NO13G01020.1, NO13G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01020.1
Unique NameNO13G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1743
Alignment locationchr13:327353..329095 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:327353..329095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01020.1 vs.
Match: EWM21773.1 (mate efflux family protein [Nannochloropsis gaditana])

HSP 1 Score: 867.5 bits (2240), Expect = 2.400e-248
Identity = 458/571 (80.21%), Postives = 505/571 (88.44%), Query Frame = 0
Query:    1 MLYRKHCHGVSLLTLYLSFSTAFVFVRPVTSSTSNGLRLVPPSTTPKS--ALPPLPHYSTPTESPNTPSTLGIFLRGRGGAAFASLDPSKPNRLVAWLQTFAPGPDAPRAKKLDWEFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGGVGVAISAQYSVSKLYNDPLLRTSISLVAASEGSGGADNDKDKAEALSRSVSTALLLAGVVGLLQGIVYVFCAAPIIRAMGVLPGSEMYVPAVSYLRIRALGTPAATLWLVSNGIFRGLGDTLTPLKWSIIFTLLNAALDPLCMFTFGMGPSGAAMGTAIAQYVALLPLLLKVRQRARVRIDLADLLPSLGQYLRAASLVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQSLIARELGVLRAAATATASGAAGNGEMVEARTNLWHLIKRGCLLGAIVSGGLSVVTLFSKTSVLTGLTSDKAVQAAALSVFPVVMACQVNKGLAYPVNGIIMGGLDWGFSTMTMWLANIVCIGMLLLLRPNVGLSQLWAALSVFMAIQWVSGVIRFLSGTGIWGLLRRQ 570
            +L RKHCHG+SLL  +LSFSTAFVFVRP T+S  N      PS+T K+   LPPLP  S+    P   ++     + RGGA  A +  +KPNR++AWLQTFAPGPDAPR +KLDW+FLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGGVGVAISAQYSVSKLYNDPLLRTSISLVA+SEG+   +++  KA ALSRSVSTALLLAGVVGLLQG+VYV CAAPIIRAMGVLPGS MY PAVSYLRIRALGTPAATLWLVSNGIFRGLGDTLTPLKWS++FT+LNAALDPLCMFTFGMGPSGAAMGTAIAQYVAL PLLL+VRQRARVR++ ADLLPSLGQYLRAASLVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQSLIARELGVL+AA  A+ASG A   E+ EAR NLWHLIKRGC+LGA+VSGGLSVVTL SK++V+ GLTSD +VQA AL+VFP+VMACQVNKGLAYPVNGIIMGGLDWGFST+TMWLAN++CIG+LLL  P+VGLS+LW ALSVFMAIQWVSGVIRF SGTG+W LLR +
Sbjct:    2 LLPRKHCHGISLLAFFLSFSTAFVFVRPATTSFCNPTHQSKPSSTVKANKTLPPLPQSSSSPRGPVRKNSPDPPFKWRGGAFAARIPGTKPNRVLAWLQTFAPGPDAPRKQKLDWDFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGGVGVAISAQYSVSKLYNDPLLRTSISLVASSEGADVGESEASKANALSRSVSTALLLAGVVGLLQGVVYVLCAAPIIRAMGVLPGSAMYDPAVSYLRIRALGTPAATLWLVSNGIFRGLGDTLTPLKWSLVFTVLNAALDPLCMFTFGMGPSGAAMGTAIAQYVALFPLLLRVRQRARVRLNFADLLPSLGQYLRAASLVFVRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQSLIARELGVLKAATLASASGTASIREVEEARGNLWHLIKRGCVLGAMVSGGLSVVTLCSKSTVMRGLTSDLSVQATALAVFPLVMACQVNKGLAYPVNGIIMGGLDWGFSTVTMWLANVICIGLLLLWSPHVGLSELWTALSVFMAIQWVSGVIRFASGTGVWKLLRER 572          
The following BLAST results are available for this feature:
BLAST of NO13G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21773.12.400e-24880.21mate efflux family protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01020NO13G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01020.1NO13G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01020.1.cds1NO13G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01020.1 ID=NO13G01020.1|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGCTGTACCGTAAGCACTGTCACGGCGTCTCACTGTTGACCCTTTACCT
TTCATTTTCCACGGCCTTTGTCTTTGTGCGACCCGTCACGTCATCCACCT
CTAATGGTCTCCGCCTCGTCCCGCCAAGTACCACACCCAAAAGCGCTCTT
CCCCCACTGCCCCATTACTCCACCCCCACCGAAAGCCCCAATACTCCATC
CACTCTCGGCATATTCCTGCGCGGACGCGGCGGCGCGGCTTTCGCGTCCC
TAGATCCCTCTAAGCCAAATCGTCTGGTGGCCTGGCTACAAACTTTTGCC
CCTGGTCCTGATGCGCCGCGGGCCAAGAAACTCGACTGGGAATTTCTGCG
CATCGCCGCCCCTGCCTTTGTACAATTCACCGCCGAACCATTAGCGGGTC
TGGTGGACACGGCATATTTAGGGAGATTGGGGCCCGTGGCGTTGGGTGGA
GTGGGGGTGGCCATTTCGGCTCAATACTCTGTATCGAAGCTGTACAATGA
CCCGCTCTTACGCACCAGCATTTCTCTTGTTGCCGCCAGTGAAGGTTCTG
GGGGCGCAGACAACGACAAAGACAAGGCTGAGGCTCTTTCGCGATCCGTT
AGCACAGCGTTGCTACTGGCGGGAGTGGTGGGGCTACTGCAAGGCATTGT
GTACGTGTTCTGTGCCGCTCCGATCATTCGCGCCATGGGTGTTTTGCCAG
GAAGCGAAATGTACGTCCCTGCCGTTTCTTACCTCCGAATCCGCGCCTTA
GGCACACCTGCCGCCACGCTATGGCTTGTCTCAAATGGTATTTTTCGTGG
TTTAGGTGATACCTTAACCCCACTGAAATGGAGCATTATTTTCACATTGT
TGAATGCTGCCTTGGATCCGCTATGTATGTTCACTTTTGGGATGGGCCCT
TCAGGTGCAGCCATGGGTACAGCCATCGCACAATACGTCGCCCTGCTCCC
TTTGCTTCTGAAAGTAAGGCAGCGCGCGCGCGTTCGAATCGACCTGGCTG
ACTTGCTCCCTTCCCTCGGTCAGTACCTCCGGGCGGCCTCTTTGGTGTTT
GTCAGGACATGGGGAAAGATTCTGGCATATGCTTACTGTGCACGCCAGGC
GGCCTTGCTGGGAGTGGTAGGCGCCGCAGCATATAACCTGACGTTTCAGG
TTGGGTTCGCGACGACGCAGTTGTGCGAATCGATTGCGATTGCGGTGCAG
TCGTTGATCGCCCGGGAGCTGGGCGTGCTCCGAGCAGCCGCGACGGCCAC
TGCCTCTGGCGCGGCCGGTAATGGGGAGATGGTAGAAGCACGGACAAACC
TTTGGCACTTGATTAAGCGCGGTTGTCTCCTCGGTGCGATCGTTTCGGGC
GGACTTTCGGTTGTCACCTTGTTTAGTAAGACGTCCGTCTTGACCGGGCT
GACCTCGGACAAGGCAGTGCAGGCCGCGGCGCTTTCAGTGTTCCCGGTGG
TGATGGCTTGTCAAGTCAATAAGGGACTTGCGTACCCCGTGAATGGTATT
ATTATGGGTGGGTTGGACTGGGGATTTTCAACCATGACCATGTGGTTGGC
AAATATTGTGTGCATTGGCATGCTGCTACTATTGCGGCCTAACGTGGGCT
TGTCACAGCTTTGGGCAGCGTTGAGTGTGTTCATGGCCATTCAGTGGGTG
AGTGGTGTGATTCGCTTCTTGTCAGGCACGGGGATATGGGGACTGTTGCG
GCGACAGCAAGATGATGTTGGAAGATGTGAGAAGAAAAGGTGA
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protein sequence of NO13G01020.1

>NO13G01020.1-protein ID=NO13G01020.1-protein|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MLYRKHCHGVSLLTLYLSFSTAFVFVRPVTSSTSNGLRLVPPSTTPKSAL
PPLPHYSTPTESPNTPSTLGIFLRGRGGAAFASLDPSKPNRLVAWLQTFA
PGPDAPRAKKLDWEFLRIAAPAFVQFTAEPLAGLVDTAYLGRLGPVALGG
VGVAISAQYSVSKLYNDPLLRTSISLVAASEGSGGADNDKDKAEALSRSV
STALLLAGVVGLLQGIVYVFCAAPIIRAMGVLPGSEMYVPAVSYLRIRAL
GTPAATLWLVSNGIFRGLGDTLTPLKWSIIFTLLNAALDPLCMFTFGMGP
SGAAMGTAIAQYVALLPLLLKVRQRARVRIDLADLLPSLGQYLRAASLVF
VRTWGKILAYAYCARQAALLGVVGAAAYNLTFQVGFATTQLCESIAIAVQ
SLIARELGVLRAAATATASGAAGNGEMVEARTNLWHLIKRGCLLGAIVSG
GLSVVTLFSKTSVLTGLTSDKAVQAAALSVFPVVMACQVNKGLAYPVNGI
IMGGLDWGFSTMTMWLANIVCIGMLLLLRPNVGLSQLWAALSVFMAIQWV
SGVIRFLSGTGIWGLLRRQQDDVGRCEKKR*
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mRNA from alignment at chr13:327353..329095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01020.1 ID=NO13G01020.1|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp|location=Sequence derived from alignment at chr13:327353..329095- (Nannochloropsis oceanica)
ATGCTGTACCGTAAGCACTGTCACGGCGTCTCACTGTTGACCCTTTACCT TTCATTTTCCACGGCCTTTGTCTTTGTGCGACCCGTCACGTCATCCACCT CTAATGGTCTCCGCCTCGTCCCGCCAAGTACCACACCCAAAAGCGCTCTT CCCCCACTGCCCCATTACTCCACCCCCACCGAAAGCCCCAATACTCCATC CACTCTCGGCATATTCCTGCGCGGACGCGGCGGCGCGGCTTTCGCGTCCC TAGATCCCTCTAAGCCAAATCGTCTGGTGGCCTGGCTACAAACTTTTGCC CCTGGTCCTGATGCGCCGCGGGCCAAGAAACTCGACTGGGAATTTCTGCG CATCGCCGCCCCTGCCTTTGTACAATTCACCGCCGAACCATTAGCGGGTC TGGTGGACACGGCATATTTAGGGAGATTGGGGCCCGTGGCGTTGGGTGGA GTGGGGGTGGCCATTTCGGCTCAATACTCTGTATCGAAGCTGTACAATGA CCCGCTCTTACGCACCAGCATTTCTCTTGTTGCCGCCAGTGAAGGTTCTG GGGGCGCAGACAACGACAAAGACAAGGCTGAGGCTCTTTCGCGATCCGTT AGCACAGCGTTGCTACTGGCGGGAGTGGTGGGGCTACTGCAAGGCATTGT GTACGTGTTCTGTGCCGCTCCGATCATTCGCGCCATGGGTGTTTTGCCAG GAAGCGAAATGTACGTCCCTGCCGTTTCTTACCTCCGAATCCGCGCCTTA GGCACACCTGCCGCCACGCTATGGCTTGTCTCAAATGGTATTTTTCGTGG TTTAGGTGATACCTTAACCCCACTGAAATGGAGCATTATTTTCACATTGT TGAATGCTGCCTTGGATCCGCTATGTATGTTCACTTTTGGGATGGGCCCT TCAGGTGCAGCCATGGGTACAGCCATCGCACAATACGTCGCCCTGCTCCC TTTGCTTCTGAAAGTAAGGCAGCGCGCGCGCGTTCGAATCGACCTGGCTG ACTTGCTCCCTTCCCTCGGTCAGTACCTCCGGGCGGCCTCTTTGGTGTTT GTCAGGACATGGGGAAAGATTCTGGCATATGCTTACTGTGCACGCCAGGC GGCCTTGCTGGGAGTGGTAGGCGCCGCAGCATATAACCTGACGTTTCAGG TTGGGTTCGCGACGACGCAGTTGTGCGAATCGATTGCGATTGCGGTGCAG TCGTTGATCGCCCGGGAGCTGGGCGTGCTCCGAGCAGCCGCGACGGCCAC TGCCTCTGGCGCGGCCGGTAATGGGGAGATGGTAGAAGCACGGACAAACC TTTGGCACTTGATTAAGCGCGGTTGTCTCCTCGGTGCGATCGTTTCGGGC GGACTTTCGGTTGTCACCTTGTTTAGTAAGACGTCCGTCTTGACCGGGCT GACCTCGGACAAGGCAGTGCAGGCCGCGGCGCTTTCAGTGTTCCCGGTGG TGATGGCTTGTCAAGTCAATAAGGGACTTGCGTACCCCGTGAATGGTATT ATTATGGGTGGGTTGGACTGGGGATTTTCAACCATGACCATGTGGTTGGC AAATATTGTGTGCATTGGCATGCTGCTACTATTGCGGCCTAACGTGGGCT TGTCACAGCTTTGGGCAGCGTTGAGTGTGTTCATGGCCATTCAGTGGGTG AGTGGTGTGATTCGCTTCTTGTCAGGCACGGGGATATGGGGACTGTTGCG GCGACAGCAAGATGATGTTGGAAGATGTGAGAAGAAAAGGTGA
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Coding sequence (CDS) from alignment at chr13:327353..329095-

>NO13G01020.1 ID=NO13G01020.1|Name=NO13G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr13:327353..329095- (Nannochloropsis oceanica)
ATGCTGTACCGTAAGCACTGTCACGGCGTCTCACTGTTGACCCTTTACCT
TTCATTTTCCACGGCCTTTGTCTTTGTGCGACCCGTCACGTCATCCACCT
CTAATGGTCTCCGCCTCGTCCCGCCAAGTACCACACCCAAAAGCGCTCTT
CCCCCACTGCCCCATTACTCCACCCCCACCGAAAGCCCCAATACTCCATC
CACTCTCGGCATATTCCTGCGCGGACGCGGCGGCGCGGCTTTCGCGTCCC
TAGATCCCTCTAAGCCAAATCGTCTGGTGGCCTGGCTACAAACTTTTGCC
CCTGGTCCTGATGCGCCGCGGGCCAAGAAACTCGACTGGGAATTTCTGCG
CATCGCCGCCCCTGCCTTTGTACAATTCACCGCCGAACCATTAGCGGGTC
TGGTGGACACGGCATATTTAGGGAGATTGGGGCCCGTGGCGTTGGGTGGA
GTGGGGGTGGCCATTTCGGCTCAATACTCTGTATCGAAGCTGTACAATGA
CCCGCTCTTACGCACCAGCATTTCTCTTGTTGCCGCCAGTGAAGGTTCTG
GGGGCGCAGACAACGACAAAGACAAGGCTGAGGCTCTTTCGCGATCCGTT
AGCACAGCGTTGCTACTGGCGGGAGTGGTGGGGCTACTGCAAGGCATTGT
GTACGTGTTCTGTGCCGCTCCGATCATTCGCGCCATGGGTGTTTTGCCAG
GAAGCGAAATGTACGTCCCTGCCGTTTCTTACCTCCGAATCCGCGCCTTA
GGCACACCTGCCGCCACGCTATGGCTTGTCTCAAATGGTATTTTTCGTGG
TTTAGGTGATACCTTAACCCCACTGAAATGGAGCATTATTTTCACATTGT
TGAATGCTGCCTTGGATCCGCTATGTATGTTCACTTTTGGGATGGGCCCT
TCAGGTGCAGCCATGGGTACAGCCATCGCACAATACGTCGCCCTGCTCCC
TTTGCTTCTGAAAGTAAGGCAGCGCGCGCGCGTTCGAATCGACCTGGCTG
ACTTGCTCCCTTCCCTCGGTCAGTACCTCCGGGCGGCCTCTTTGGTGTTT
GTCAGGACATGGGGAAAGATTCTGGCATATGCTTACTGTGCACGCCAGGC
GGCCTTGCTGGGAGTGGTAGGCGCCGCAGCATATAACCTGACGTTTCAGG
TTGGGTTCGCGACGACGCAGTTGTGCGAATCGATTGCGATTGCGGTGCAG
TCGTTGATCGCCCGGGAGCTGGGCGTGCTCCGAGCAGCCGCGACGGCCAC
TGCCTCTGGCGCGGCCGGTAATGGGGAGATGGTAGAAGCACGGACAAACC
TTTGGCACTTGATTAAGCGCGGTTGTCTCCTCGGTGCGATCGTTTCGGGC
GGACTTTCGGTTGTCACCTTGTTTAGTAAGACGTCCGTCTTGACCGGGCT
GACCTCGGACAAGGCAGTGCAGGCCGCGGCGCTTTCAGTGTTCCCGGTGG
TGATGGCTTGTCAAGTCAATAAGGGACTTGCGTACCCCGTGAATGGTATT
ATTATGGGTGGGTTGGACTGGGGATTTTCAACCATGACCATGTGGTTGGC
AAATATTGTGTGCATTGGCATGCTGCTACTATTGCGGCCTAACGTGGGCT
TGTCACAGCTTTGGGCAGCGTTGAGTGTGTTCATGGCCATTCAGTGGGTG
AGTGGTGTGATTCGCTTCTTGTCAGGCACGGGGATATGGGGACTGTTGCG
GCGACAGCAAGATGATGTTGGAAGATGTGAGAAGAAAAGGTGA
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Synonyms
Publications