NO13G00820.1, NO13G00820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00820.1
Unique NameNO13G00820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2656
Alignment locationchr13:270448..273712 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:270448..273712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G00820.1 vs.
Match: EWM29520.1 (hypothetical protein Naga_100006g93 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 0
Query:  323 GVDVEAFLRVLVAVTESDADGYVVTDASQTGGHSLWTFIVRLLGPPCLGLKPLTEANTWFALAKGMTRMKESGEEGERLLARLKGGKE---WKRECTVRPHPIRIPR 427
            GV  E ++R+  A+ +  ADG+VVTD + T G SLWTF +RLLG   LG + L E+ TW ++   +T++++  EEG   +   +   E   W+RE   RP  +R+PR
Sbjct:  139 GVHHEPWIRLFGAILQPAADGFVVTDHTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSIGIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPR 245          
The following BLAST results are available for this feature:
BLAST of NO13G00820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29520.11.600e-1039.25hypothetical protein Naga_100006g93 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00820NO13G00820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00820.1NO13G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00820.1.cds1NO13G00820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00820.1.cds2NO13G00820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00820.1.cds3NO13G00820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00820.1.cds4NO13G00820.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00820.1.cds5NO13G00820.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00820.1 ID=NO13G00820.1|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2656bp
ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT
GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC
AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG
AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC
CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGATGAGACGC
TGGTGCACGGCCACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCC
TCGTGCCTGGGAAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCT
GACCAGGGCGTTGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACG
CTCTGTTGGGGGCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTAC
TTTATGCGCTTGCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGG
GACCTTTATCGTGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCAT
TTCACCCTCAGTTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGC
CCAGCGAGGCGGAATCTGTGGAGAACGGCAGCGGCGGAGGAGGCCTTGGC
CAAGAAGGAGGAGACCCCGTTCCAGGCACTGGTCAAGGCCGTGGCGCAAG
TGAGGGGGGATAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAA
CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGC
AGAAAAGGGTGAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAA
AAGGAGGAGTAGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGAA
GAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGGAGGGAGGGA
GGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGAGGGTGTTGG
TTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACAGATGCGAGT
CAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATTGCTGGGGCC
GCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCTGGTTCGCCC
TCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAGGGAGAGAGA
TTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGAATGCACGGT
GCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCGAGGTGAAAG
TGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAAGGGAATGAC
TCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAAGGAGGGAGC
GATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCTCTTCTTCCT
CTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCCGCCGCCGCC
ACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTCCTCTTCGAC
CCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACATTCCTGACAG
GGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCTCTGTCCAAT
GCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTACAGAGACGC
TTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACATTGCCAATGT
CGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCTGGGCAGGAT
GGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGGAGGGAGGGG
AAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGGATTATGATG
GCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCGGAGGGACCA
GGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGCAATGGAAGA
AGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCAAGGTGTTTA
AGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAGGACATGTCT
GGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCCCTCCTCATC
TTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAATTCACCCTC
TGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAGGAGGTGGTG
TTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATATCGAGAGTTC
CATTATGGTGGAAATGTAGAGACGTATTGAGGAAGGAGTAGGAATTGAGA
AGGCTGATATGTAGACGAGGGAAGAAAAGGAAAGGAGAAGAAGAGAGAGG
ACGATGTAAAGAAGAGAAAGTGCAGGAGAAGCGGAATTTTGGATGGATCC
ACATGATAATGAAAATGAGTAAGAGTGAGTCTTCTTGAATAAGAATATGC
AATTGAGACCGGAGAATCGGAGCCATTTATATACATATACATACCGACAT
CAAAATACCAACACCACGACATCGCAAAGGATGGGGCATACACGAATGCG
CACCCAGCAAAAGCGACGAATACATCAGAAGAAGCAAAACCAAGCAGCCG
ATGTCA
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protein sequence of NO13G00820.1

>NO13G00820.1-protein ID=NO13G00820.1-protein|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp
MPEDTSRKTNALEEEELAIEINENNHGATPTAPQAAGSCSVASTNTTSPG
SAPGTGGVAAAPPTGTATTSGSKSSTTAFDDETLVHGHSLWRFLVRLFGS
SCLGRSEANESGTWRSLTRALSQWGDKKPERLDALLGATRWERECRTSEY
FMRLPRGDLGEPIAVKGTFIVGISLKNPLSDPSFHPQFQAALNAVAPGLS
PARRNLWRTAAAEEALAKKEETPFQALVKAVAQVRGDSGLLHPHYVPRQQ
QQQQQQQQLLLMKGDRAEKGEIQRGEDGEGGKGKGGVGEEAVAVDGRKGE
EAVATAAPGGGGEGGREGGRGTGVDVEAFLRVLVAVTESDADGYVVTDAS
QTGGHSLWTFIVRLLGPPCLGLKPLTEANTWFALAKGMTRMKESGEEGER
LLARLKGGKEWKRECTVRPHPIRIPRGGGGEVKVVEEGEGKGEEEGKGND
SGEGLEEEKEGNEKEGAMANSNAMEAERKSSSSSSSDSDEASSSSTAAAA
TITAAASPPTPAISSSTPFPSTGIRKVRGTFLTGITLRPPGPGLEAALSN
AIRELAPTFPPEQYRDAFEAYNTLWESHETLPMSQLVPLSSTHPMASGQD
GCSVGSGSGGGRGGGRGKYASGTSTSGGCADYDGRKVARGRKRKTQSEGP
GARVDERTGAEEAAMEEGGDGGGAGESGKGKVFKRDKATTSKAGKNEDMS
GNNAQHFASSASTPSSSSTYTPPLGMGASAIHPLIVRADGEGGAEGQEVV
LPPVLPLPSSVRHIESSIMVEM*
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mRNA from alignment at chr13:270448..273712+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00820.1 ID=NO13G00820.1|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3265bp|location=Sequence derived from alignment at chr13:270448..273712+ (Nannochloropsis oceanica)
ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGGTATTGACA ACAAGAATGACCAGGGAGCGACCACAATCAATTTCCCCACCACCCTTCCC CCCCTCCTCCCCCGCCCCTCGGCGTTGTTTCCACCGCCCTCCCTCACCGG CACTCCATGCGCTACTTGCTTTACCCACACTACAAGCCTCGGCCTCTGCG TCTCCCTGTTGATATTGATGCCTTACTTCTTGTGGTCGGTGCTCTCGTAG TGCCCAATCCGAAAGGGTTTATCGTCACAGATGAGACGCTGGTGCACGGC CACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCCTCGTGCCTGGG AAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCTGACCAGGGCGT TGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACGCTCTGTTGGGG GCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTACTTTATGCGCTT GCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGGGACCTTTATCG TGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCATTTCACCCTCAG TTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGCCCAGCGAGGTA CATGATGATTGTCGAGCAGTATCTGTCGACGGTGTGGATGAGTCATGAAG CCCTCGATATCGAGAGGGCGATTTGTGTGCACAATCGTCTGGCGGGGGGG CGGCAGGGGTGGGTGGGAAAAGGCGGAATCTGTGGAGAACGGCAGCGGCG GAGGAGGCCTTGGCCAAGAAGGAGGAGACCCCGTTCCAGGCACTGGTGAG TGGAAATAGGGAGGGAGAGAGGAAGGGCAGTTTCTTATTGATTAATGTTT AATTCATGTTCCTGTTGCCGTCAAGTGTCAGTCTAGCTGTTTACGCACTT TTCGAAAGTAGGAATGGGGGAAATCGGGGATGAAACTCACACAACTCATA AACGCACTAAACTGAATACAGGTCAAGGCCGTGGCGCAAGTGAGGGGGGA TAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAACAGCAGCAGC AGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGCAGAAAAGGGT GAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAAAAGGAGGAGT AGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGGTAAGGGTGAGA GGGACGGAAGGAGCGGCAAGGTGCCGACAAATGACACTCTCAATTCAAAA CCCGCAGAAGAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGG AGGGAGGGAGGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGA GGGTGTTGGTTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACA GATGCGAGTCAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATT GCTGGGGCCGCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCT GGTTCGCCCTCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAG GGAGAGAGATTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGA ATGCACGGTGCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCG AGGTGAAAGTGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAA GGGAATGACTCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAA GGAGGGAGCGATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCT CTTCTTCCTCTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCC GCCGCCGCCACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTC CTCTTCGACCCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACAT TCCTGACAGGGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCT CTGTCCAATGCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTA CAGAGACGCTTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACAT TGCCAATGTCGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCT GGGCAGGATGGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGG AGGGAGGGGAAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGG ATTATGATGGCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCG GAGGGACCAGGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGC AATGGAAGAAGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCA AGGTGTTTAAGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAG GACATGTCTGGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCC CTCCTCATCTTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAA TTCACCCTCTGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAG GAGGTGGTGTTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATAT CGAGAGTTCCATTATGGTGGAAATGTAGAGACGTATTGAGGAAGGAGTAG GAATTGAGAAGGCTGATATGTAGACGAGGGAAGAAAAGGAAAGGAGAAGA AGAGAGAGGACGATGTAAAGAAGAGAAAGTGCAGGAGAAGCGGAATTTTG GATGGATCCACATGATAATGAAAATGAGTAAGAGTGAGTCTTCTTGAATA AGAATATGCAATTGAGACCGGAGAATCGGAGCCATTTATATACATATACA TACCGACATCAAAATACCAACACCACGACATCGCAAAGGATGGGGCATAC ACGAATGCGCACCCAGCAAAAGCGACGAATACATCAGAAGAAGCAAAACC AAGCAGCCGATGTCA
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Coding sequence (CDS) from alignment at chr13:270448..273712+

>NO13G00820.1 ID=NO13G00820.1|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=2319bp|location=Sequence derived from alignment at chr13:270448..273712+ (Nannochloropsis oceanica)
ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT
GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC
AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG
AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC
CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGATGAGACGC
TGGTGCACGGCCACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCC
TCGTGCCTGGGAAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCT
GACCAGGGCGTTGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACG
CTCTGTTGGGGGCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTAC
TTTATGCGCTTGCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGG
GACCTTTATCGTGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCAT
TTCACCCTCAGTTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGC
CCAGCGAGGCGGAATCTGTGGAGAACGGCAGCGGCGGAGGAGGCCTTGGC
CAAGAAGGAGGAGACCCCGTTCCAGGCACTGGTCAAGGCCGTGGCGCAAG
TGAGGGGGGATAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAA
CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGC
AGAAAAGGGTGAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAA
AAGGAGGAGTAGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGAA
GAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGGAGGGAGGGA
GGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGAGGGTGTTGG
TTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACAGATGCGAGT
CAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATTGCTGGGGCC
GCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCTGGTTCGCCC
TCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAGGGAGAGAGA
TTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGAATGCACGGT
GCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCGAGGTGAAAG
TGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAAGGGAATGAC
TCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAAGGAGGGAGC
GATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCTCTTCTTCCT
CTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCCGCCGCCGCC
ACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTCCTCTTCGAC
CCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACATTCCTGACAG
GGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCTCTGTCCAAT
GCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTACAGAGACGC
TTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACATTGCCAATGT
CGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCTGGGCAGGAT
GGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGGAGGGAGGGG
AAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGGATTATGATG
GCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCGGAGGGACCA
GGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGCAATGGAAGA
AGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCAAGGTGTTTA
AGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAGGACATGTCT
GGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCCCTCCTCATC
TTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAATTCACCCTC
TGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAGGAGGTGGTG
TTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATATCGAGAGTTC
CATTATGGTGGAAATGTAG
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Synonyms
Publications