NO13G00910.1, NO13G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00910.1
Unique NameNO13G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length896
Alignment locationchr13:294540..295543 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:294540..295543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00910.1 vs.
Match: EWM21758.1 (26s proteasome non-atpase regulatory subunit 9 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 9.000e-70
Identity = 158/264 (59.85%), Postives = 184/264 (69.70%), Query Frame = 0 
Query:    1 MPNDLGAELDDLIKERDILEAEAAAITDFLTSPGPGDGAPPGLRGDSLVDDEGFPRADIDVWDVRVKRNRLACIETDHAELMKRIEELVQQLHQEAKAKAALRETSSSNNVAPARSEGQQPHLPKTTGNTTSSGALTHDPTALEGWERVEKKEG---TSKQPFALIDQVFRASPAEESGMKAGDMLVSFGGVDAENHGHFTAIVNLVQNSVGQPVRVVVLRKEEEEEGTLSSSSSSSRLVTLSLIPHTWSGRGLLGCHLTALSS 262
            M  D  +EL++LIKERD LE EAA I DFLTSPGPG  APPGL G  LVD EGFPRADIDVWDVRVKRNRLACI+TDHAELMKRIEELVQ+LHQEAK  A +R    SNN + + S G+       T    S       PTA    E    +EG   + +QPFA+IDQVFRASPAEE+G+K GD+LVS G V+A+NH +F AIV LVQ + G+ +RV V R +E   G   SS+     V +SLIPH WSGRGLLGCHLTA+SS
Sbjct:    1 MHYDARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVR--GMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGG-PSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS 261
The following BLAST results are available for this feature:
BLAST of NO13G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21758.19.000e-7059.8526s proteasome non-atpase regulatory subunit 9 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00910NO13G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00910.1NO13G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00910.1.cds1NO13G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00910.1.cds2NO13G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00910.1 ID=NO13G00910.1|Name=NO13G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=896bp
ACAGGCCGAAGGAGTAGTTATGCCTAATGATTTGGGCGCGGAGCTGGACG
ATCTCATCAAGGAACGCGACATCTTGGAGGCCGAGGCGGCGGCCATCACG
GACTTCTTGACCTCGCCCGGTCCCGGTGATGGGGCTCCCCCGGGCTTGCG
TGGCGATTCCTTGGTCGACGACGAAGGCTTCCCACGGGCCGACATAGATG
TTTGGGATGTGCGGGTGAAACGCAATCGCCTCGCCTGCATCGAGACGGAC
CACGCCGAACTTATGAAGCGGATTGAGGAGCTCGTGCAGCAGCTCCATCA
AGAAGCCAAGGCCAAGGCAGCGCTCCGTGAAACCAGCAGCAGCAACAATG
TGGCTCCAGCCCGGTCGGAAGGGCAACAACCCCACCTCCCCAAGACCACC
GGCAACACTACCTCCTCCGGTGCACTCACACACGACCCCACAGCTTTAGA
AGGATGGGAAAGAGTGGAGAAGAAAGAAGGAACTTCAAAGCAACCATTCG
CCCTGATTGACCAGGTCTTTCGTGCCTCGCCTGCGGAAGAGTCAGGGATG
AAAGCAGGAGACATGCTGGTGAGTTTCGGGGGCGTTGACGCGGAGAACCA
CGGCCACTTTACAGCCATCGTAAACCTGGTTCAAAACAGTGTGGGGCAGC
CTGTCCGAGTGGTGGTATTGCGGAAGGAAGAGGAGGAGGAGGGAACGCTG
TCGTCGTCCTCCTCTTCGTCCCGACTAGTGACTCTGTCCTTGATTCCACA
CACATGGAGCGGCCGAGGCTTGCTTGGGTGTCATTTGACCGCCTTGTCAT
CTTAAGTGGGAAAATATCGGGAGTGAGAGTGGAAGAGACGCAGCTGTGGG
TGGAGAGGAAAGGATAAAAGACAAGAAAACAATGCTTTCTGTACAC
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protein sequence of NO13G00910.1

>NO13G00910.1-protein ID=NO13G00910.1-protein|Name=NO13G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MPNDLGAELDDLIKERDILEAEAAAITDFLTSPGPGDGAPPGLRGDSLVD
DEGFPRADIDVWDVRVKRNRLACIETDHAELMKRIEELVQQLHQEAKAKA
ALRETSSSNNVAPARSEGQQPHLPKTTGNTTSSGALTHDPTALEGWERVE
KKEGTSKQPFALIDQVFRASPAEESGMKAGDMLVSFGGVDAENHGHFTAI
VNLVQNSVGQPVRVVVLRKEEEEEGTLSSSSSSSRLVTLSLIPHTWSGRG
LLGCHLTALSS*
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mRNA from alignment at chr13:294540..295543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00910.1 ID=NO13G00910.1|Name=NO13G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1004bp|location=Sequence derived from alignment at chr13:294540..295543- (Nannochloropsis oceanica)
ACAGGCCGAAGGAGTAGTTATGCCTAATGATTTGGGCGCGGAGCTGGACG
ATGTGAGTTGGATGTAGTGATGAGGGTAGGGAGGTATGGGGGAAGGAGAG
GGCGGGGCATGTTCTGCCGCTCTCAATTCGCCTTTTTACACTGCAACGCA
CCACACACAGCTCATCAAGGAACGCGACATCTTGGAGGCCGAGGCGGCGG
CCATCACGGACTTCTTGACCTCGCCCGGTCCCGGTGATGGGGCTCCCCCG
GGCTTGCGTGGCGATTCCTTGGTCGACGACGAAGGCTTCCCACGGGCCGA
CATAGATGTTTGGGATGTGCGGGTGAAACGCAATCGCCTCGCCTGCATCG
AGACGGACCACGCCGAACTTATGAAGCGGATTGAGGAGCTCGTGCAGCAG
CTCCATCAAGAAGCCAAGGCCAAGGCAGCGCTCCGTGAAACCAGCAGCAG
CAACAATGTGGCTCCAGCCCGGTCGGAAGGGCAACAACCCCACCTCCCCA
AGACCACCGGCAACACTACCTCCTCCGGTGCACTCACACACGACCCCACA
GCTTTAGAAGGATGGGAAAGAGTGGAGAAGAAAGAAGGAACTTCAAAGCA
ACCATTCGCCCTGATTGACCAGGTCTTTCGTGCCTCGCCTGCGGAAGAGT
CAGGGATGAAAGCAGGAGACATGCTGGTGAGTTTCGGGGGCGTTGACGCG
GAGAACCACGGCCACTTTACAGCCATCGTAAACCTGGTTCAAAACAGTGT
GGGGCAGCCTGTCCGAGTGGTGGTATTGCGGAAGGAAGAGGAGGAGGAGG
GAACGCTGTCGTCGTCCTCCTCTTCGTCCCGACTAGTGACTCTGTCCTTG
ATTCCACACACATGGAGCGGCCGAGGCTTGCTTGGGTGTCATTTGACCGC
CTTGTCATCTTAAGTGGGAAAATATCGGGAGTGAGAGTGGAAGAGACGCA
GCTGTGGGTGGAGAGGAAAGGATAAAAGACAAGAAAACAATGCTTTCTGT
ACAC
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Coding sequence (CDS) from alignment at chr13:294540..295543-

>NO13G00910.1 ID=NO13G00910.1|Name=NO13G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr13:294540..295543- (Nannochloropsis oceanica)
ATGCCTAATGATTTGGGCGCGGAGCTGGACGATCTCATCAAGGAACGCGA
CATCTTGGAGGCCGAGGCGGCGGCCATCACGGACTTCTTGACCTCGCCCG
GTCCCGGTGATGGGGCTCCCCCGGGCTTGCGTGGCGATTCCTTGGTCGAC
GACGAAGGCTTCCCACGGGCCGACATAGATGTTTGGGATGTGCGGGTGAA
ACGCAATCGCCTCGCCTGCATCGAGACGGACCACGCCGAACTTATGAAGC
GGATTGAGGAGCTCGTGCAGCAGCTCCATCAAGAAGCCAAGGCCAAGGCA
GCGCTCCGTGAAACCAGCAGCAGCAACAATGTGGCTCCAGCCCGGTCGGA
AGGGCAACAACCCCACCTCCCCAAGACCACCGGCAACACTACCTCCTCCG
GTGCACTCACACACGACCCCACAGCTTTAGAAGGATGGGAAAGAGTGGAG
AAGAAAGAAGGAACTTCAAAGCAACCATTCGCCCTGATTGACCAGGTCTT
TCGTGCCTCGCCTGCGGAAGAGTCAGGGATGAAAGCAGGAGACATGCTGG
TGAGTTTCGGGGGCGTTGACGCGGAGAACCACGGCCACTTTACAGCCATC
GTAAACCTGGTTCAAAACAGTGTGGGGCAGCCTGTCCGAGTGGTGGTATT
GCGGAAGGAAGAGGAGGAGGAGGGAACGCTGTCGTCGTCCTCCTCTTCGT
CCCGACTAGTGACTCTGTCCTTGATTCCACACACATGGAGCGGCCGAGGC
TTGCTTGGGTGTCATTTGACCGCCTTGTCATCTTAA
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Synonyms
Publications