NO13G00840.1, NO13G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00840.1
Unique NameNO13G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length261
Alignment locationchr13:277733..278191 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:277733..278191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00840NO13G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00840.1NO13G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00840.1.cds1NO13G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00840.1.cds2NO13G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00840.1 ID=NO13G00840.1|Name=NO13G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=261bp
ATGAGGGACGAGAGTAAGCTTCGGAAGGCCGGAGCTATTGTGGGGAGAGT
GAGCGTGCTTTCTTGTCCAGGGAAGGGACGCATGCTGGGGGTGGAGATGG
GGGGCATTCTTTTCGACTACATAAAAGGGGACGGGCACAGTGGAAGAAGG
TTCTTAAAGCGGTGGGCGGAAGCCTCCCAGGTTATTAGCTTGATGTTGGC
GGTCGCCAGCTTAACTGCTGTGACAGTTTGTAAATACGACCAGGACAATG
CGGCGCCGTAA
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protein sequence of NO13G00840.1

>NO13G00840.1-protein ID=NO13G00840.1-protein|Name=NO13G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MRDESKLRKAGAIVGRVSVLSCPGKGRMLGVEMGGILFDYIKGDGHSGRR
FLKRWAEASQVISLMLAVASLTAVTVCKYDQDNAAP*
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mRNA from alignment at chr13:277733..278191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00840.1 ID=NO13G00840.1|Name=NO13G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=459bp|location=Sequence derived from alignment at chr13:277733..278191- (Nannochloropsis oceanica)
ATGAGGGACGAGAGTAAGCTTCGGAAGGCCGGAGCTATTGTGGGGAGAGT
GAGCGTGCTTTCTTGTCCAGGTAAAGTGACTTGTATATTAATGTATTTTG
GGAGGGTTTGTTGGTGGTGGGCCGAAAGAAAAACGTTCTTTGCACACGAC
TGCATACTATCCACATTTCCGTCGACCTGCCTGTCTCGTTAGATTTTCAA
TATTTGTTATGCGGGCAAGGATCCATGCCTAGCTGACCATGCACACGTAC
AATCATACACGTCAAAAGGGAAGGGACGCATGCTGGGGGTGGAGATGGGG
GGCATTCTTTTCGACTACATAAAAGGGGACGGGCACAGTGGAAGAAGGTT
CTTAAAGCGGTGGGCGGAAGCCTCCCAGGTTATTAGCTTGATGTTGGCGG
TCGCCAGCTTAACTGCTGTGACAGTTTGTAAATACGACCAGGACAATGCG
GCGCCGTAA
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Coding sequence (CDS) from alignment at chr13:277733..278191-

>NO13G00840.1 ID=NO13G00840.1|Name=NO13G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at chr13:277733..278191- (Nannochloropsis oceanica)
ATGAGGGACGAGAGTAAGCTTCGGAAGGCCGGAGCTATTGTGGGGAGAGT
GAGCGTGCTTTCTTGTCCAGGGAAGGGACGCATGCTGGGGGTGGAGATGG
GGGGCATTCTTTTCGACTACATAAAAGGGGACGGGCACAGTGGAAGAAGG
TTCTTAAAGCGGTGGGCGGAAGCCTCCCAGGTTATTAGCTTGATGTTGGC
GGTCGCCAGCTTAACTGCTGTGACAGTTTGTAAATACGACCAGGACAATG
CGGCGCCGTAA
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Synonyms
Publications