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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:402930..406327 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01330.1 vs.
Match: EWM21797.1 (hypothetical protein Naga_100065g18 [Nannochloropsis gaditana]) HSP 1 Score: 148.3 bits (373), Expect = 8.600e-32 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 547 TVNRHSRRKYSMDPASFVIVPTPKILLGSWFDKRPNRLCRTPGCRNRYRTPGYLCESCGGGKCQVKGCRRLHQGKQGLSDLFFCRAHRNVYAALMMKDGG 647
T + +RK S+D F IVP PK+L GS +KR NR CRTP C NRYRTPGYLCE+CGGG+CQ +GC RLHQGKQGLS+LFFCRAHRN+YA L + G
Sbjct: 322 TKAQRRKRKCSLDSVVFDIVPIPKVLPGSLLEKRRNRSCRTPHCTNRYRTPGYLCEACGGGRCQARGCERLHQGKQGLSNLFFCRAHRNIYARLQKEGKG 421
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01330.1 ID=NO13G01330.1|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3296bp
CGTGGTCCGGAGGCTCAGCGACCCTCCGGTCCCTTGGCCCAGCGATCCTC
CGGCCGCAGTCTACTAGATGAAGGGCTCGCGCGTTCACGTTCAATGAATT
TGCATGCCCCGTTGACCGCGAAAACAACCACATATGAAAATACAAACAGA
TGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACCACTCC
TCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAATGCCTT
TTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGACCCTG
TAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGCAGCCC
CCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAGCAAGA
TGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATGCGACT
TCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCCGAGGA
GGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATCGGGGC
CGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGGAGATC
CTATCGAATCGACGATGATGGAGCTCAACTTCCTGGCGGACGCCGTGGGC
CATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACTTGCGG
CTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGGCGAAC
GACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGTACAAG
CAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCCCACCA
TGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGCTTCCC
ATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACAGCGAA
AGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCACCAGCA
GCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCATTGCCA
ATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTCATCCC
CTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGATCCTG
CACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTGTTGCC
TCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTAACAGC
TCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCCGTGTT
GTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAGTAGCA
CCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGGAGGAG
CTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCGAGCGC
GGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCCCTCTT
TGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATTCTCTG
CCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCTGCTGC
TCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCATGTAG
AGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCAGCTCT
TCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCAAGCAG
CGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAATCGTC
ATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCGTTCCC
ACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAACCGTCT
GTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATACTTGT
GTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGACGCTTG
CATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCACATCG
GAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGATGCGCGGTGGA
GGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGGAGCTGG
AGCTGGGGCGAGAAATGACGGCATGAGTGGAGGAAGTGCATGCCGCTGCC
TTTTTAAAAGGTGTACGTGTTCTGTGCACATTCGAGCCCAAGCAACCAAA
GTCTCCCCCTCCACACCACCTCCTTCCCTCCTGCCCTAATACCTTGGGTG
GACGCTTGGGGAGGTTTCCTTCTATGTATGTATATATGTGCTCGTGGCGT
TGTGTGTGTCCATGAATGAGCAAGATAGGATTAAATCAAGCCGGGATGCT
TGAAGAAATCCTCGTCTCACTCCACCTACCGGATTAAATGACTGAGTTGA
TCACGGGTAAATAACAAACGAATATCCTCACGAATTAAAAGACAGCATGT
GCCCTCTAATGTCTCACTCCGTTTCCACCAGTTAGAGACGGCATATATAT
GAATTAGGTTAATCGCCACTTAAGGCGATGCTTACCCGCCATAAAGGTTC
AGTAACCGCAACTGCGACAATAGTTTTCTACCAGATTGCATGAGTAGTAG
AGAAGAAAAAACCGAATTCGAGCTAGCAGAATGATCACAATAAAGCATCT
TGCGGTAGCGATGCAATAGAATATAAGGAAAACAAATCCTGATCTTGAGT
GCCTGTGTATGGTGCGGAGAAGAAGGAGGTCCTTCTATACCTTATTGTGC
GTACAGAATATCCCATCTGCAGGAAGATGGCGCGCATAAGGGGGGAAGGG
GAGGGAAAGAAGGCAGAGAGAAAGAGAGAAGGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAATTGTAGAATGCCTTATGTTTTTGAAT
GAGCCCTAAAACCGTCAAGCAAATCCTTATACTTTTGAAAAATAATATGT
GTACCCAAAATCTTGCCCTCAGGAAAAAGACAAGAAGATGAGAAAGAGAA
AGCGAGAAAGAGAAAGGGGTCGTCAAAGAGGAATAAAGCGAGACATGAAG
ATACAGAAATCTAGAAAGAAGCATACTCTTTCCTCTATTTTTTGTAAGGA
AATATGATGCGATATGCCTGTCCGGTCCCCATCGACCCGCCAAGAGATGC
GAATGAAAGAAATGAGATTGTAATGATGGGCATCCGAACCACCTTATCAA
TCATTTTCTCATTGAATATAAAAACAGAATGCGACATACGTGAGAT back to topprotein sequence of NO13G01330.1 >NO13G01330.1-protein ID=NO13G01330.1-protein|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MVPSRLLSTPSCADNHSSPAAGATSSLYENDNAFLEASLDATDIPASPDP
VKAAGHCQSPHQAEQQPPVSYGPPQQHQHQQQQDVSEQAKGVAMPDDSCD
FLLHISDSPFSRLRVRGGVACTRGRGDDAGGIGADEFASTCMSPTAVIGD
PIESTMMELNFLADAVGHLEGVDVNMLATHATCGSGHSLYAFPLDRAEGE
RQPSPYSYHPEHQHKYKQTQHRADSYSFSPRPHHGQQERQQQKHYLSDAS
HYMAHTNQVSSVEINSERQGLDSYHHQHHQHHQQHHQQPYYQRDASTSIA
NSIEKTILPSFSSHPHPLKPHCQHHQHHLHERSCTLKADVNPAPITSPCC
LYRHGNTTDSLHPHINSSCNINAAGCITNRASVLYDDKGEEEVAIGSCSS
TCSTCSGSSSINGSEEELRLLTTENYETHFASSAGAEAYIGSSGGISSPS
LTTSEEDDEELPHHHSLPATSRIRRNAAIVAAAALAADSGSRSRRRSVHV
EGYSSTRSSITGDSSSSSTATFILPFHPTTTASSGGIGGGYWPPLKTVNR
HSRRKYSMDPASFVIVPTPKILLGSWFDKRPNRLCRTPGCRNRYRTPGYL
CESCGGGKCQVKGCRRLHQGKQGLSDLFFCRAHRNVYAALMMKDGGDARW
RNRNERKSRSRSRSWSWSWGEK* back to topmRNA from alignment at chr13:402930..406327+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01330.1 ID=NO13G01330.1|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3398bp|location=Sequence derived from alignment at chr13:402930..406327+ (Nannochloropsis oceanica)
CGTGGTCCGGAGGCTCAGCGACCCTCCGGTCCCTTGGCCCAGCGATCCTC
CGGCCGCAGTCTACTAGATGAAGGGCTCGCGCGTTCACGTTCAATGAATT
TGCATGCCCCGTTGACCGCGAAAACAACCACATATGAAAATACAAACAGA
TGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACCACTCC
TCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAATGCCTT
TTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGACCCTG
TAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGCAGCCC
CCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAGCAAGA
TGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATGCGACT
TCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCCGAGGA
GGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATCGGGGC
CGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGGAGATC
CTATCGAATCGACGATGATGGAGGTAAATTATGTTACTGGGTGCATGTAT
GGGTGTATTCGGTACATTCTGATCTCTACTGTCGATCCAGCAGTCACTAA
CATCTTACACCTACATGAACCACAGCTCAACTTCCTGGCGGACGCCGTGG
GCCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACTTGC
GGCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGGCGA
ACGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGTACA
AGCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCCCAC
CATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGCTTC
CCATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACAGCG
AAAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCACCAG
CAGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCATTGC
CAATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTCATC
CCCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGATCC
TGCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTGTTG
CCTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTAACA
GCTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCCGTG
TTGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAGTAG
CACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGGAGG
AGCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCGAGC
GCGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCCCTC
TTTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATTCTC
TGCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCTGCT
GCTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCATGT
AGAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCAGCT
CTTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCAAGC
AGCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAATCG
TCATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCGTTC
CCACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAACCGT
CTGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATACTT
GTGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGACGCT
TGCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCACAT
CGGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGATGCGCGGTG
GAGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGGAGCT
GGAGCTGGGGCGAGAAATGACGGCATGAGTGGAGGAAGTGCATGCCGCTG
CCTTTTTAAAAGGTGTACGTGTTCTGTGCACATTCGAGCCCAAGCAACCA
AAGTCTCCCCCTCCACACCACCTCCTTCCCTCCTGCCCTAATACCTTGGG
TGGACGCTTGGGGAGGTTTCCTTCTATGTATGTATATATGTGCTCGTGGC
GTTGTGTGTGTCCATGAATGAGCAAGATAGGATTAAATCAAGCCGGGATG
CTTGAAGAAATCCTCGTCTCACTCCACCTACCGGATTAAATGACTGAGTT
GATCACGGGTAAATAACAAACGAATATCCTCACGAATTAAAAGACAGCAT
GTGCCCTCTAATGTCTCACTCCGTTTCCACCAGTTAGAGACGGCATATAT
ATGAATTAGGTTAATCGCCACTTAAGGCGATGCTTACCCGCCATAAAGGT
TCAGTAACCGCAACTGCGACAATAGTTTTCTACCAGATTGCATGAGTAGT
AGAGAAGAAAAAACCGAATTCGAGCTAGCAGAATGATCACAATAAAGCAT
CTTGCGGTAGCGATGCAATAGAATATAAGGAAAACAAATCCTGATCTTGA
GTGCCTGTGTATGGTGCGGAGAAGAAGGAGGTCCTTCTATACCTTATTGT
GCGTACAGAATATCCCATCTGCAGGAAGATGGCGCGCATAAGGGGGGAAG
GGGAGGGAAAGAAGGCAGAGAGAAAGAGAGAAGGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAATTGTAGAATGCCTTATGTTTTTGA
ATGAGCCCTAAAACCGTCAAGCAAATCCTTATACTTTTGAAAAATAATAT
GTGTACCCAAAATCTTGCCCTCAGGAAAAAGACAAGAAGATGAGAAAGAG
AAAGCGAGAAAGAGAAAGGGGTCGTCAAAGAGGAATAAAGCGAGACATGA
AGATACAGAAATCTAGAAAGAAGCATACTCTTTCCTCTATTTTTTGTAAG
GAAATATGATGCGATATGCCTGTCCGGTCCCCATCGACCCGCCAAGAGAT
GCGAATGAAAGAAATGAGATTGTAATGATGGGCATCCGAACCACCTTATC
AATCATTTTCTCATTGAATATAAAAACAGAATGCGACATACGTGAGAT back to topCoding sequence (CDS) from alignment at chr13:402930..406327+ >NO13G01330.1 ID=NO13G01330.1|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at chr13:402930..406327+ (Nannochloropsis oceanica)
ATGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACCACTC
CTCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAATGCCT
TTTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGACCCT
GTAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGCAGCC
CCCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAGCAAG
ATGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATGCGAC
TTCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCCGAGG
AGGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATCGGGG
CCGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGGAGAT
CCTATCGAATCGACGATGATGGAGCTCAACTTCCTGGCGGACGCCGTGGG
CCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACTTGCG
GCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGGCGAA
CGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGTACAA
GCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCCCACC
ATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGCTTCC
CATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACAGCGA
AAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCACCAGC
AGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCATTGCC
AATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTCATCC
CCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGATCCT
GCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTGTTGC
CTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTAACAG
CTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCCGTGT
TGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAGTAGC
ACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGGAGGA
GCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCGAGCG
CGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCCCTCT
TTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATTCTCT
GCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCTGCTG
CTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCATGTA
GAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCAGCTC
TTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCAAGCA
GCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAATCGT
CATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCGTTCC
CACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAACCGTC
TGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATACTTG
TGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGACGCTT
GCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCACATC
GGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGATGCGCGGTGG
AGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGGAGCTG
GAGCTGGGGCGAGAAATGA back to top
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