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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:379756..382065 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01250.1 vs.
Match: EWM21806.1 (h+-translocating pyrophosphatase family [Nannochloropsis gaditana]) HSP 1 Score: 1339.7 bits (3466), Expect = 0.000e+0 Identity = 688/767 (89.70%), Postives = 735/767 (95.83%), Query Frame = 0
Query: 1 MGTASQDLWLSIFVVGFSIVGLVFAGLQFKLINDIEIVSNTDSASNGESGRGSGDSEVTTRLKEISGAIATGADAFLHAEYLICVAFSAVFSCIIFGLVSWGASRVPGNTTNDGLVQGALTTVAFLLGAFTSMLSGWIGMKVAVFANVRTTIAAQKPGWTDCFNTAFRAGGVMGFALTSLAILILYIALQLYKIQYPRKDEWFMIMEAISGYGLGGSSIAMFGRVGGGIYTKAADVGADLVGKVVHGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFGSFAESTCAALVIASQAGELVDGAIEKNYLFDYSWSAVLFPLVVSASGLIICLLASFVATHMLPVRKERDVENALKIQLIVTTLAVVPVVLGLAYWFLPSDFSVSGVGGAVPKGNPAKAAGAVIAGAVGGLIIGLVTEYYTSHSFRPVRDVANACKTGAATNIIYGLALGYKSCIIPVFILAIVIFIGFYTLNMYGVALAAIGMLVTLATGLTIDAYGPVCDNAGGIAEMALQDYPEVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALYGAFAVRVGIRNGVNILSPVTFAFLLIGSNLPYWFSALTMKSVGTAAMEMVLEVERQFRECPELLNEGTSLRPDYTRCVDISTKAALREMVPPAALVMLSPLIAGTFFGKYAVAGVLTGGLVSGVQLAVSMSNTGGAWDNAKKYIEKQSPDSELQGKGSDIHKAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFSPYFLAIYDGNGVFHTITESS 768
M T SQDLWLSIFVV FS++GL FA +QFKLI DI+I+S+TD ASNGE+GR GDSEVT RLK+ISGAI+TGADAFLHAEYLICV FS +F+CIIF VSWG++RVPGN+T DGL+QGALTTVAFLLGAFTSMLSGWIGMKVAVFANVRTTIAAQKPGWT+CFNTAFRAGGVMGFALTSLAILILYIALQLYKIQYP EWFM+MEAISGYGLGGSSIAMFGRVGGGIYTKAADVGADLVGKVVHGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFGSFAESTCAALVIASQA E+VDG ++ +YL++YSWSAVLFPLV+SA+GLIICLL+SFVATH+LPVRKE+DVENALKIQLIVTTLAV+PVV GLA+WFLP FS+SGVG VP+G P KAAGA++AGA+GGLIIGL+TE+YTSHSF+PVR+VANACKTGAATNIIYGLALGYKSCIIPVFILAIVIFIGFYTLNMYGVALAAIGMLVTLATGLTIDAYGPVCDNAGGIAEMALQDYPEVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALYGAFAVR+GIRNGVNILSPVTFAFLLIGSNLPYWFSALTMKSVGTAAM+MV+EVERQFRE P+LLNEGT+LRPDYTRCVDISTKAAL+EMVPPAALVMLSPLIAGTFFGKYAVAGVLTGGLVSGVQLAVSMSNTGGAWDNAKKYIEKQSP+ ELQGKGSDIHKAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVF+PYFLAI DGNGVFH ITESS
Sbjct: 1 MVTTSQDLWLSIFVVAFSVIGLAFAAIQFKLIADIQIISSTDGASNGEAGRAGGDSEVTKRLKDISGAISTGADAFLHAEYLICVWFSIIFACIIFAFVSWGSTRVPGNSTTDGLIQGALTTVAFLLGAFTSMLSGWIGMKVAVFANVRTTIAAQKPGWTECFNTAFRAGGVMGFALTSLAILILYIALQLYKIQYPSSSEWFMVMEAISGYGLGGSSIAMFGRVGGGIYTKAADVGADLVGKVVHGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFGSFAESTCAALVIASQADEVVDGIVKADYLYNYSWSAVLFPLVISATGLIICLLSSFVATHLLPVRKEKDVENALKIQLIVTTLAVIPVVFGLAHWFLPGTFSLSGVGSTVPQGTPDKAAGAIVAGALGGLIIGLITEFYTSHSFKPVREVANACKTGAATNIIYGLALGYKSCIIPVFILAIVIFIGFYTLNMYGVALAAIGMLVTLATGLTIDAYGPVCDNAGGIAEMALQDYPEVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALYGAFAVRIGIRNGVNILSPVTFAFLLIGSNLPYWFSALTMKSVGTAAMQMVMEVERQFREQPQLLNEGTTLRPDYTRCVDISTKAALKEMVPPAALVMLSPLIAGTFFGKYAVAGVLTGGLVSGVQLAVSMSNTGGAWDNAKKYIEKQSPEHELQGKGSDIHKAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAPYFLAINDGNGVFHQITESS 767
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01250.1 ID=NO13G01250.1|Name=NO13G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp
ATGGGGACGGCATCCCAAGATCTATGGTTGTCCATCTTCGTGGTGGGCTT
CTCTATTGTTGGCCTCGTCTTCGCGGGGCTACAGTTTAAGCTGATCAATG
ACATAGAGATCGTCTCGAACACGGACTCTGCCAGCAATGGCGAATCGGGC
CGCGGCAGTGGAGACAGTGAGGTGACCACTCGCCTTAAGGAAATTTCTGG
GGCTATCGCCACGGGTGCTGATGCTTTCTTGCACGCCGAGTACTTGATTT
GCGTGGCTTTTTCCGCTGTGTTTTCTTGTATCATTTTTGGCTTGGTCTCA
TGGGGTGCGTCTCGCGTTCCCGGGAACACGACTAACGACGGGCTTGTCCA
AGGAGCGCTCACCACGGTTGCCTTCTTGCTCGGTGCCTTTACTTCCATGC
TTTCCGGCTGGATCGGGATGAAGGTTGCGGTGTTTGCAAATGTCCGCACC
ACCATTGCCGCGCAGAAGCCCGGGTGGACTGATTGTTTCAATACGGCCTT
CCGCGCCGGGGGGGTCATGGGCTTTGCGCTCACCTCGCTTGCGATCCTGA
TTTTGTACATCGCCCTACAGCTGTACAAGATTCAGTACCCGCGTAAGGAT
GAGTGGTTTATGATTATGGAGGCTATTTCCGGGTATGGTCTCGGAGGATC
TTCTATTGCCATGTTTGGGCGTGTGGGTGGGGGAATCTACACCAAGGCTG
CGGATGTCGGTGCGGATTTGGTGGGGAAGGTCGTACACGGGATCCCGGAG
GATGACCCTAGGAATCCGGCTGTGATTGCTGATAATGTGGGGGATAACGT
CGGGGATGTGGCGGGCATGGGCGCTGATTTGTTTGGCTCCTTTGCGGAGT
CGACGTGTGCAGCCTTGGTGATTGCGAGTCAGGCAGGCGAACTGGTGGAT
GGGGCGATCGAGAAGAATTACCTATTTGATTACTCGTGGAGTGCCGTGCT
TTTCCCCCTTGTGGTGTCGGCATCCGGCTTGATTATCTGCCTGTTGGCTT
CCTTCGTGGCCACTCACATGCTGCCTGTGCGCAAGGAGAGGGACGTGGAG
AACGCGCTTAAGATCCAGCTGATTGTCACGACCTTGGCCGTCGTCCCCGT
GGTGCTTGGGCTCGCCTACTGGTTCCTTCCCTCTGACTTCTCCGTGTCGG
GCGTGGGGGGGGCTGTGCCTAAGGGAAACCCGGCCAAGGCTGCTGGTGCC
GTTATTGCCGGTGCCGTGGGTGGACTGATCATTGGCTTGGTCACTGAATA
CTACACCTCTCATTCGTTTAGGCCCGTCCGAGACGTCGCCAATGCCTGCA
AGACCGGCGCGGCCACCAACATCATTTACGGTCTTGCCCTCGGGTATAAG
TCGTGCATTATTCCCGTGTTCATCCTTGCCATTGTCATTTTCATCGGTTT
CTACACCCTTAACATGTATGGCGTGGCTCTGGCCGCAATTGGTATGCTCG
TTACCCTGGCCACGGGCCTGACCATCGATGCGTACGGTCCCGTGTGCGAC
AACGCCGGGGGGATCGCCGAGATGGCCTTGCAAGACTACCCGGAGGTGCG
CGAGAAGACCGATGCCCTCGACGCGGCCGGCAACACCACCGCTGCTATCG
GCAAGGGTTTCGCCATTGGCTCTGCTGCCCTGGTCTCGCTCGCTTTGTAC
GGTGCCTTTGCTGTGCGTGTGGGCATCAGGAATGGGGTGAACATCCTGTC
CCCCGTAACTTTTGCCTTCCTTTTGATTGGCTCCAATTTGCCTTACTGGT
TCTCGGCTTTGACGATGAAGTCCGTCGGCACGGCCGCCATGGAAATGGTG
TTGGAGGTCGAGCGTCAATTCCGCGAATGCCCCGAGCTCCTGAACGAGGG
AACGAGCCTTCGACCTGATTATACGCGTTGTGTCGATATTTCGACCAAGG
CTGCGCTGCGTGAGATGGTCCCACCGGCGGCATTGGTGATGTTGTCGCCT
CTGATTGCCGGTACATTTTTTGGGAAGTACGCGGTGGCGGGTGTTCTGAC
CGGAGGCTTGGTTTCGGGCGTGCAACTGGCTGTATCCATGTCCAACACGG
GCGGGGCATGGGACAACGCCAAAAAGTACATTGAGAAGCAGAGCCCTGAC
AGCGAGCTGCAAGGGAAGGGATCGGACATCCACAAGGCGGCGGTGGTGGG
CGACACCGTGGGTGACCCATTGAAGGACACGTCCGGTCCCAGTCTGAATA
TTTTGATGAAGCTCATGGCTATCATCTCTCTGGTGTTTTCCCCTTACTTT
TTGGCCATCTATGACGGCAACGGCGTCTTCCACACCATCACTGAGAGCTC
GGCGACCTAA back to topprotein sequence of NO13G01250.1 >NO13G01250.1-protein ID=NO13G01250.1-protein|Name=NO13G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=770bp
MGTASQDLWLSIFVVGFSIVGLVFAGLQFKLINDIEIVSNTDSASNGESG
RGSGDSEVTTRLKEISGAIATGADAFLHAEYLICVAFSAVFSCIIFGLVS
WGASRVPGNTTNDGLVQGALTTVAFLLGAFTSMLSGWIGMKVAVFANVRT
TIAAQKPGWTDCFNTAFRAGGVMGFALTSLAILILYIALQLYKIQYPRKD
EWFMIMEAISGYGLGGSSIAMFGRVGGGIYTKAADVGADLVGKVVHGIPE
DDPRNPAVIADNVGDNVGDVAGMGADLFGSFAESTCAALVIASQAGELVD
GAIEKNYLFDYSWSAVLFPLVVSASGLIICLLASFVATHMLPVRKERDVE
NALKIQLIVTTLAVVPVVLGLAYWFLPSDFSVSGVGGAVPKGNPAKAAGA
VIAGAVGGLIIGLVTEYYTSHSFRPVRDVANACKTGAATNIIYGLALGYK
SCIIPVFILAIVIFIGFYTLNMYGVALAAIGMLVTLATGLTIDAYGPVCD
NAGGIAEMALQDYPEVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALY
GAFAVRVGIRNGVNILSPVTFAFLLIGSNLPYWFSALTMKSVGTAAMEMV
LEVERQFRECPELLNEGTSLRPDYTRCVDISTKAALREMVPPAALVMLSP
LIAGTFFGKYAVAGVLTGGLVSGVQLAVSMSNTGGAWDNAKKYIEKQSPD
SELQGKGSDIHKAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFSPYF
LAIYDGNGVFHTITESSAT* back to topmRNA from alignment at chr13:379756..382065+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01250.1 ID=NO13G01250.1|Name=NO13G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp|location=Sequence derived from alignment at chr13:379756..382065+ (Nannochloropsis oceanica)
ATGGGGACGGCATCCCAAGATCTATGGTTGTCCATCTTCGTGGTGGGCTT
CTCTATTGTTGGCCTCGTCTTCGCGGGGCTACAGTTTAAGCTGATCAATG
ACATAGAGATCGTCTCGAACACGGACTCTGCCAGCAATGGCGAATCGGGC
CGCGGCAGTGGAGACAGTGAGGTGACCACTCGCCTTAAGGAAATTTCTGG
GGCTATCGCCACGGGTGCTGATGCTTTCTTGCACGCCGAGTACTTGATTT
GCGTGGCTTTTTCCGCTGTGTTTTCTTGTATCATTTTTGGCTTGGTCTCA
TGGGGTGCGTCTCGCGTTCCCGGGAACACGACTAACGACGGGCTTGTCCA
AGGAGCGCTCACCACGGTTGCCTTCTTGCTCGGTGCCTTTACTTCCATGC
TTTCCGGCTGGATCGGGATGAAGGTTGCGGTGTTTGCAAATGTCCGCACC
ACCATTGCCGCGCAGAAGCCCGGGTGGACTGATTGTTTCAATACGGCCTT
CCGCGCCGGGGGGGTCATGGGCTTTGCGCTCACCTCGCTTGCGATCCTGA
TTTTGTACATCGCCCTACAGCTGTACAAGATTCAGTACCCGCGTAAGGAT
GAGTGGTTTATGATTATGGAGGCTATTTCCGGGTATGGTCTCGGAGGATC
TTCTATTGCCATGTTTGGGCGTGTGGGTGGGGGAATCTACACCAAGGCTG
CGGATGTCGGTGCGGATTTGGTGGGGAAGGTCGTACACGGGATCCCGGAG
GATGACCCTAGGAATCCGGCTGTGATTGCTGATAATGTGGGGGATAACGT
CGGGGATGTGGCGGGCATGGGCGCTGATTTGTTTGGCTCCTTTGCGGAGT
CGACGTGTGCAGCCTTGGTGATTGCGAGTCAGGCAGGCGAACTGGTGGAT
GGGGCGATCGAGAAGAATTACCTATTTGATTACTCGTGGAGTGCCGTGCT
TTTCCCCCTTGTGGTGTCGGCATCCGGCTTGATTATCTGCCTGTTGGCTT
CCTTCGTGGCCACTCACATGCTGCCTGTGCGCAAGGAGAGGGACGTGGAG
AACGCGCTTAAGATCCAGCTGATTGTCACGACCTTGGCCGTCGTCCCCGT
GGTGCTTGGGCTCGCCTACTGGTTCCTTCCCTCTGACTTCTCCGTGTCGG
GCGTGGGGGGGGCTGTGCCTAAGGGAAACCCGGCCAAGGCTGCTGGTGCC
GTTATTGCCGGTGCCGTGGGTGGACTGATCATTGGCTTGGTCACTGAATA
CTACACCTCTCATTCGTTTAGGCCCGTCCGAGACGTCGCCAATGCCTGCA
AGACCGGCGCGGCCACCAACATCATTTACGGTCTTGCCCTCGGGTATAAG
TCGTGCATTATTCCCGTGTTCATCCTTGCCATTGTCATTTTCATCGGTTT
CTACACCCTTAACATGTATGGCGTGGCTCTGGCCGCAATTGGTATGCTCG
TTACCCTGGCCACGGGCCTGACCATCGATGCGTACGGTCCCGTGTGCGAC
AACGCCGGGGGGATCGCCGAGATGGCCTTGCAAGACTACCCGGAGGTGCG
CGAGAAGACCGATGCCCTCGACGCGGCCGGCAACACCACCGCTGCTATCG
GCAAGGGTTTCGCCATTGGCTCTGCTGCCCTGGTCTCGCTCGCTTTGTAC
GGTGCCTTTGCTGTGCGTGTGGGCATCAGGAATGGGGTGAACATCCTGTC
CCCCGTAACTTTTGCCTTCCTTTTGATTGGCTCCAATTTGCCTTACTGGT
TCTCGGCTTTGACGATGAAGTCCGTCGGCACGGCCGCCATGGAAATGGTG
TTGGAGGTCGAGCGTCAATTCCGCGAATGCCCCGAGCTCCTGAACGAGGG
AACGAGCCTTCGACCTGATTATACGCGTTGTGTCGATATTTCGACCAAGG
CTGCGCTGCGTGAGATGGTCCCACCGGCGGCATTGGTGATGTTGTCGCCT
CTGATTGCCGGTACATTTTTTGGGAAGTACGCGGTGGCGGGTGTTCTGAC
CGGAGGCTTGGTTTCGGGCGTGCAACTGGCTGTATCCATGTCCAACACGG
GCGGGGCATGGGACAACGCCAAAAAGTACATTGAGAAGCAGAGCCCTGAC
AGCGAGCTGCAAGGGAAGGGATCGGACATCCACAAGGCGGCGGTGGTGGG
CGACACCGTGGGTGACCCATTGAAGGACACGTCCGGTCCCAGTCTGAATA
TTTTGATGAAGCTCATGGCTATCATCTCTCTGGTGTTTTCCCCTTACTTT
TTGGCCATCTATGACGGCAACGGCGTCTTCCACACCATCACTGAGAGCTC
GGCGACCTAA back to topCoding sequence (CDS) from alignment at chr13:379756..382065+ >NO13G01250.1 ID=NO13G01250.1|Name=NO13G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=2310bp|location=Sequence derived from alignment at chr13:379756..382065+ (Nannochloropsis oceanica)
ATGGGGACGGCATCCCAAGATCTATGGTTGTCCATCTTCGTGGTGGGCTT
CTCTATTGTTGGCCTCGTCTTCGCGGGGCTACAGTTTAAGCTGATCAATG
ACATAGAGATCGTCTCGAACACGGACTCTGCCAGCAATGGCGAATCGGGC
CGCGGCAGTGGAGACAGTGAGGTGACCACTCGCCTTAAGGAAATTTCTGG
GGCTATCGCCACGGGTGCTGATGCTTTCTTGCACGCCGAGTACTTGATTT
GCGTGGCTTTTTCCGCTGTGTTTTCTTGTATCATTTTTGGCTTGGTCTCA
TGGGGTGCGTCTCGCGTTCCCGGGAACACGACTAACGACGGGCTTGTCCA
AGGAGCGCTCACCACGGTTGCCTTCTTGCTCGGTGCCTTTACTTCCATGC
TTTCCGGCTGGATCGGGATGAAGGTTGCGGTGTTTGCAAATGTCCGCACC
ACCATTGCCGCGCAGAAGCCCGGGTGGACTGATTGTTTCAATACGGCCTT
CCGCGCCGGGGGGGTCATGGGCTTTGCGCTCACCTCGCTTGCGATCCTGA
TTTTGTACATCGCCCTACAGCTGTACAAGATTCAGTACCCGCGTAAGGAT
GAGTGGTTTATGATTATGGAGGCTATTTCCGGGTATGGTCTCGGAGGATC
TTCTATTGCCATGTTTGGGCGTGTGGGTGGGGGAATCTACACCAAGGCTG
CGGATGTCGGTGCGGATTTGGTGGGGAAGGTCGTACACGGGATCCCGGAG
GATGACCCTAGGAATCCGGCTGTGATTGCTGATAATGTGGGGGATAACGT
CGGGGATGTGGCGGGCATGGGCGCTGATTTGTTTGGCTCCTTTGCGGAGT
CGACGTGTGCAGCCTTGGTGATTGCGAGTCAGGCAGGCGAACTGGTGGAT
GGGGCGATCGAGAAGAATTACCTATTTGATTACTCGTGGAGTGCCGTGCT
TTTCCCCCTTGTGGTGTCGGCATCCGGCTTGATTATCTGCCTGTTGGCTT
CCTTCGTGGCCACTCACATGCTGCCTGTGCGCAAGGAGAGGGACGTGGAG
AACGCGCTTAAGATCCAGCTGATTGTCACGACCTTGGCCGTCGTCCCCGT
GGTGCTTGGGCTCGCCTACTGGTTCCTTCCCTCTGACTTCTCCGTGTCGG
GCGTGGGGGGGGCTGTGCCTAAGGGAAACCCGGCCAAGGCTGCTGGTGCC
GTTATTGCCGGTGCCGTGGGTGGACTGATCATTGGCTTGGTCACTGAATA
CTACACCTCTCATTCGTTTAGGCCCGTCCGAGACGTCGCCAATGCCTGCA
AGACCGGCGCGGCCACCAACATCATTTACGGTCTTGCCCTCGGGTATAAG
TCGTGCATTATTCCCGTGTTCATCCTTGCCATTGTCATTTTCATCGGTTT
CTACACCCTTAACATGTATGGCGTGGCTCTGGCCGCAATTGGTATGCTCG
TTACCCTGGCCACGGGCCTGACCATCGATGCGTACGGTCCCGTGTGCGAC
AACGCCGGGGGGATCGCCGAGATGGCCTTGCAAGACTACCCGGAGGTGCG
CGAGAAGACCGATGCCCTCGACGCGGCCGGCAACACCACCGCTGCTATCG
GCAAGGGTTTCGCCATTGGCTCTGCTGCCCTGGTCTCGCTCGCTTTGTAC
GGTGCCTTTGCTGTGCGTGTGGGCATCAGGAATGGGGTGAACATCCTGTC
CCCCGTAACTTTTGCCTTCCTTTTGATTGGCTCCAATTTGCCTTACTGGT
TCTCGGCTTTGACGATGAAGTCCGTCGGCACGGCCGCCATGGAAATGGTG
TTGGAGGTCGAGCGTCAATTCCGCGAATGCCCCGAGCTCCTGAACGAGGG
AACGAGCCTTCGACCTGATTATACGCGTTGTGTCGATATTTCGACCAAGG
CTGCGCTGCGTGAGATGGTCCCACCGGCGGCATTGGTGATGTTGTCGCCT
CTGATTGCCGGTACATTTTTTGGGAAGTACGCGGTGGCGGGTGTTCTGAC
CGGAGGCTTGGTTTCGGGCGTGCAACTGGCTGTATCCATGTCCAACACGG
GCGGGGCATGGGACAACGCCAAAAAGTACATTGAGAAGCAGAGCCCTGAC
AGCGAGCTGCAAGGGAAGGGATCGGACATCCACAAGGCGGCGGTGGTGGG
CGACACCGTGGGTGACCCATTGAAGGACACGTCCGGTCCCAGTCTGAATA
TTTTGATGAAGCTCATGGCTATCATCTCTCTGGTGTTTTCCCCTTACTTT
TTGGCCATCTATGACGGCAACGGCGTCTTCCACACCATCACTGAGAGCTC
GGCGACCTAA back to top
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