NO13G00960.1, NO13G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00960.1
Unique NameNO13G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2071
Alignment locationchr13:311116..313547 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:311116..313547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00960.1 vs.
Match: EWM21763.1 (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana]; EWM21764.1 hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 1.700e-43
Identity = 85/108 (78.70%), Postives = 99/108 (91.67%), Query Frame = 0 
Query:    1 MGLPCTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSVACFGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQ-VALNIERPSSYGATPR 108
            M LPCTTECCAPCCG+FSIIG +FLIILGIIV+KQPIF+HG+TEP  S+VAC+GGAGIYAGTLALC+ AWMYDKKKK+ RAA+AGLLK+E+ V+LNI+RP SYGAT R
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR 108
The following BLAST results are available for this feature:
BLAST of NO13G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21763.11.700e-4378.70hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00960NO13G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00960.1NO13G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00960.1.cds1NO13G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00960.1.cds2NO13G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00960.1.cds3NO13G00960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00960.1 ID=NO13G00960.1|Name=NO13G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp
ACAGGGGTTGGTTTGCTTGCTGGGTTGTGTGCGTCGACAGCAGCTGCGTT
TCCTTACCTCTTTCGGGACGACCTTTGGGACGAGAGAGGAACGGCAAGGT
CAACACGACGAGGCCAACTAGCATTTGTGTGCAAGACCCACACCGCGCGC
CTGCCTGTGACCACGCCGATAGCTAGCTCGACGACATCCACCACTGCAAG
ATGGGCCTGCCGTGCACGACTGAGTGCTGCGCGCCATGTTGCGGATTGTT
CTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGCATCATTGTTGAGA
AGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCGCAATTCCTCCGTG
GCGTGCTTTGGTGGCGCCGGTATATATGCAGGCACGCTGGCTTTGTGCAT
CGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCGGGCTGCTAGTG
CGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCGAACGGCCGAGT
TCTTACGGTGCGACCCCCCGCTAAGCTTGATTTGTGTGATTAATTACTTG
TAGTATATGATGTATCAGACACGTAAAACACCCGTATCTTATTCATTTGA
TTGCTTTAAATGTGTTGTTTGACATACAGGCGTATGAGAGATGGTTGTGC
CTTTCTTCTTCTTCATCTCTATTCCTTCCGCGGTGGTGATCTTGGCACAT
TGAGTGTATGACAAGACACATAATTTAGGATTTACAATACTGAGAAGCAC
CGCAGTGAGGATGTAGAGTGAGTAAGTGAGCCTTAGTTGTAGCGACAGAA
GCTGCTGGCGGTGGTACTGCCTCCTCCCCCACCTCTTCCTCCTTTTCTCC
TCCTCTTGCCCTCCCTCCTCCTCTTGTCCCGTGTGGTTTTCACCACCCGA
TACCGCCGCTGCTGTATCGGTTTTGTCATGCGCGCACCCCTTGTTGGGTT
GGGTCATGGACCCACAAGAAGAAGTACGAGGGAGGAAGGGAGGGAAGAGG
CGAACGAGCCTGAAGGCAGACAGGACAGGAAGAATAAAGTTGTTGTAGAG
CGAGGTCTTGAACAACTAGGAAAGGGAGTCTCGGCATCTCCACACCGCTT
GCCCTTTCCTCATGGCGTGCCGGTATGGTGCTTTGTCTTGTCTACTTCCT
TTCCAATTTCCTCCCTGCCCTCCCTCCTTTCTTGGAGGAGAGGTGCGGGA
TATGCTTAGCACTGATTGGGTTTTCTTCTTGTTCTTTTCTAACGTCTAAT
AAGAGGAAGGACACTGGTGATTTCAAAACGTGTCTTGAGAACAAGTGTGA
GCAATAGAATGGGAAGGGGGGGAAGCTGCGGAATTGACCTTCTTCGAGCA
ATCAGACTGCCCATCGAAACAACTAACATCCTTTTTCTTCCCTTCTTCCT
TCTGACCACAGATGCCGGTACTGAGATGACGCGAGTGGCTTCCCCAGGAC
GAAAGGCCTAAAGACAGGAAATAAGTGCGGGGGGAGGGCGGGACCATTAT
GGGAGATGAAATAACAACAATTACCAACAACAAATTGAGGATGATGGTGA
TCAAGGCAACACCCCTAGAATGGAGAAAATGAAGAGAGTCCTGCAGAGAA
GGAGGAAGAGCCACACATCAGTCGATCGTTGCCACGGCTGCTGCCGCGGT
GACATACTGTCAGCACCAGTATCTGTAGGATCAGGAACAGTAGGGAAGAG
AATGGTAAGGAGGGAAGGACGCGAACCGTAAAAAAGAGGGGACTTCTTTT
TTATTTATTAATTCATTTGTATCCTTGACCATGTGTGGAGGCGGTTCCGT
GCTGGGGAAGACGGTGATGAGATGGGAAGAGCGGACTTACCTTCCTGGCG
TCAGGGTCAAGGCGCCTGCCTCTGTCACTCTCGTTCGGAATTATAGAGCG
ACCGATAAATATTTTGTGAAAGAAAATAGGAAAGGGGGAAAAGAGGGAGA
AAGATAGGGAGCAAAACAGATAGAGAGTATATGATCAGGGGAAGAGAAAA
GAAGAAGAAACCAGCACGCAAATATACCGACGCAAACCTGTCTGTCGATG
AACGAGAAGAAAGAAGAATCA
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protein sequence of NO13G00960.1

>NO13G00960.1-protein ID=NO13G00960.1-protein|Name=NO13G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MGLPCTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSV
ACFGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQVALNIERPS
SYGATPR*
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mRNA from alignment at chr13:311116..313547+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00960.1 ID=NO13G00960.1|Name=NO13G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2432bp|location=Sequence derived from alignment at chr13:311116..313547+ (Nannochloropsis oceanica)
ACAGGGGTTGGTTTGCTTGCTGGGTTGTGTGCGTCGACAGCAGCTGCGTT
TCCTTACCTCTTTCGGGACGACCTTTGGGACGAGAGAGGAACGGCAAGGT
CAACACGACGAGGCCAACTAGCATTTGTGTGCAAGACCCACACCGCGCGC
CTGCCTGTGACCACGCCGATAGCTAGCTCGACGACATCCACCACTGCAAG
ATGGGCCTGCCGTGCACGACTGAGTGCTGTAAGTAGTAGTGATCTGACCG
CAAGAAAAATCTCTCCGCTCCTGTCTGCCTCTGTCCCGTCCCTCATCGGT
GCAACCACCACCTGAATCCACTCCCGATTCTCTCCCACGCACACCCTGCC
ATCTTTCCCTCTCCTCTTTCTCCATAACAGGCGCGCCATGTTGCGGATTG
TTCTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGCATCATTGTTGA
GAAGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCGCAATTCCTCCG
TGGCGTGCTTTGGTGGCGGTACGTCAGAGAAGAGAGACGGAGGGAGTGTG
GGATCGAAGAAAGGAGAGGGTGACTGTTGAGTCGAGAGATGTGACAAGGC
TGCATGTCTATCGATATGTTGAAGATTCGTTCGTCTGGATTCCTCTCACC
CTCCTCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCTCCCC
TTTTCTGCTTCGCCTCCACCCCTTCAGCCGGTATATATGCAGGCACGCTG
GCTTTGTGCATCGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCG
GGCTGCTAGTGCGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCG
AACGGCCGAGTTCTTACGGTGCGACCCCCCGCTAAGCTTGATTTGTGTGA
TTAATTACTTGTAGTATATGATGTATCAGACACGTAAAACACCCGTATCT
TATTCATTTGATTGCTTTAAATGTGTTGTTTGACATACAGGCGTATGAGA
GATGGTTGTGCCTTTCTTCTTCTTCATCTCTATTCCTTCCGCGGTGGTGA
TCTTGGCACATTGAGTGTATGACAAGACACATAATTTAGGATTTACAATA
CTGAGAAGCACCGCAGTGAGGATGTAGAGTGAGTAAGTGAGCCTTAGTTG
TAGCGACAGAAGCTGCTGGCGGTGGTACTGCCTCCTCCCCCACCTCTTCC
TCCTTTTCTCCTCCTCTTGCCCTCCCTCCTCCTCTTGTCCCGTGTGGTTT
TCACCACCCGATACCGCCGCTGCTGTATCGGTTTTGTCATGCGCGCACCC
CTTGTTGGGTTGGGTCATGGACCCACAAGAAGAAGTACGAGGGAGGAAGG
GAGGGAAGAGGCGAACGAGCCTGAAGGCAGACAGGACAGGAAGAATAAAG
TTGTTGTAGAGCGAGGTCTTGAACAACTAGGAAAGGGAGTCTCGGCATCT
CCACACCGCTTGCCCTTTCCTCATGGCGTGCCGGTATGGTGCTTTGTCTT
GTCTACTTCCTTTCCAATTTCCTCCCTGCCCTCCCTCCTTTCTTGGAGGA
GAGGTGCGGGATATGCTTAGCACTGATTGGGTTTTCTTCTTGTTCTTTTC
TAACGTCTAATAAGAGGAAGGACACTGGTGATTTCAAAACGTGTCTTGAG
AACAAGTGTGAGCAATAGAATGGGAAGGGGGGGAAGCTGCGGAATTGACC
TTCTTCGAGCAATCAGACTGCCCATCGAAACAACTAACATCCTTTTTCTT
CCCTTCTTCCTTCTGACCACAGATGCCGGTACTGAGATGACGCGAGTGGC
TTCCCCAGGACGAAAGGCCTAAAGACAGGAAATAAGTGCGGGGGGAGGGC
GGGACCATTATGGGAGATGAAATAACAACAATTACCAACAACAAATTGAG
GATGATGGTGATCAAGGCAACACCCCTAGAATGGAGAAAATGAAGAGAGT
CCTGCAGAGAAGGAGGAAGAGCCACACATCAGTCGATCGTTGCCACGGCT
GCTGCCGCGGTGACATACTGTCAGCACCAGTATCTGTAGGATCAGGAACA
GTAGGGAAGAGAATGGTAAGGAGGGAAGGACGCGAACCGTAAAAAAGAGG
GGACTTCTTTTTTATTTATTAATTCATTTGTATCCTTGACCATGTGTGGA
GGCGGTTCCGTGCTGGGGAAGACGGTGATGAGATGGGAAGAGCGGACTTA
CCTTCCTGGCGTCAGGGTCAAGGCGCCTGCCTCTGTCACTCTCGTTCGGA
ATTATAGAGCGACCGATAAATATTTTGTGAAAGAAAATAGGAAAGGGGGA
AAAGAGGGAGAAAGATAGGGAGCAAAACAGATAGAGAGTATATGATCAGG
GGAAGAGAAAAGAAGAAGAAACCAGCACGCAAATATACCGACGCAAACCT
GTCTGTCGATGAACGAGAAGAAAGAAGAATCA
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Coding sequence (CDS) from alignment at chr13:311116..313547+

>NO13G00960.1 ID=NO13G00960.1|Name=NO13G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at chr13:311116..313547+ (Nannochloropsis oceanica)
ATGGGCCTGCCGTGCACGACTGAGTGCTGCGCGCCATGTTGCGGATTGTT
CTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGCATCATTGTTGAGA
AGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCGCAATTCCTCCGTG
GCGTGCTTTGGTGGCGCCGGTATATATGCAGGCACGCTGGCTTTGTGCAT
CGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCGGGCTGCTAGTG
CGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCGAACGGCCGAGT
TCTTACGGTGCGACCCCCCGCTAA
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Synonyms
Publications