NO13G00860.1, NO13G00860.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00860.1
Unique Name	NO13G00860.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2367
Alignment location	chr13:282064..284430 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:282064..284430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G00860.1 vs.
Match: EWM21756.1 (bifunctional polynucleotide phosphatase kinase [Nannochloropsis gaditana])

HSP 1 Score: 375.2 bits (962), Expect = 4.600e-100
Identity = 263/572 (45.98%), Postives = 334/572 (58.39%), Query Frame = 0

Query:    1 MALSTAKPSSSSFLKGVHVYFLGLSNTFAQPATKALQANSGRVIPP--KISSFFQKAAAV--SVSKHFPPDMTHVLCG-DKYQDASPASILMDLGVEGPLPSSIKVVHHSWLSECLKMKRCVDTTPFEIDMQAKPFAPAEDGGGGGGGGGGDRGGDDVSGKHPARGDQPQGAST-NGKRPRLDISSNIFADDSLPPAPPLLQGHTP-KRLSYSFIPP-------------------NQEWLMYDVGLLHLRVHPAAAAAAAAAAASINYNTE--------SIPESCTSPVSSPPPAPPSF-----PIRIAAFDLDSTLIKTRSQKSFAASPTDWQWFHPSVPPTLKALHQEGYKVVIISNQRGIESKNTDLSSLLQRLASVVSALKIPEIEGYFATHHSVFYKPAPGSWYLLEEKYRGGGGGRKEGGGEEGIDTANSFFVGDAAGRPKQGKMRGRDHSDSDLKLAVNVGGIGFKTPEEFFLGSRLSCDKGEVLKAAIERERR---SAVEEYVVVRRKGSGCRTSNGSTGLPSSTLSTGE-HGQSVTPPSVPPSVPP-SPPTRQEAVLLLGPP 529
            M ++ +   S  FLKGVH YFLGLS+  A+ A K ++   G++IPP  KI   FQKA AV  SV K  P  +THVLC  D  + +SP SIL  L V+GPLPSS+ VV   WLSECL++   VDT P+E+DM A P    EDG   G G       D+ +       ++ +G +    KRPR+        DD+L PAPPLL+   P +RLS+ F+PP                   + E     + L    V P + A+ A   AS   +          S+P++ + P+S   P   +      P+RIAAFDLDSTLIKTRS+ +FA+SPTDWQWF PSVP +L++LH++GYK+VIISNQRGIESK TDLSSLLQRL+SVV+AL +P +EG+FATH +VFYKPAPGSWYLLEE+Y             EGID + SFFVGDAAGRPKQG  R RDH D DLK AVNV G+ F+TPEE F  SR   D G     A+ER RR   S V  Y  +R  G G    + + G   ++  TGE  G+ V  P  PP++P    PT  E   + G P
Sbjct:    1 MRMAPSSGESPLFLKGVHAYFLGLSSKIAEAARKGVEKQGGKIIPPRAKIPPMFQKAKAVADSVGKSLPQGVTHVLCDPDICRQSSPDSILRALDVQGPLPSSVVVVRLPWLSECLRLGHRVDTGPYEVDMNAAPTRLPEDGLTPGRGVKHKTCPDEATQST----EEDEGPTAPRHKRPRIIKCQ----DDTLLPAPPLLESREPPRRLSFPFLPPSQVWSLHDLGLLHLRVQNADTEAPRPAMALREDAVMPPSLASPAPPIASSPASLPRPSAPSPPSLPDAHSVPISPATPRAQTSSVSAPPVRIAAFDLDSTLIKTRSEGAFASSPTDWQWFAPSVPASLRSLHEQGYKIVIISNQRGIESKKTDLSSLLQRLSSVVAALHLPGLEGFFATHTNVFYKPAPGSWYLLEERY------------PEGIDVSRSFFVGDAAGRPKQGPFRPRDHGDGDLKFAVNV-GLAFQTPEECFHKSRSPRDAG---AEAVERLRRAWVSPVRGY--LREAGMG---GSEAAGAACTSRCTGEGEGRRVDAP--PPTLPKYGGPTCSETGPVSGDP 541

The following BLAST results are available for this feature:

BLAST of NO13G00860.1 vs.

BLAST of NO13G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21756.1	4.600e-100	45.98	bifunctional polynucleotide phosphatase kinase [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00860	NO13G00860	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00860.1	NO13G00860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00860.1.cds1	NO13G00860.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:282064..284430+
coding sequence from alignment at chr13:282064..284430+

mRNA sequence

>NO13G00860.1 ID=NO13G00860.1|Name=NO13G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp
CAGCTCAATACGTCACATGACAGATACAGACCATGGCTCTGTCGACCGCC
AAGCCTTCCTCCTCCTCCTTTCTCAAGGGCGTGCATGTCTATTTCCTTGG
ACTGAGCAACACATTCGCCCAACCTGCCACCAAAGCTCTGCAAGCAAATA
GTGGCCGTGTCATTCCGCCTAAAATATCGTCCTTTTTTCAGAAAGCTGCT
GCGGTCAGTGTCAGCAAGCATTTTCCCCCGGACATGACCCACGTGCTGTG
CGGTGACAAGTATCAGGACGCATCGCCTGCTTCCATTCTCATGGACTTAG
GCGTGGAAGGCCCGCTTCCCTCTTCAATCAAGGTGGTCCATCACTCCTGG
CTTTCAGAATGCCTGAAAATGAAGAGGTGCGTGGATACCACCCCTTTCGA
GATTGACATGCAGGCAAAACCTTTTGCGCCAGCTGAAGATGGCGGCGGTG
GCGGCGGTGGCGGCGGTGGCGACAGAGGCGGCGATGACGTGTCAGGCAAG
CACCCAGCACGGGGTGACCAGCCGCAAGGCGCTAGCACCAATGGGAAACG
TCCTCGACTAGATATCTCCTCCAACATCTTCGCTGATGACTCCCTGCCTC
CCGCCCCACCTCTGCTGCAAGGCCACACACCCAAACGCCTCTCCTATTCT
TTCATACCCCCCAACCAAGAATGGCTCATGTACGACGTGGGCCTCTTGCA
TCTTCGAGTCCATCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCT
CAATCAATTACAACACTGAATCCATTCCTGAGTCCTGCACTTCCCCTGTT
TCGTCCCCTCCCCCTGCCCCACCTTCATTCCCCATACGTATCGCCGCTTT
TGACCTAGACTCAACCCTCATCAAAACCCGCTCGCAAAAATCCTTCGCCG
CCTCTCCCACGGACTGGCAATGGTTCCATCCCTCCGTCCCTCCCACCCTC
AAAGCCCTCCACCAGGAAGGGTATAAAGTTGTCATCATCTCAAACCAACG
AGGCATAGAGAGCAAGAACACCGACCTTTCCTCCCTCCTTCAGCGCCTCG
CCTCTGTGGTTTCCGCCTTGAAGATCCCAGAAATCGAAGGATATTTTGCC
ACGCATCACAGCGTATTCTATAAACCGGCCCCAGGGAGTTGGTATCTGCT
GGAGGAGAAGTATAGAGGAGGAGGGGGGGGGAGAAAGGAAGGAGGAGGGG
AGGAGGGGATTGATACAGCAAATAGTTTTTTCGTGGGCGACGCGGCAGGG
CGGCCGAAACAGGGCAAGATGAGGGGGAGGGATCACAGTGACAGTGATCT
GAAATTAGCGGTAAATGTGGGAGGGATAGGGTTCAAGACCCCGGAGGAAT
TCTTTTTGGGAAGTAGGCTGAGCTGTGATAAAGGAGAGGTGTTGAAGGCG
GCGATTGAGAGGGAGAGGAGGAGCGCGGTGGAGGAGTATGTGGTCGTGAG
AAGGAAGGGATCCGGCTGTAGGACCAGCAATGGGAGCACCGGCCTTCCCT
CCTCAACTTTGTCCACAGGAGAGCATGGACAATCCGTCACCCCTCCCTCC
GTCCCTCCCTCCGTCCCTCCCTCGCCTCCGACGCGCCAAGAAGCCGTCCT
TCTTCTCGGCCCCCCCGCCTGTGGGAAGTCCACTTACTGCCACATCCACC
TCCCCCACCACACCCGCATAAACCAAGATACGCTCAAGTCCCTAAACAAA
TGCCAACGTGCCGCTTTGGAAGCCCTGGAGAAAGGAGAGAGCATCGTCAT
CGACGCCACGAATGCCACGTCCAAGCTCCGGAAGCAATGGGTGCACCTCC
TACGCTCCTGCCCCTTGCCCTCCCTCCCTTCCTCCTCCTCCTCCTCGACC
TTTCTTCTTCTCAAGGTTGTGGAGTTCCTCCCTCCTAAGGTAGCCACCAT
ACACCTTAATTTCTTTCGAGGCATTAACCTAGACGCGACTGCTGTGGAAG
GGAGGGAGGGAGGGAGAGCAGAAGGGGCCGACTTTCTCCGCTGTGTACCT
GAGAGGGTGATTCACTCATTCTTTAAATTTATCGAGCCTGTGAAAGAGGA
CGGAGGGAAGGAGGAAGGATTCGAGGAGCACGTGCAGGTAAAGGAGTTGG
TGTTGAAGCCATTTAGAAACCGGAGGGAAGCGCATTTGTTTGGGTGTTAT
TTGCCATCCATCCGGTAGTCAGGACGTCATACATGCATGATGTTGCTCGC
CCTTACCCCCTACTGCCACCTCTGAGGAAAGGTTGAAGCCAAATAGAAGG
AGACAAGAGGGCATGCTATACTCCTCTACTAGCTGGAAAAGTAAATCGAA
CGGAAATAGCAAAAGACATGAGGCAATCCCTTTCACAAAAGGGAAACCAG
CAAATGTATTCAAATCC

protein sequence of NO13G00860.1

>NO13G00860.1-protein ID=NO13G00860.1-protein|Name=NO13G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MALSTAKPSSSSFLKGVHVYFLGLSNTFAQPATKALQANSGRVIPPKISS
FFQKAAAVSVSKHFPPDMTHVLCGDKYQDASPASILMDLGVEGPLPSSIK
VVHHSWLSECLKMKRCVDTTPFEIDMQAKPFAPAEDGGGGGGGGGGDRGG
DDVSGKHPARGDQPQGASTNGKRPRLDISSNIFADDSLPPAPPLLQGHTP
KRLSYSFIPPNQEWLMYDVGLLHLRVHPAAAAAAAAAAASINYNTESIPE
SCTSPVSSPPPAPPSFPIRIAAFDLDSTLIKTRSQKSFAASPTDWQWFHP
SVPPTLKALHQEGYKVVIISNQRGIESKNTDLSSLLQRLASVVSALKIPE
IEGYFATHHSVFYKPAPGSWYLLEEKYRGGGGGRKEGGGEEGIDTANSFF
VGDAAGRPKQGKMRGRDHSDSDLKLAVNVGGIGFKTPEEFFLGSRLSCDK
GEVLKAAIERERRSAVEEYVVVRRKGSGCRTSNGSTGLPSSTLSTGEHGQ
SVTPPSVPPSVPPSPPTRQEAVLLLGPPACGKSTYCHIHLPHHTRINQDT
LKSLNKCQRAALEALEKGESIVIDATNATSKLRKQWVHLLRSCPLPSLPS
SSSSSTFLLLKVVEFLPPKVATIHLNFFRGINLDATAVEGREGGRAEGAD
FLRCVPERVIHSFFKFIEPVKEDGGKEEGFEEHVQVKELVLKPFRNRREA
HLFGCYLPSIR*

mRNA from alignment at chr13:282064..284430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G00860.1 ID=NO13G00860.1|Name=NO13G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr13:282064..284430+ (Nannochloropsis oceanica)
CAGCTCAATACGTCACATGACAGATACAGACCATGGCTCTGTCGACCGCC
AAGCCTTCCTCCTCCTCCTTTCTCAAGGGCGTGCATGTCTATTTCCTTGG
ACTGAGCAACACATTCGCCCAACCTGCCACCAAAGCTCTGCAAGCAAATA
GTGGCCGTGTCATTCCGCCTAAAATATCGTCCTTTTTTCAGAAAGCTGCT
GCGGTCAGTGTCAGCAAGCATTTTCCCCCGGACATGACCCACGTGCTGTG
CGGTGACAAGTATCAGGACGCATCGCCTGCTTCCATTCTCATGGACTTAG
GCGTGGAAGGCCCGCTTCCCTCTTCAATCAAGGTGGTCCATCACTCCTGG
CTTTCAGAATGCCTGAAAATGAAGAGGTGCGTGGATACCACCCCTTTCGA
GATTGACATGCAGGCAAAACCTTTTGCGCCAGCTGAAGATGGCGGCGGTG
GCGGCGGTGGCGGCGGTGGCGACAGAGGCGGCGATGACGTGTCAGGCAAG
CACCCAGCACGGGGTGACCAGCCGCAAGGCGCTAGCACCAATGGGAAACG
TCCTCGACTAGATATCTCCTCCAACATCTTCGCTGATGACTCCCTGCCTC
CCGCCCCACCTCTGCTGCAAGGCCACACACCCAAACGCCTCTCCTATTCT
TTCATACCCCCCAACCAAGAATGGCTCATGTACGACGTGGGCCTCTTGCA
TCTTCGAGTCCATCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCT
CAATCAATTACAACACTGAATCCATTCCTGAGTCCTGCACTTCCCCTGTT
TCGTCCCCTCCCCCTGCCCCACCTTCATTCCCCATACGTATCGCCGCTTT
TGACCTAGACTCAACCCTCATCAAAACCCGCTCGCAAAAATCCTTCGCCG
CCTCTCCCACGGACTGGCAATGGTTCCATCCCTCCGTCCCTCCCACCCTC
AAAGCCCTCCACCAGGAAGGGTATAAAGTTGTCATCATCTCAAACCAACG
AGGCATAGAGAGCAAGAACACCGACCTTTCCTCCCTCCTTCAGCGCCTCG
CCTCTGTGGTTTCCGCCTTGAAGATCCCAGAAATCGAAGGATATTTTGCC
ACGCATCACAGCGTATTCTATAAACCGGCCCCAGGGAGTTGGTATCTGCT
GGAGGAGAAGTATAGAGGAGGAGGGGGGGGGAGAAAGGAAGGAGGAGGGG
AGGAGGGGATTGATACAGCAAATAGTTTTTTCGTGGGCGACGCGGCAGGG
CGGCCGAAACAGGGCAAGATGAGGGGGAGGGATCACAGTGACAGTGATCT
GAAATTAGCGGTAAATGTGGGAGGGATAGGGTTCAAGACCCCGGAGGAAT
TCTTTTTGGGAAGTAGGCTGAGCTGTGATAAAGGAGAGGTGTTGAAGGCG
GCGATTGAGAGGGAGAGGAGGAGCGCGGTGGAGGAGTATGTGGTCGTGAG
AAGGAAGGGATCCGGCTGTAGGACCAGCAATGGGAGCACCGGCCTTCCCT
CCTCAACTTTGTCCACAGGAGAGCATGGACAATCCGTCACCCCTCCCTCC
GTCCCTCCCTCCGTCCCTCCCTCGCCTCCGACGCGCCAAGAAGCCGTCCT
TCTTCTCGGCCCCCCCGCCTGTGGGAAGTCCACTTACTGCCACATCCACC
TCCCCCACCACACCCGCATAAACCAAGATACGCTCAAGTCCCTAAACAAA
TGCCAACGTGCCGCTTTGGAAGCCCTGGAGAAAGGAGAGAGCATCGTCAT
CGACGCCACGAATGCCACGTCCAAGCTCCGGAAGCAATGGGTGCACCTCC
TACGCTCCTGCCCCTTGCCCTCCCTCCCTTCCTCCTCCTCCTCCTCGACC
TTTCTTCTTCTCAAGGTTGTGGAGTTCCTCCCTCCTAAGGTAGCCACCAT
ACACCTTAATTTCTTTCGAGGCATTAACCTAGACGCGACTGCTGTGGAAG
GGAGGGAGGGAGGGAGAGCAGAAGGGGCCGACTTTCTCCGCTGTGTACCT
GAGAGGGTGATTCACTCATTCTTTAAATTTATCGAGCCTGTGAAAGAGGA
CGGAGGGAAGGAGGAAGGATTCGAGGAGCACGTGCAGGTAAAGGAGTTGG
TGTTGAAGCCATTTAGAAACCGGAGGGAAGCGCATTTGTTTGGGTGTTAT
TTGCCATCCATCCGGTAGTCAGGACGTCATACATGCATGATGTTGCTCGC
CCTTACCCCCTACTGCCACCTCTGAGGAAAGGTTGAAGCCAAATAGAAGG
AGACAAGAGGGCATGCTATACTCCTCTACTAGCTGGAAAAGTAAATCGAA
CGGAAATAGCAAAAGACATGAGGCAATCCCTTTCACAAAAGGGAAACCAG
CAAATGTATTCAAATCC

Coding sequence (CDS) from alignment at chr13:282064..284430+

>NO13G00860.1 ID=NO13G00860.1|Name=NO13G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr13:282064..284430+ (Nannochloropsis oceanica)
ATGGCTCTGTCGACCGCCAAGCCTTCCTCCTCCTCCTTTCTCAAGGGCGT
GCATGTCTATTTCCTTGGACTGAGCAACACATTCGCCCAACCTGCCACCA
AAGCTCTGCAAGCAAATAGTGGCCGTGTCATTCCGCCTAAAATATCGTCC
TTTTTTCAGAAAGCTGCTGCGGTCAGTGTCAGCAAGCATTTTCCCCCGGA
CATGACCCACGTGCTGTGCGGTGACAAGTATCAGGACGCATCGCCTGCTT
CCATTCTCATGGACTTAGGCGTGGAAGGCCCGCTTCCCTCTTCAATCAAG
GTGGTCCATCACTCCTGGCTTTCAGAATGCCTGAAAATGAAGAGGTGCGT
GGATACCACCCCTTTCGAGATTGACATGCAGGCAAAACCTTTTGCGCCAG
CTGAAGATGGCGGCGGTGGCGGCGGTGGCGGCGGTGGCGACAGAGGCGGC
GATGACGTGTCAGGCAAGCACCCAGCACGGGGTGACCAGCCGCAAGGCGC
TAGCACCAATGGGAAACGTCCTCGACTAGATATCTCCTCCAACATCTTCG
CTGATGACTCCCTGCCTCCCGCCCCACCTCTGCTGCAAGGCCACACACCC
AAACGCCTCTCCTATTCTTTCATACCCCCCAACCAAGAATGGCTCATGTA
CGACGTGGGCCTCTTGCATCTTCGAGTCCATCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCCTCAATCAATTACAACACTGAATCCATTCCTGAG
TCCTGCACTTCCCCTGTTTCGTCCCCTCCCCCTGCCCCACCTTCATTCCC
CATACGTATCGCCGCTTTTGACCTAGACTCAACCCTCATCAAAACCCGCT
CGCAAAAATCCTTCGCCGCCTCTCCCACGGACTGGCAATGGTTCCATCCC
TCCGTCCCTCCCACCCTCAAAGCCCTCCACCAGGAAGGGTATAAAGTTGT
CATCATCTCAAACCAACGAGGCATAGAGAGCAAGAACACCGACCTTTCCT
CCCTCCTTCAGCGCCTCGCCTCTGTGGTTTCCGCCTTGAAGATCCCAGAA
ATCGAAGGATATTTTGCCACGCATCACAGCGTATTCTATAAACCGGCCCC
AGGGAGTTGGTATCTGCTGGAGGAGAAGTATAGAGGAGGAGGGGGGGGGA
GAAAGGAAGGAGGAGGGGAGGAGGGGATTGATACAGCAAATAGTTTTTTC
GTGGGCGACGCGGCAGGGCGGCCGAAACAGGGCAAGATGAGGGGGAGGGA
TCACAGTGACAGTGATCTGAAATTAGCGGTAAATGTGGGAGGGATAGGGT
TCAAGACCCCGGAGGAATTCTTTTTGGGAAGTAGGCTGAGCTGTGATAAA
GGAGAGGTGTTGAAGGCGGCGATTGAGAGGGAGAGGAGGAGCGCGGTGGA
GGAGTATGTGGTCGTGAGAAGGAAGGGATCCGGCTGTAGGACCAGCAATG
GGAGCACCGGCCTTCCCTCCTCAACTTTGTCCACAGGAGAGCATGGACAA
TCCGTCACCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCGCCTCCGAC
GCGCCAAGAAGCCGTCCTTCTTCTCGGCCCCCCCGCCTGTGGGAAGTCCA
CTTACTGCCACATCCACCTCCCCCACCACACCCGCATAAACCAAGATACG
CTCAAGTCCCTAAACAAATGCCAACGTGCCGCTTTGGAAGCCCTGGAGAA
AGGAGAGAGCATCGTCATCGACGCCACGAATGCCACGTCCAAGCTCCGGA
AGCAATGGGTGCACCTCCTACGCTCCTGCCCCTTGCCCTCCCTCCCTTCC
TCCTCCTCCTCCTCGACCTTTCTTCTTCTCAAGGTTGTGGAGTTCCTCCC
TCCTAAGGTAGCCACCATACACCTTAATTTCTTTCGAGGCATTAACCTAG
ACGCGACTGCTGTGGAAGGGAGGGAGGGAGGGAGAGCAGAAGGGGCCGAC
TTTCTCCGCTGTGTACCTGAGAGGGTGATTCACTCATTCTTTAAATTTAT
CGAGCCTGTGAAAGAGGACGGAGGGAAGGAGGAAGGATTCGAGGAGCACG
TGCAGGTAAAGGAGTTGGTGTTGAAGCCATTTAGAAACCGGAGGGAAGCG
CATTTGTTTGGGTGTTATTTGCCATCCATCCGGTAG

Synonyms

Publications