAGCCAGCATTTGCCTCTGCTGCTCCTAC
CACTGCTGAGACTAGCAGGAGTACCAAACGTGCAGCGAAGCTACAGAAGC
AACGGCAGCAGCAGCAACAGGAGGAACAGCTCTATCACGATTGGAAAAGA
GGGGGCGAGGAGGAAGAGGAGGAAGAAGACAAGGGAGACGAAGAAGAAAT
GACCCGGCTTTTGGGTCGAAGCACCGCCTCGTCCTCCCTCCCTTCCTCCC
TCCCTTCCTCATCCTCAGCGTCCGTGTTGTTGACTCGACGAGTACAACAG
CAGCAGCTTGATCTCACCCGTTTGCAAGAGGAGAACGAATTGCTGCAGCG
ACAGCTGGAGCAGCAGCAGCGCGTGCAGCAGGAAAGGCGGCAGGAGGTGG
TGCGATTGAGGAAGGGGGAGGTGGAAGGGAAGCAGAGGGAGGCGGTTTTG
GAGGCGAATAATGCGAGATTGGAGAGGGAACTAAAGGAGATTAGAGGGGA
CATGGAGAGGATAATGACAGAACAAGCGGAGGTCTTGATTCAGAGCGAGG
CATGGAGGGAAGAGAATGAGCTCTTGTGCGCTCAGGTAGCAGAAATGAGA
GCGAGAGCGGAGGGTGCGGAGGGTAAGGTATTGGAGATTCTGGAGGAGCA
ACGAGGGATAATCAAGGAGGAGAGGAGGAAGGAGAGGGATGTGTGGTTGC
AGAAAATGATAGGCTTCGAAGGGCAATTGGACACAGCGTTGCAAAAATTT
GCGGCGGCGAAACAAGAAATCAATCAGTTGAAGAGCACCGGCAATGAGCA
ACGACAGGAGCTCCGAGCGATCCGTAAGGCCCTTCACCAGGCACACGACG
ACAACAACAGGAAAAAACAAGCGATTTCGTCACTCCAAAGGCATCAGCAT
GAGCTCACCGAGCAGGCTTCGTTGGTTGTGCAGCAACAGACGGAAGAATT
AACACGGCTGAGGAAAATCGCACAGGAAGGGCAGGCCTTGAGGGAGGAAG
TGATGGTTCTGCAGGAGGAGGTGGAAAGATTGGAGGTAGAGCTGGAGGGG
AAGGAAAGTAAGGAGGGAGAGTGCGCGTCGTTGCTTGTGATGGTGGAGGA
GCAGCAGAGGATGATCGGGGAGATGGAGAGGAGGGAAAGAGTATGGAAGG
AAGAAGGGTTGAGGGCGGGAGGGAGGGAGGCGGAGTGGAGGGGGAGGGGG
AAGATGTGGGCGAGGGAGAGGGCGGGCTTGGAGAAGGAGGTGAGGGAGCT
GAGATTCCAGTTGCAGAAGGCGTTGGCGAGGTGA
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Synonyms
Publications