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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:327353..329095 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01020.1 vs.
Match: EWM21773.1 (mate efflux family protein [Nannochloropsis gaditana]) HSP 1 Score: 867.5 bits (2240), Expect = 2.400e-248 Identity = 458/571 (80.21%), Postives = 505/571 (88.44%), Query Frame = 0
Query: 1 MLYRKHCHGVSLLTLYLSFSTAFVFVRPVTSSTSNGLRLVPPSTTPKS--ALPPLPHYSTPTESPNTPSTLGIFLRGRGGAAFASLDPSKPNRLVAWLQTFAPGPDAPRAKKLDWEFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGGVGVAISAQYSVSKLYNDPLLRTSISLVAASEGSGGADNDKDKAEALSRSVSTALLLAGVVGLLQGIVYVFCAAPIIRAMGVLPGSEMYVPAVSYLRIRALGTPAATLWLVSNGIFRGLGDTLTPLKWSIIFTLLNAALDPLCMFTFGMGPSGAAMGTAIAQYVALLPLLLKVRQRARVRIDLADLLPSLGQYLRAASLVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQSLIARELGVLRAAATATASGAAGNGEMVEARTNLWHLIKRGCLLGAIVSGGLSVVTLFSKTSVLTGLTSDKAVQAAALSVFPVVMACQVNKGLAYPVNGIIMGGLDWGFSTMTMWLANIVCIGMLLLLRPNVGLSQLWAALSVFMAIQWVSGVIRFLSGTGIWGLLRRQ 570
+L RKHCHG+SLL +LSFSTAFVFVRP T+S N PS+T K+ LPPLP S+ P ++ + RGGA A + +KPNR++AWLQTFAPGPDAPR +KLDW+FLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGGVGVAISAQYSVSKLYNDPLLRTSISLVA+SEG+ +++ KA ALSRSVSTALLLAGVVGLLQG+VYV CAAPIIRAMGVLPGS MY PAVSYLRIRALGTPAATLWLVSNGIFRGLGDTLTPLKWS++FT+LNAALDPLCMFTFGMGPSGAAMGTAIAQYVAL PLLL+VRQRARVR++ ADLLPSLGQYLRAASLVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQSLIARELGVL+AA A+ASG A E+ EAR NLWHLIKRGC+LGA+VSGGLSVVTL SK++V+ GLTSD +VQA AL+VFP+VMACQVNKGLAYPVNGIIMGGLDWGFST+TMWLAN++CIG+LLL P+VGLS+LW ALSVFMAIQWVSGVIRF SGTG+W LLR +
Sbjct: 2 LLPRKHCHGISLLAFFLSFSTAFVFVRPATTSFCNPTHQSKPSSTVKANKTLPPLPQSSSSPRGPVRKNSPDPPFKWRGGAFAARIPGTKPNRVLAWLQTFAPGPDAPRKQKLDWDFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGGVGVAISAQYSVSKLYNDPLLRTSISLVASSEGADVGESEASKANALSRSVSTALLLAGVVGLLQGVVYVLCAAPIIRAMGVLPGSAMYDPAVSYLRIRALGTPAATLWLVSNGIFRGLGDTLTPLKWSLVFTVLNAALDPLCMFTFGMGPSGAAMGTAIAQYVALFPLLLRVRQRARVRLNFADLLPSLGQYLRAASLVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQSLIARELGVLKAATLASASGTASIREVEEARGNLWHLIKRGCVLGAMVSGGLSVVTLCSKSTVMRGLTSDLSVQATALAVFPLVMACQVNKGLAYPVNGIIMGGLDWGFSTVTMWLANVICIGLLLLWSPHVGLSELWTALSVFMAIQWVSGVIRFASGTGVWKLLRER 572
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01020.1 ID=NO13G01020.1|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp ATGCTGTACCGTAAGCACTGTCACGGCGTCTCACTGTTGACCCTTTACCT TTCATTTTCCACGGCCTTTGTCTTTGTGCGACCCGTCACGTCATCCACCT CTAATGGTCTCCGCCTCGTCCCGCCAAGTACCACACCCAAAAGCGCTCTT CCCCCACTGCCCCATTACTCCACCCCCACCGAAAGCCCCAATACTCCATC CACTCTCGGCATATTCCTGCGCGGACGCGGCGGCGCGGCTTTCGCGTCCC TAGATCCCTCTAAGCCAAATCGTCTGGTGGCCTGGCTACAAACTTTTGCC CCTGGTCCTGATGCGCCGCGGGCCAAGAAACTCGACTGGGAATTTCTGCG CATCGCCGCCCCTGCCTTTGTACAATTCACCGCCGAACCATTAGCGGGTC TGGTGGACACGGCATATTTAGGGAGATTGGGGCCCGTGGCGTTGGGTGGA GTGGGGGTGGCCATTTCGGCTCAATACTCTGTATCGAAGCTGTACAATGA CCCGCTCTTACGCACCAGCATTTCTCTTGTTGCCGCCAGTGAAGGTTCTG GGGGCGCAGACAACGACAAAGACAAGGCTGAGGCTCTTTCGCGATCCGTT AGCACAGCGTTGCTACTGGCGGGAGTGGTGGGGCTACTGCAAGGCATTGT GTACGTGTTCTGTGCCGCTCCGATCATTCGCGCCATGGGTGTTTTGCCAG GAAGCGAAATGTACGTCCCTGCCGTTTCTTACCTCCGAATCCGCGCCTTA GGCACACCTGCCGCCACGCTATGGCTTGTCTCAAATGGTATTTTTCGTGG TTTAGGTGATACCTTAACCCCACTGAAATGGAGCATTATTTTCACATTGT TGAATGCTGCCTTGGATCCGCTATGTATGTTCACTTTTGGGATGGGCCCT TCAGGTGCAGCCATGGGTACAGCCATCGCACAATACGTCGCCCTGCTCCC TTTGCTTCTGAAAGTAAGGCAGCGCGCGCGCGTTCGAATCGACCTGGCTG ACTTGCTCCCTTCCCTCGGTCAGTACCTCCGGGCGGCCTCTTTGGTGTTT GTCAGGACATGGGGAAAGATTCTGGCATATGCTTACTGTGCACGCCAGGC GGCCTTGCTGGGAGTGGTAGGCGCCGCAGCATATAACCTGACGTTTCAGG TTGGGTTCGCGACGACGCAGTTGTGCGAATCGATTGCGATTGCGGTGCAG TCGTTGATCGCCCGGGAGCTGGGCGTGCTCCGAGCAGCCGCGACGGCCAC TGCCTCTGGCGCGGCCGGTAATGGGGAGATGGTAGAAGCACGGACAAACC TTTGGCACTTGATTAAGCGCGGTTGTCTCCTCGGTGCGATCGTTTCGGGC GGACTTTCGGTTGTCACCTTGTTTAGTAAGACGTCCGTCTTGACCGGGCT GACCTCGGACAAGGCAGTGCAGGCCGCGGCGCTTTCAGTGTTCCCGGTGG TGATGGCTTGTCAAGTCAATAAGGGACTTGCGTACCCCGTGAATGGTATT ATTATGGGTGGGTTGGACTGGGGATTTTCAACCATGACCATGTGGTTGGC AAATATTGTGTGCATTGGCATGCTGCTACTATTGCGGCCTAACGTGGGCT TGTCACAGCTTTGGGCAGCGTTGAGTGTGTTCATGGCCATTCAGTGGGTG AGTGGTGTGATTCGCTTCTTGTCAGGCACGGGGATATGGGGACTGTTGCG GCGACAGCAAGATGATGTTGGAAGATGTGAGAAGAAAAGGTGA back to topprotein sequence of NO13G01020.1 >NO13G01020.1-protein ID=NO13G01020.1-protein|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp MLYRKHCHGVSLLTLYLSFSTAFVFVRPVTSSTSNGLRLVPPSTTPKSAL PPLPHYSTPTESPNTPSTLGIFLRGRGGAAFASLDPSKPNRLVAWLQTFA PGPDAPRAKKLDWEFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGG VGVAISAQYSVSKLYNDPLLRTSISLVAASEGSGGADNDKDKAEALSRSV STALLLAGVVGLLQGIVYVFCAAPIIRAMGVLPGSEMYVPAVSYLRIRAL GTPAATLWLVSNGIFRGLGDTLTPLKWSIIFTLLNAALDPLCMFTFGMGP SGAAMGTAIAQYVALLPLLLKVRQRARVRIDLADLLPSLGQYLRAASLVF VRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQ SLIARELGVLRAAATATASGAAGNGEMVEARTNLWHLIKRGCLLGAIVSG GLSVVTLFSKTSVLTGLTSDKAVQAAALSVFPVVMACQVNKGLAYPVNGI IMGGLDWGFSTMTMWLANIVCIGMLLLLRPNVGLSQLWAALSVFMAIQWV SGVIRFLSGTGIWGLLRRQQDDVGRCEKKR* back to topmRNA from alignment at chr13:327353..329095- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01020.1 ID=NO13G01020.1|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp|location=Sequence derived from alignment at chr13:327353..329095- (Nannochloropsis oceanica) ATGCTGTACCGTAAGCACTGTCACGGCGTCTCACTGTTGACCCTTTACCT
TTCATTTTCCACGGCCTTTGTCTTTGTGCGACCCGTCACGTCATCCACCT
CTAATGGTCTCCGCCTCGTCCCGCCAAGTACCACACCCAAAAGCGCTCTT
CCCCCACTGCCCCATTACTCCACCCCCACCGAAAGCCCCAATACTCCATC
CACTCTCGGCATATTCCTGCGCGGACGCGGCGGCGCGGCTTTCGCGTCCC
TAGATCCCTCTAAGCCAAATCGTCTGGTGGCCTGGCTACAAACTTTTGCC
CCTGGTCCTGATGCGCCGCGGGCCAAGAAACTCGACTGGGAATTTCTGCG
CATCGCCGCCCCTGCCTTTGTACAATTCACCGCCGAACCATTAGCGGGTC
TGGTGGACACGGCATATTTAGGGAGATTGGGGCCCGTGGCGTTGGGTGGA
GTGGGGGTGGCCATTTCGGCTCAATACTCTGTATCGAAGCTGTACAATGA
CCCGCTCTTACGCACCAGCATTTCTCTTGTTGCCGCCAGTGAAGGTTCTG
GGGGCGCAGACAACGACAAAGACAAGGCTGAGGCTCTTTCGCGATCCGTT
AGCACAGCGTTGCTACTGGCGGGAGTGGTGGGGCTACTGCAAGGCATTGT
GTACGTGTTCTGTGCCGCTCCGATCATTCGCGCCATGGGTGTTTTGCCAG
GAAGCGAAATGTACGTCCCTGCCGTTTCTTACCTCCGAATCCGCGCCTTA
GGCACACCTGCCGCCACGCTATGGCTTGTCTCAAATGGTATTTTTCGTGG
TTTAGGTGATACCTTAACCCCACTGAAATGGAGCATTATTTTCACATTGT
TGAATGCTGCCTTGGATCCGCTATGTATGTTCACTTTTGGGATGGGCCCT
TCAGGTGCAGCCATGGGTACAGCCATCGCACAATACGTCGCCCTGCTCCC
TTTGCTTCTGAAAGTAAGGCAGCGCGCGCGCGTTCGAATCGACCTGGCTG
ACTTGCTCCCTTCCCTCGGTCAGTACCTCCGGGCGGCCTCTTTGGTGTTT
GTCAGGACATGGGGAAAGATTCTGGCATATGCTTACTGTGCACGCCAGGC
GGCCTTGCTGGGAGTGGTAGGCGCCGCAGCATATAACCTGACGTTTCAGG
TTGGGTTCGCGACGACGCAGTTGTGCGAATCGATTGCGATTGCGGTGCAG
TCGTTGATCGCCCGGGAGCTGGGCGTGCTCCGAGCAGCCGCGACGGCCAC
TGCCTCTGGCGCGGCCGGTAATGGGGAGATGGTAGAAGCACGGACAAACC
TTTGGCACTTGATTAAGCGCGGTTGTCTCCTCGGTGCGATCGTTTCGGGC
GGACTTTCGGTTGTCACCTTGTTTAGTAAGACGTCCGTCTTGACCGGGCT
GACCTCGGACAAGGCAGTGCAGGCCGCGGCGCTTTCAGTGTTCCCGGTGG
TGATGGCTTGTCAAGTCAATAAGGGACTTGCGTACCCCGTGAATGGTATT
ATTATGGGTGGGTTGGACTGGGGATTTTCAACCATGACCATGTGGTTGGC
AAATATTGTGTGCATTGGCATGCTGCTACTATTGCGGCCTAACGTGGGCT
TGTCACAGCTTTGGGCAGCGTTGAGTGTGTTCATGGCCATTCAGTGGGTG
AGTGGTGTGATTCGCTTCTTGTCAGGCACGGGGATATGGGGACTGTTGCG
GCGACAGCAAGATGATGTTGGAAGATGTGAGAAGAAAAGGTGA back to topCoding sequence (CDS) from alignment at chr13:327353..329095- >NO13G01020.1 ID=NO13G01020.1|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr13:327353..329095- (Nannochloropsis oceanica) ATGCTGTACCGTAAGCACTGTCACGGCGTCTCACTGTTGACCCTTTACCT TTCATTTTCCACGGCCTTTGTCTTTGTGCGACCCGTCACGTCATCCACCT CTAATGGTCTCCGCCTCGTCCCGCCAAGTACCACACCCAAAAGCGCTCTT CCCCCACTGCCCCATTACTCCACCCCCACCGAAAGCCCCAATACTCCATC CACTCTCGGCATATTCCTGCGCGGACGCGGCGGCGCGGCTTTCGCGTCCC TAGATCCCTCTAAGCCAAATCGTCTGGTGGCCTGGCTACAAACTTTTGCC CCTGGTCCTGATGCGCCGCGGGCCAAGAAACTCGACTGGGAATTTCTGCG CATCGCCGCCCCTGCCTTTGTACAATTCACCGCCGAACCATTAGCGGGTC TGGTGGACACGGCATATTTAGGGAGATTGGGGCCCGTGGCGTTGGGTGGA GTGGGGGTGGCCATTTCGGCTCAATACTCTGTATCGAAGCTGTACAATGA CCCGCTCTTACGCACCAGCATTTCTCTTGTTGCCGCCAGTGAAGGTTCTG GGGGCGCAGACAACGACAAAGACAAGGCTGAGGCTCTTTCGCGATCCGTT AGCACAGCGTTGCTACTGGCGGGAGTGGTGGGGCTACTGCAAGGCATTGT GTACGTGTTCTGTGCCGCTCCGATCATTCGCGCCATGGGTGTTTTGCCAG GAAGCGAAATGTACGTCCCTGCCGTTTCTTACCTCCGAATCCGCGCCTTA GGCACACCTGCCGCCACGCTATGGCTTGTCTCAAATGGTATTTTTCGTGG TTTAGGTGATACCTTAACCCCACTGAAATGGAGCATTATTTTCACATTGT TGAATGCTGCCTTGGATCCGCTATGTATGTTCACTTTTGGGATGGGCCCT TCAGGTGCAGCCATGGGTACAGCCATCGCACAATACGTCGCCCTGCTCCC TTTGCTTCTGAAAGTAAGGCAGCGCGCGCGCGTTCGAATCGACCTGGCTG ACTTGCTCCCTTCCCTCGGTCAGTACCTCCGGGCGGCCTCTTTGGTGTTT GTCAGGACATGGGGAAAGATTCTGGCATATGCTTACTGTGCACGCCAGGC GGCCTTGCTGGGAGTGGTAGGCGCCGCAGCATATAACCTGACGTTTCAGG TTGGGTTCGCGACGACGCAGTTGTGCGAATCGATTGCGATTGCGGTGCAG TCGTTGATCGCCCGGGAGCTGGGCGTGCTCCGAGCAGCCGCGACGGCCAC TGCCTCTGGCGCGGCCGGTAATGGGGAGATGGTAGAAGCACGGACAAACC TTTGGCACTTGATTAAGCGCGGTTGTCTCCTCGGTGCGATCGTTTCGGGC GGACTTTCGGTTGTCACCTTGTTTAGTAAGACGTCCGTCTTGACCGGGCT GACCTCGGACAAGGCAGTGCAGGCCGCGGCGCTTTCAGTGTTCCCGGTGG TGATGGCTTGTCAAGTCAATAAGGGACTTGCGTACCCCGTGAATGGTATT ATTATGGGTGGGTTGGACTGGGGATTTTCAACCATGACCATGTGGTTGGC AAATATTGTGTGCATTGGCATGCTGCTACTATTGCGGCCTAACGTGGGCT TGTCACAGCTTTGGGCAGCGTTGAGTGTGTTCATGGCCATTCAGTGGGTG AGTGGTGTGATTCGCTTCTTGTCAGGCACGGGGATATGGGGACTGTTGCG GCGACAGCAAGATGATGTTGGAAGATGTGAGAAGAAAAGGTGA back to top
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