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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:270448..273712 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00820.1 vs.
Match: EWM29520.1 (hypothetical protein Naga_100006g93 [Nannochloropsis gaditana]) HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10 Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 0
Query: 323 GVDVEAFLRVLVAVTESDADGYVVTDASQTGGHSLWTFIVRLLGPPCLGLKPLTEANTWFALAKGMTRMKESGEEGERLLARLKGGKE---WKRECTVRPHPIRIPR 427
GV E ++R+ A+ + ADG+VVTD + T G SLWTF +RLLG LG + L E+ TW ++ +T++++ EEG + + E W+RE RP +R+PR
Sbjct: 139 GVHHEPWIRLFGAILQPAADGFVVTDHTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSIGIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPR 245
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00820.1 ID=NO13G00820.1|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2656bp ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGATGAGACGC TGGTGCACGGCCACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCC TCGTGCCTGGGAAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCT GACCAGGGCGTTGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACG CTCTGTTGGGGGCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTAC TTTATGCGCTTGCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGG GACCTTTATCGTGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCAT TTCACCCTCAGTTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGC CCAGCGAGGCGGAATCTGTGGAGAACGGCAGCGGCGGAGGAGGCCTTGGC CAAGAAGGAGGAGACCCCGTTCCAGGCACTGGTCAAGGCCGTGGCGCAAG TGAGGGGGGATAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAA CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGC AGAAAAGGGTGAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAA AAGGAGGAGTAGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGAA GAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGGAGGGAGGGA GGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGAGGGTGTTGG TTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACAGATGCGAGT CAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATTGCTGGGGCC GCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCTGGTTCGCCC TCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAGGGAGAGAGA TTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGAATGCACGGT GCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCGAGGTGAAAG TGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAAGGGAATGAC TCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAAGGAGGGAGC GATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCTCTTCTTCCT CTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCCGCCGCCGCC ACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTCCTCTTCGAC CCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACATTCCTGACAG GGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCTCTGTCCAAT GCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTACAGAGACGC TTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACATTGCCAATGT CGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCTGGGCAGGAT GGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGGAGGGAGGGG AAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGGATTATGATG GCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCGGAGGGACCA GGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGCAATGGAAGA AGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCAAGGTGTTTA AGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAGGACATGTCT GGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCCCTCCTCATC TTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAATTCACCCTC TGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAGGAGGTGGTG TTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATATCGAGAGTTC CATTATGGTGGAAATGTAGAGACGTATTGAGGAAGGAGTAGGAATTGAGA AGGCTGATATGTAGACGAGGGAAGAAAAGGAAAGGAGAAGAAGAGAGAGG ACGATGTAAAGAAGAGAAAGTGCAGGAGAAGCGGAATTTTGGATGGATCC ACATGATAATGAAAATGAGTAAGAGTGAGTCTTCTTGAATAAGAATATGC AATTGAGACCGGAGAATCGGAGCCATTTATATACATATACATACCGACAT CAAAATACCAACACCACGACATCGCAAAGGATGGGGCATACACGAATGCG CACCCAGCAAAAGCGACGAATACATCAGAAGAAGCAAAACCAAGCAGCCG ATGTCA back to topprotein sequence of NO13G00820.1 >NO13G00820.1-protein ID=NO13G00820.1-protein|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp MPEDTSRKTNALEEEELAIEINENNHGATPTAPQAAGSCSVASTNTTSPG SAPGTGGVAAAPPTGTATTSGSKSSTTAFDDETLVHGHSLWRFLVRLFGS SCLGRSEANESGTWRSLTRALSQWGDKKPERLDALLGATRWERECRTSEY FMRLPRGDLGEPIAVKGTFIVGISLKNPLSDPSFHPQFQAALNAVAPGLS PARRNLWRTAAAEEALAKKEETPFQALVKAVAQVRGDSGLLHPHYVPRQQ QQQQQQQQLLLMKGDRAEKGEIQRGEDGEGGKGKGGVGEEAVAVDGRKGE EAVATAAPGGGGEGGREGGRGTGVDVEAFLRVLVAVTESDADGYVVTDAS QTGGHSLWTFIVRLLGPPCLGLKPLTEANTWFALAKGMTRMKESGEEGER LLARLKGGKEWKRECTVRPHPIRIPRGGGGEVKVVEEGEGKGEEEGKGND SGEGLEEEKEGNEKEGAMANSNAMEAERKSSSSSSSDSDEASSSSTAAAA TITAAASPPTPAISSSTPFPSTGIRKVRGTFLTGITLRPPGPGLEAALSN AIRELAPTFPPEQYRDAFEAYNTLWESHETLPMSQLVPLSSTHPMASGQD GCSVGSGSGGGRGGGRGKYASGTSTSGGCADYDGRKVARGRKRKTQSEGP GARVDERTGAEEAAMEEGGDGGGAGESGKGKVFKRDKATTSKAGKNEDMS GNNAQHFASSASTPSSSSTYTPPLGMGASAIHPLIVRADGEGGAEGQEVV LPPVLPLPSSVRHIESSIMVEM* back to topmRNA from alignment at chr13:270448..273712+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00820.1 ID=NO13G00820.1|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3265bp|location=Sequence derived from alignment at chr13:270448..273712+ (Nannochloropsis oceanica) ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT
GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC
AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG
AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC
CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGGTATTGACA
ACAAGAATGACCAGGGAGCGACCACAATCAATTTCCCCACCACCCTTCCC
CCCCTCCTCCCCCGCCCCTCGGCGTTGTTTCCACCGCCCTCCCTCACCGG
CACTCCATGCGCTACTTGCTTTACCCACACTACAAGCCTCGGCCTCTGCG
TCTCCCTGTTGATATTGATGCCTTACTTCTTGTGGTCGGTGCTCTCGTAG
TGCCCAATCCGAAAGGGTTTATCGTCACAGATGAGACGCTGGTGCACGGC
CACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCCTCGTGCCTGGG
AAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCTGACCAGGGCGT
TGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACGCTCTGTTGGGG
GCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTACTTTATGCGCTT
GCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGGGACCTTTATCG
TGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCATTTCACCCTCAG
TTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGCCCAGCGAGGTA
CATGATGATTGTCGAGCAGTATCTGTCGACGGTGTGGATGAGTCATGAAG
CCCTCGATATCGAGAGGGCGATTTGTGTGCACAATCGTCTGGCGGGGGGG
CGGCAGGGGTGGGTGGGAAAAGGCGGAATCTGTGGAGAACGGCAGCGGCG
GAGGAGGCCTTGGCCAAGAAGGAGGAGACCCCGTTCCAGGCACTGGTGAG
TGGAAATAGGGAGGGAGAGAGGAAGGGCAGTTTCTTATTGATTAATGTTT
AATTCATGTTCCTGTTGCCGTCAAGTGTCAGTCTAGCTGTTTACGCACTT
TTCGAAAGTAGGAATGGGGGAAATCGGGGATGAAACTCACACAACTCATA
AACGCACTAAACTGAATACAGGTCAAGGCCGTGGCGCAAGTGAGGGGGGA
TAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAACAGCAGCAGC
AGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGCAGAAAAGGGT
GAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAAAAGGAGGAGT
AGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGGTAAGGGTGAGA
GGGACGGAAGGAGCGGCAAGGTGCCGACAAATGACACTCTCAATTCAAAA
CCCGCAGAAGAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGG
AGGGAGGGAGGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGA
GGGTGTTGGTTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACA
GATGCGAGTCAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATT
GCTGGGGCCGCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCT
GGTTCGCCCTCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAG
GGAGAGAGATTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGA
ATGCACGGTGCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCG
AGGTGAAAGTGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAA
GGGAATGACTCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAA
GGAGGGAGCGATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCT
CTTCTTCCTCTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCC
GCCGCCGCCACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTC
CTCTTCGACCCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACAT
TCCTGACAGGGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCT
CTGTCCAATGCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTA
CAGAGACGCTTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACAT
TGCCAATGTCGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCT
GGGCAGGATGGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGG
AGGGAGGGGAAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGG
ATTATGATGGCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCG
GAGGGACCAGGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGC
AATGGAAGAAGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCA
AGGTGTTTAAGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAG
GACATGTCTGGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCC
CTCCTCATCTTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAA
TTCACCCTCTGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAG
GAGGTGGTGTTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATAT
CGAGAGTTCCATTATGGTGGAAATGTAGAGACGTATTGAGGAAGGAGTAG
GAATTGAGAAGGCTGATATGTAGACGAGGGAAGAAAAGGAAAGGAGAAGA
AGAGAGAGGACGATGTAAAGAAGAGAAAGTGCAGGAGAAGCGGAATTTTG
GATGGATCCACATGATAATGAAAATGAGTAAGAGTGAGTCTTCTTGAATA
AGAATATGCAATTGAGACCGGAGAATCGGAGCCATTTATATACATATACA
TACCGACATCAAAATACCAACACCACGACATCGCAAAGGATGGGGCATAC
ACGAATGCGCACCCAGCAAAAGCGACGAATACATCAGAAGAAGCAAAACC
AAGCAGCCGATGTCA back to topCoding sequence (CDS) from alignment at chr13:270448..273712+ >NO13G00820.1 ID=NO13G00820.1|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=2319bp|location=Sequence derived from alignment at chr13:270448..273712+ (Nannochloropsis oceanica) ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGATGAGACGC TGGTGCACGGCCACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCC TCGTGCCTGGGAAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCT GACCAGGGCGTTGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACG CTCTGTTGGGGGCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTAC TTTATGCGCTTGCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGG GACCTTTATCGTGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCAT TTCACCCTCAGTTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGC CCAGCGAGGCGGAATCTGTGGAGAACGGCAGCGGCGGAGGAGGCCTTGGC CAAGAAGGAGGAGACCCCGTTCCAGGCACTGGTCAAGGCCGTGGCGCAAG TGAGGGGGGATAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAA CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGC AGAAAAGGGTGAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAA AAGGAGGAGTAGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGAA GAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGGAGGGAGGGA GGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGAGGGTGTTGG TTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACAGATGCGAGT CAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATTGCTGGGGCC GCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCTGGTTCGCCC TCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAGGGAGAGAGA TTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGAATGCACGGT GCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCGAGGTGAAAG TGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAAGGGAATGAC TCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAAGGAGGGAGC GATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCTCTTCTTCCT CTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCCGCCGCCGCC ACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTCCTCTTCGAC CCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACATTCCTGACAG GGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCTCTGTCCAAT GCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTACAGAGACGC TTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACATTGCCAATGT CGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCTGGGCAGGAT GGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGGAGGGAGGGG AAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGGATTATGATG GCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCGGAGGGACCA GGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGCAATGGAAGA AGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCAAGGTGTTTA AGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAGGACATGTCT GGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCCCTCCTCATC TTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAATTCACCCTC TGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAGGAGGTGGTG TTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATATCGAGAGTTC CATTATGGTGGAAATGTAG back to top
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