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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:274228..276965 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00830.2 vs.
Match: XP_005855321.1 (ankyrin unc44 [Nannochloropsis gaditana CCMP526]; EKU21040.1 ankyrin unc44 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 641.0 bits (1652), Expect = 2.800e-180 Identity = 335/439 (76.31%), Postives = 376/439 (85.65%), Query Frame = 0
Query: 2 GGGQTALHLAAIAGHSDAVQSLIDLGADLNRVNHISSATPLHLAAMGRGTRERKLQVISALVAAGADCFVEDRYQSQPHHYAHDETMRLAMKGPDFKLHSAILNRDIGLLTQHLKALDSPEQVNEWGPDGNTPLHVAACIPCPSSVSALIRAGANPNERNEHGTTALHTAASVLSEEVASLLLKAGAAINEKSILVDEYSSKGVNWVESPAPSPRGALSSPTMGSD---GSGGSKEGKPSPRSRKEYKDEAAAEHETPLHVAVRKGALCMARFLLQRGAAVDSTDRAGKTSLHLALENLLEASRIGNAAETQGCLGLVRLLLESGACPLLSNQVLGKKWTTVHWAVQHGNVDALEVLVAHTFGSTKQQLLDAQDERGLTALMLAAREGKVGCLEALLRNGADAGLRNVEGMSARDLAAAAGMEAALCIIDTFATFASMA 438
GGGQTALHLAAIAGH DAV+ LIDLGA +N+VN ISSATPLHLAAMGRGTRERKLQVISALVAAGADCF+EDRYQSQP HYAHDE MRLAMKGPDFKLH AILNRD L Q L+ LDS EQ+N GPDGNTPLHVAA I CP +V+AL++AGANPNERNEHGT ALHTAA+VLSEE+A LLL+AGAAI+ KS LVDEYSSKG NWVESP PS RGALSSP G D G GG+ EGKPSPRSRKEYK AAEHET LHVAVRKG + MA+FL+ RGAA D TDRAGKT LH+ALE LL+ASRIGN AETQGC+ +VRLLLE+GACP N + G++ TT+HWA Q G+VDALEVLV +TFG +Q+LLDAQD++G+TA+M AA+EGKVGCLEALLRNGADA +RN EG++ARD+AAA GM AALCIIDTFATFAS+A
Sbjct: 84 GGGQTALHLAAIAGHVDAVRCLIDLGASVNKVNDISSATPLHLAAMGRGTRERKLQVISALVAAGADCFIEDRYQSQPWHYAHDEAMRLAMKGPDFKLHKAILNRDEPALRQLLQTLDSSEQLNAVGPDGNTPLHVAASIACPIAVAALLKAGANPNERNEHGTMALHTAANVLSEEIADLLLQAGAAIDGKSFLVDEYSSKGQNWVESPDPSSRGALSSPAFGMDRDVGDGGA-EGKPSPRSRKEYKSVTAAEHETALHVAVRKGGVPMAKFLMARGAAPDLTDRAGKTPLHVALECLLDASRIGNGAETQGCMEMVRLLLENGACPRRGNPLWGRQRTTLHWAAQCGHVDALEVLVGYTFGLNRQRLLDAQDDKGMTAVMCAAQEGKVGCLEALLRNGADASIRNAEGLTARDIAAAGGMAAALCIIDTFATFASVA 521
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00830.2 ID=NO13G00830.2|Name=NO13G00830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2650bp
CGCCTTCTTCCTCTCGGGAATACCATACGAGGACTCTATTTCTTTTCCTT
TGAGAGCACAGCCATGTAATAAGGTGGACTGAGGAAAATTTCGTGCACTT
TTTGTGCTATCCGTAGTCCGGATCCTACGTCTTTTGAAATTGTGTTCGAC
CTTACCCCCACAAGATTGTCGCTCTGCCCCCGTGTGAATGGATCGCCATG
ACATCCCCCCATCTAACACGTAGCCCATTCCTCCATCTCTTTCAATTTGC
CCAGCCCGAGAGACACGGAACTTCTTTGCTTTCCATTCTTATGCCATGGG
CGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGG
ACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGG
GGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGA
ATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTG
TGCAGGTAAGTTGATATCAGACACTACGCTTTAATAATGGTTACGTGTCA
AATGCAGAATCATCGTGTGAGCGTGCGCCTTCTTTTTCTGCGCCCGCCTC
CCCTCGTTCCTTGCAGATAAGTTGCGCGCCGCGCTCCTCGTAGGTGACGT
TTTATCTTCTTTAAACGGTGTGGTGCGTCCTGGGACACTTTAGCTCTTAC
ATCGAACCTCTTTTCCACCACAAAAAAACAGAGAGGGGTTCCCGTCGACG
GGGCAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTATC
GCCGGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATTT
GAATAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGCCA
TGGGAAGGGGCACGCGCGAGCGCAAACTTCAAGTAATCTCAGCGCTTGTG
GCGGCGGGCGCGGACTGCTTTGTCGAGGATCGGTATCAAAGTCAACCCCA
CCACTACGCTCACGACGAAACTATGCGCTTGGCCATGAAGGGTCCTGACT
TCAAACTCCACTCAGCCATATTAAACCGAGACATTGGCCTACTTACGCAG
CACTTGAAGGCCTTGGATTCTCCCGAGCAAGTGAATGAGTGGGGACCCGA
CGGTAATACACCATTACACGTCGCAGCTTGTATCCCATGCCCTTCTTCCG
TCAGCGCCTTGATCCGAGCAGGCGCCAACCCCAACGAACGCAATGAGCAC
GGTACAACCGCGCTTCACACGGCTGCAAGCGTCCTGAGCGAGGAGGTCGC
GAGCCTGCTGTTGAAAGCTGGTGCGGCGATCAACGAGAAGAGCATCTTAG
TTGACGAGTACAGTAGCAAAGGAGTGAACTGGGTTGAGTCGCCCGCTCCC
TCTCCTCGCGGGGCTTTGTCTTCTCCAACAATGGGGAGTGACGGCAGCGG
TGGAAGTAAAGAAGGGAAACCGTCTCCGCGTAGTCGCAAGGAGTACAAGG
ATGAGGCGGCGGCGGAGCACGAGACTCCTCTCCATGTGGCGGTCCGCAAG
GGTGCTTTGTGTATGGCGCGCTTTTTGTTGCAACGAGGCGCGGCAGTAGA
CAGCACGGACCGGGCAGGCAAGACATCTCTACATCTAGCCTTGGAGAATT
TGTTGGAAGCAAGTCGGATTGGAAACGCAGCGGAGACACAGGGATGCTTG
GGGCTGGTGCGACTGCTGCTGGAAAGCGGTGCGTGCCCTCTGCTGAGTAA
TCAAGTGCTGGGAAAGAAGTGGACGACCGTACACTGGGCTGTACAGCATG
GGAATGTGGATGCATTGGAAGTTTTGGTCGCGCATACGTTCGGCTCGACG
AAACAACAGCTTTTGGACGCCCAAGATGAGAGGGGGTTGACAGCGTTGAT
GCTGGCGGCAAGGGAGGGAAAGGTTGGGTGTTTGGAAGCATTGCTTCGAA
ATGGAGCAGACGCAGGCTTGAGAAATGTTGAAGGAATGTCAGCGAGAGAC
TTGGCGGCTGCGGCAGGGATGGAGGCGGCCCTGTGTATTATCGACACATT
TGCGACGTTTGCGTCGATGGCGTGAGGGAGGGAGACAGCAAGAGAGGGAA
AGAAACAAAGGACGCCGCGAGACGGCCATTTAAAGTGGAAATAATTGCAG
CATTTGATGTGACTTGTCCTCACGGTAATGCTCATATAGTATACAAACAA
GCATATGAAGGTATAAGTATAGTAAATTGGAGGGGAGATTGAAATTGAAA
GAGGAAATCGGTAGGGCGGGACGCGAGGAGACTCAGTCCACACAGAAAGG
AAATTAGGTTCACCAACAGGAAAAGAGGGGGAGATAAAAGTAAAATGGGC
GAGGAGCTTCTTCATTTGACATATGGCCTGCATCTTGAAAGGGAAATACT
GTTGTGCAGCGCTGGTGCCCACATTCTTAGTTTAAAGCAGCAACACATTT
AAATATTAATAGAAATCGGCGGATTTGCGCAGCACTTGAGACAAGCTTCA
CAAAAGAATTGTGGCATGCGCTGGACTATTCATTTTACAGTAAGGAACCT
TTTGGACGATTTAAAAGATGAATAAGCGTGGCCATGTGATGTGAAGTCGG
CATATTACACTGATTTGATGAAAGTAAATAATACAATGAAGTGAAACGGA back to topprotein sequence of NO13G00830.2 >NO13G00830.2-protein ID=NO13G00830.2-protein|Name=NO13G00830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MGGGQTALHLAAIAGHSDAVQSLIDLGADLNRVNHISSATPLHLAAMGRG
TRERKLQVISALVAAGADCFVEDRYQSQPHHYAHDETMRLAMKGPDFKLH
SAILNRDIGLLTQHLKALDSPEQVNEWGPDGNTPLHVAACIPCPSSVSAL
IRAGANPNERNEHGTTALHTAASVLSEEVASLLLKAGAAINEKSILVDEY
SSKGVNWVESPAPSPRGALSSPTMGSDGSGGSKEGKPSPRSRKEYKDEAA
AEHETPLHVAVRKGALCMARFLLQRGAAVDSTDRAGKTSLHLALENLLEA
SRIGNAAETQGCLGLVRLLLESGACPLLSNQVLGKKWTTVHWAVQHGNVD
ALEVLVAHTFGSTKQQLLDAQDERGLTALMLAAREGKVGCLEALLRNGAD
AGLRNVEGMSARDLAAAAGMEAALCIIDTFATFASMA* back to topmRNA from alignment at chr13:274228..276965+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00830.2 ID=NO13G00830.2|Name=NO13G00830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp|location=Sequence derived from alignment at chr13:274228..276965+ (Nannochloropsis oceanica)
CGCCTTCTTCCTCTCGGGAATACCATACGAGGACTCTATTTCTTTTCCTT
TGAGAGCACAGCCATGTAATAAGGTGGACTGAGGAAAATTTCGTGCACTT
TTTGTGCTATCCGTAGTCCGGATCCTACGTCTTTTGAAATTGTGTTCGAC
CTTACCCCCACAAGATTGTCGCTCTGCCCCCGTGTGAATGGATCGCCATG
ACATCCCCCCATCTAACACGTAGCCCATTCCTCCATCTCTTTCAATTTGC
CCAGCCCGAGAGACACGGAACTTCTTTGCTTTCCATTCTTATGCCATGGG
CGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGG
ACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGG
GGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGA
ATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTG
TGCAGGTAAGTTGATATCAGACACTACGCTTTAATAATGGTTACGTGTCA
AATGCAGAATCATCGTGTGAGCGTGCGCCTTCTTTTTCTGCGCCCGCCTC
CCCTCGTTCCTTGCAGATAAGTTGCGCGCCGCGCTCCTCGTAGGTGACGT
TTTATCTTCTTTAAACGGTGTGGTGCGTCCTGGGACACTTTAGCTCTTAC
ATCGAACCTCTTTTCCACCACAAAAAAACAGAGAGGGGTTCCCGTCGACG
GGGCAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTATC
GCCGGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATTT
GAATAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGGTA
TGTGAAGAAAGGGTATTAAGGTGTCCGTCGCCTTCTGGCTGGCTTGCATT
CACTCATGCCTTTTTCTCTCCATACACATTTACAGCCATGGGAAGGGGCA
CGCGCGAGCGCAAACTTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGCG
GACTGCTTTGTCGAGGATCGGTATCAAAGTCAACCCCACCACTACGCTCA
CGACGAAACTATGCGCTTGGCCATGAAGGGTCCTGACTTCAAACTCCACT
CAGCCATATTAAACCGAGACATTGGCCTACTTACGCAGCACTTGAAGGCC
TTGGATTCTCCCGAGCAAGTGAATGAGTGGGGACCCGACGGTAATACACC
ATTACACGTCGCAGCTTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTGA
TCCGAGCAGGCGCCAACCCCAACGAACGCAATGAGCACGGTACAACCGCG
CTTCACACGGCTGCAAGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGTT
GAAAGCTGGTGCGGCGATCAACGAGAAGAGCATCTTAGTTGACGAGTACA
GTAGCAAAGGAGTGAACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGGG
GCTTTGTCTTCTCCAACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAGA
AGGGAAACCGTCTCCGCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCGG
CGGAGCACGAGACTCCTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTGT
ATGGCGCGCTTTTTGTTGCAACGAGGCGCGGCAGTAGACAGCACGGACCG
GGCAGGCAAGACATCTCTACATCTAGCCTTGGAGAATTTGTTGGAAGCAA
GTCGGATTGGAAACGCAGCGGAGACACAGGGATGCTTGGGGCTGGTGCGA
CTGCTGCTGGAAAGCGGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGGG
AAAGAAGTGGACGACCGTACACTGGGCTGTACAGCATGGGAATGTGGATG
CATTGGAAGTTTTGGTCGCGCATACGTTCGGCTCGACGAAACAACAGCTT
TTGGACGCCCAAGATGAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAAG
GGAGGGAAAGGTTGGGTGTTTGGAAGCATTGCTTCGAAATGGAGCAGACG
CAGGCTTGAGAAATGTTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGCG
GCAGGGATGGAGGCGGCCCTGTGTATTATCGACACATTTGCGACGTTTGC
GTCGATGGCGTGAGGGAGGGAGACAGCAAGAGAGGGAAAGAAACAAAGGA
CGCCGCGAGACGGCCATTTAAAGTGGAAATAATTGCAGCATTTGATGTGA
CTTGTCCTCACGGTAATGCTCATATAGTATACAAACAAGCATATGAAGGT
ATAAGTATAGTAAATTGGAGGGGAGATTGAAATTGAAAGAGGAAATCGGT
AGGGCGGGACGCGAGGAGACTCAGTCCACACAGAAAGGAAATTAGGTTCA
CCAACAGGAAAAGAGGGGGAGATAAAAGTAAAATGGGCGAGGAGCTTCTT
CATTTGACATATGGCCTGCATCTTGAAAGGGAAATACTGTTGTGCAGCGC
TGGTGCCCACATTCTTAGTTTAAAGCAGCAACACATTTAAATATTAATAG
AAATCGGCGGATTTGCGCAGCACTTGAGACAAGCTTCACAAAAGAATTGT
GGCATGCGCTGGACTATTCATTTTACAGTAAGGAACCTTTTGGACGATTT
AAAAGATGAATAAGCGTGGCCATGTGATGTGAAGTCGGCATATTACACTG
ATTTGATGAAAGTAAATAATACAATGAAGTGAAACGGA back to topCoding sequence (CDS) from alignment at chr13:274228..276965+ >NO13G00830.2 ID=NO13G00830.2|Name=NO13G00830.2|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr13:274228..276965+ (Nannochloropsis oceanica)
ATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTATCGCCGGACACTC
CGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATTTGAATAGGGTAA
ACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGCCATGGGAAGGGGC
ACGCGCGAGCGCAAACTTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGC
GGACTGCTTTGTCGAGGATCGGTATCAAAGTCAACCCCACCACTACGCTC
ACGACGAAACTATGCGCTTGGCCATGAAGGGTCCTGACTTCAAACTCCAC
TCAGCCATATTAAACCGAGACATTGGCCTACTTACGCAGCACTTGAAGGC
CTTGGATTCTCCCGAGCAAGTGAATGAGTGGGGACCCGACGGTAATACAC
CATTACACGTCGCAGCTTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTG
ATCCGAGCAGGCGCCAACCCCAACGAACGCAATGAGCACGGTACAACCGC
GCTTCACACGGCTGCAAGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGT
TGAAAGCTGGTGCGGCGATCAACGAGAAGAGCATCTTAGTTGACGAGTAC
AGTAGCAAAGGAGTGAACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGG
GGCTTTGTCTTCTCCAACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAG
AAGGGAAACCGTCTCCGCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCG
GCGGAGCACGAGACTCCTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTG
TATGGCGCGCTTTTTGTTGCAACGAGGCGCGGCAGTAGACAGCACGGACC
GGGCAGGCAAGACATCTCTACATCTAGCCTTGGAGAATTTGTTGGAAGCA
AGTCGGATTGGAAACGCAGCGGAGACACAGGGATGCTTGGGGCTGGTGCG
ACTGCTGCTGGAAAGCGGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGG
GAAAGAAGTGGACGACCGTACACTGGGCTGTACAGCATGGGAATGTGGAT
GCATTGGAAGTTTTGGTCGCGCATACGTTCGGCTCGACGAAACAACAGCT
TTTGGACGCCCAAGATGAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAA
GGGAGGGAAAGGTTGGGTGTTTGGAAGCATTGCTTCGAAATGGAGCAGAC
GCAGGCTTGAGAAATGTTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGC
GGCAGGGATGGAGGCGGCCCTGTGTATTATCGACACATTTGCGACGTTTG
CGTCGATGGCGTGA back to top
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