NO13G00740.1, NO13G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00740.1
Unique NameNO13G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr13:245535..247013 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:245535..247013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00740.1 vs.
Match: ANV80041.1 (hypothetical protein [uncultured Candidatus Thalassoarchaea euryarchaeote]; OUX46259.1 hypothetical protein CBE40_02945 [Euryarchaeota archaeon TMED280])

HSP 1 Score: 431.4 bits (1108), Expect = 3.100e-117
Identity = 215/401 (53.62%), Postives = 291/401 (72.57%), Query Frame = 0 
Query:    1 MPNKASNKKKTLIPVTVLTGFLGSGKTTLLNHIMTA-QHGKRIAVIENEFGEVGVDDSLVKRKDFGTEDIVEMNNGCICCTVRGDLIRILTDLFKRKAGKFDHILIETTGLADPAPVAQTFFVHDELQSKLRLDAILTVVDSKHLIQHLDDPRPEGVENEAVEQLAFADRVLLNKIDLATDAELMEVEKRIKAVNNFAPIIRTQNAVVNLDKVLDLKAFDLKRVLDFDPEFLG-DQEHEHDQSVTSVGFRLAGDMNLGQLERWLSVLLRDKGTELFRYKGVLSVKGFDAPWIFQGVHMLFGA--SMDDQEWKCVQDRTNRFVFIGRNLNRTELTEGFAACLVTKPLRFEVGTRVRCHVDENQWELGEVIKQWNDGNPYRVRLHN--GIEIWAPIDNDGAIR 396
            M N A +  K  IPVTVLTGFLGSGKTTLLNHI+T+ +H  + AVIENEFG++G+D++++       E ++E+ NGCICCTVRGDL  +L  ++ R    FD +LIETTGLADPAPVAQTFFV D++  + +LD I+TVVD+KH+IQH+D+ +PEGVENE+VEQLAFADR++LNKIDL ++ EL +VEK+IK++N FAPI RT+N++++  +++ + +FDLKR L+ DPEFL  D EHEHDQ VTS   +  G++N+ +LE+W+  LLR K  +LFRYKGVL+VKG D  ++FQGVHMLF    S D   WK  ++R  RFVFIGR+L+   L EG   C   + LRF VG  V  ++  + +  G+++K W+ GNPYRV + N     +W PIDND  +R
Sbjct:    1 MLNDAESTDKK-IPVTVLTGFLGSGKTTLLNHILTSTEHKMKFAVIENEFGDIGIDENILVESS--EESVIEVMNGCICCTVRGDLTEVLDRMYDR-IKDFDGVLIETTGLADPAPVAQTFFVDDKVVERYKLDGIITVVDAKHIIQHVDEEKPEGVENESVEQLAFADRIMLNKIDLVSEEELQDVEKKIKSINGFAPIFRTENSLIDPKELIGIGSFDLKRTLEMDPEFLDTDAEHEHDQRVTSTSSKFIGELNVNKLEKWVGNLLRTKAQDLFRYKGVLAVKGTDEKYVFQGVHMLFAGNFSKDIGLWKDDEERECRFVFIGRDLDHEALQEGLMEC-KAEELRFNVGDTVYANLGHSDFTEGKILKIWDQGNPYRVEIQNEEKSNVWVPIDNDDFVR 396
The following BLAST results are available for this feature:
BLAST of NO13G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ANV80041.13.100e-11753.62hypothetical protein [uncultured Candidatus Thalas... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00740NO13G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00740.1NO13G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00740.1.cds1NO13G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00740.1.cds2NO13G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00740.1.cds3NO13G00740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00740.1.cds4NO13G00740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00740.1 ID=NO13G00740.1|Name=NO13G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGCCTAACAAAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTACGGT
GCTCACGGGCTTCTTGGGGAGCGGTAAAACGACCCTGCTAAATCACATTA
TGACGGCGCAGCATGGGAAGCGTATCGCTGTCATTGAGAATGAGTTTGGG
GAGGTGGGCGTCGACGACTCCCTTGTGAAGCGCAAGGATTTCGGAACAGA
GGACATTGTGGAGATGAACAATGGCTGCATTTGCTGCACTGTCCGCGGGG
ACCTGATCCGCATCCTCACGGACCTCTTCAAGCGCAAAGCCGGAAAGTTT
GACCATATCCTCATCGAGACGACGGGGTTGGCCGACCCAGCTCCGGTCGC
CCAAACATTCTTTGTGCATGATGAGCTTCAGTCCAAATTGCGCCTGGATG
CTATTCTCACGGTGGTGGACTCCAAGCATCTTATCCAGCACCTCGATGAC
CCTCGTCCGGAAGGCGTGGAAAACGAGGCAGTGGAGCAGCTCGCCTTTGC
TGATCGAGTCCTCCTCAATAAGATTGATCTCGCCACAGACGCCGAGCTGA
TGGAGGTCGAAAAGCGCATCAAAGCTGTCAACAACTTTGCGCCTATCATA
CGCACCCAAAATGCTGTGGTCAACCTAGACAAAGTCCTGGACCTCAAAGC
ATTTGACCTGAAGCGGGTCTTAGACTTCGACCCGGAGTTCCTCGGGGATC
AGGAGCATGAACATGACCAGAGCGTCACCTCGGTAGGCTTCAGACTGGCC
GGAGACATGAATTTGGGACAACTTGAACGTTGGCTGTCCGTCCTCCTCCG
CGATAAGGGCACGGAACTCTTCCGCTACAAGGGCGTTCTGTCCGTTAAGG
GCTTCGATGCGCCCTGGATTTTCCAAGGGGTCCATATGCTCTTTGGTGCC
TCCATGGACGATCAAGAGTGGAAGTGCGTCCAGGATCGGACGAACCGTTT
TGTCTTCATTGGCCGCAACCTGAACCGCACCGAGCTCACCGAGGGTTTTG
CGGCATGTCTTGTCACCAAGCCCCTGCGCTTTGAGGTTGGGACTCGGGTC
CGCTGCCACGTGGATGAGAATCAATGGGAGCTGGGCGAGGTGATCAAGCA
GTGGAACGACGGTAACCCCTACCGGGTCCGACTCCACAACGGGATAGAGA
TCTGGGCTCCTATTGATAACGATGGAGCCATCCGCCTCGCGTGTCGTGCG
GAGACTCGCATGAATAAGTGA
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protein sequence of NO13G00740.1

>NO13G00740.1-protein ID=NO13G00740.1-protein|Name=NO13G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MPNKASNKKKTLIPVTVLTGFLGSGKTTLLNHIMTAQHGKRIAVIENEFG
EVGVDDSLVKRKDFGTEDIVEMNNGCICCTVRGDLIRILTDLFKRKAGKF
DHILIETTGLADPAPVAQTFFVHDELQSKLRLDAILTVVDSKHLIQHLDD
PRPEGVENEAVEQLAFADRVLLNKIDLATDAELMEVEKRIKAVNNFAPII
RTQNAVVNLDKVLDLKAFDLKRVLDFDPEFLGDQEHEHDQSVTSVGFRLA
GDMNLGQLERWLSVLLRDKGTELFRYKGVLSVKGFDAPWIFQGVHMLFGA
SMDDQEWKCVQDRTNRFVFIGRNLNRTELTEGFAACLVTKPLRFEVGTRV
RCHVDENQWELGEVIKQWNDGNPYRVRLHNGIEIWAPIDNDGAIRLACRA
ETRMNK*
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mRNA from alignment at chr13:245535..247013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00740.1 ID=NO13G00740.1|Name=NO13G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp|location=Sequence derived from alignment at chr13:245535..247013+ (Nannochloropsis oceanica)
ATGCCTAACAAAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTACGGT
GCTCACGGGCTTCTTGGGGAGCGGTAAAACGGTAGGTGTCAGTATATACG
CCGACTGGCAACTTGCCTTTCTCTGTACTTATGATGAATATCATACGCAT
GATCAATAGACCCTGCTAAATCACATTATGACGGCGCAGCATGGGAAGCG
TATCGCTGTCATTGAGAATGAGTTTGGGGAGGTGGGCGTCGACGACTCCC
TTGTGAAGCGCAAGGATTTCGGAACAGAGGACATTGTGGAGATGAACAAT
GGCTGTAAGTTATTACGTCAATTCATCCCCAAAAAAGCCACTCGTTCACT
TTACCTGTCTCACCAAACCCCACCAGGCATTTGCTGCACTGTCCGCGGGG
ACCTGATCCGCATCCTCACGGACCTCTTCAAGCGCAAAGCCGGAAAGTTT
GACCATATCCTCATCGAGACGACGGGGTTGGCCGACCCAGCTCCGGTCGC
CCAAACATTCTTTGTGCATGATGAGCTTCAGGTATGTAGGCTAGTCGGCT
TTTCCGAGTCCGGCATTCCTGTCTGCATCCGCCCATAGCACGCACAAAAT
CGTTTCCCCCCCTCCGTTCCCCCGTAATGTGTTACACAGTCCAAATTGCG
CCTGGATGCTATTCTCACGGTGGTGGACTCCAAGCATCTTATCCAGCACC
TCGATGACCCTCGTCCGGAAGGCGTGGAAAACGAGGCAGTGGAGCAGCTC
GCCTTTGCTGATCGAGTCCTCCTCAATAAGATTGATCTCGCCACAGACGC
CGAGCTGATGGAGGTCGAAAAGCGCATCAAAGCTGTCAACAACTTTGCGC
CTATCATACGCACCCAAAATGCTGTGGTCAACCTAGACAAAGTCCTGGAC
CTCAAAGCATTTGACCTGAAGCGGGTCTTAGACTTCGACCCGGAGTTCCT
CGGGGATCAGGAGCATGAACATGACCAGAGCGTCACCTCGGTAGGCTTCA
GACTGGCCGGAGACATGAATTTGGGACAACTTGAACGTTGGCTGTCCGTC
CTCCTCCGCGATAAGGGCACGGAACTCTTCCGCTACAAGGGCGTTCTGTC
CGTTAAGGGCTTCGATGCGCCCTGGATTTTCCAAGGGGTCCATATGCTCT
TTGGTGCCTCCATGGACGATCAAGAGTGGAAGTGCGTCCAGGATCGGACG
AACCGTTTTGTCTTCATTGGCCGCAACCTGAACCGCACCGAGCTCACCGA
GGGTTTTGCGGCATGTCTTGTCACCAAGCCCCTGCGCTTTGAGGTTGGGA
CTCGGGTCCGCTGCCACGTGGATGAGAATCAATGGGAGCTGGGCGAGGTG
ATCAAGCAGTGGAACGACGGTAACCCCTACCGGGTCCGACTCCACAACGG
GATAGAGATCTGGGCTCCTATTGATAACGATGGAGCCATCCGCCTCGCGT
GTCGTGCGGAGACTCGCATGAATAAGTGA
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Coding sequence (CDS) from alignment at chr13:245535..247013+

>NO13G00740.1 ID=NO13G00740.1|Name=NO13G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr13:245535..247013+ (Nannochloropsis oceanica)
ATGCCTAACAAAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTACGGT
GCTCACGGGCTTCTTGGGGAGCGGTAAAACGACCCTGCTAAATCACATTA
TGACGGCGCAGCATGGGAAGCGTATCGCTGTCATTGAGAATGAGTTTGGG
GAGGTGGGCGTCGACGACTCCCTTGTGAAGCGCAAGGATTTCGGAACAGA
GGACATTGTGGAGATGAACAATGGCTGCATTTGCTGCACTGTCCGCGGGG
ACCTGATCCGCATCCTCACGGACCTCTTCAAGCGCAAAGCCGGAAAGTTT
GACCATATCCTCATCGAGACGACGGGGTTGGCCGACCCAGCTCCGGTCGC
CCAAACATTCTTTGTGCATGATGAGCTTCAGTCCAAATTGCGCCTGGATG
CTATTCTCACGGTGGTGGACTCCAAGCATCTTATCCAGCACCTCGATGAC
CCTCGTCCGGAAGGCGTGGAAAACGAGGCAGTGGAGCAGCTCGCCTTTGC
TGATCGAGTCCTCCTCAATAAGATTGATCTCGCCACAGACGCCGAGCTGA
TGGAGGTCGAAAAGCGCATCAAAGCTGTCAACAACTTTGCGCCTATCATA
CGCACCCAAAATGCTGTGGTCAACCTAGACAAAGTCCTGGACCTCAAAGC
ATTTGACCTGAAGCGGGTCTTAGACTTCGACCCGGAGTTCCTCGGGGATC
AGGAGCATGAACATGACCAGAGCGTCACCTCGGTAGGCTTCAGACTGGCC
GGAGACATGAATTTGGGACAACTTGAACGTTGGCTGTCCGTCCTCCTCCG
CGATAAGGGCACGGAACTCTTCCGCTACAAGGGCGTTCTGTCCGTTAAGG
GCTTCGATGCGCCCTGGATTTTCCAAGGGGTCCATATGCTCTTTGGTGCC
TCCATGGACGATCAAGAGTGGAAGTGCGTCCAGGATCGGACGAACCGTTT
TGTCTTCATTGGCCGCAACCTGAACCGCACCGAGCTCACCGAGGGTTTTG
CGGCATGTCTTGTCACCAAGCCCCTGCGCTTTGAGGTTGGGACTCGGGTC
CGCTGCCACGTGGATGAGAATCAATGGGAGCTGGGCGAGGTGATCAAGCA
GTGGAACGACGGTAACCCCTACCGGGTCCGACTCCACAACGGGATAGAGA
TCTGGGCTCCTATTGATAACGATGGAGCCATCCGCCTCGCGTGTCGTGCG
GAGACTCGCATGAATAAGTGA
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Synonyms
Publications