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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:240477..243252 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00720.1 vs.
Match: EWM21737.1 (hypothetical protein Naga_100270g4 [Nannochloropsis gaditana]) HSP 1 Score: 700.3 bits (1806), Expect = 6.300e-198 Identity = 388/586 (66.21%), Postives = 440/586 (75.09%), Query Frame = 0
Query: 103 ASTSFSTPIDAG--VRDIEAGTAPTAPPAVQAAQDQIREEEEEAT-RPLTIVAGSAQKTEEGGKEDSEDKEKDKDRDKVVPPVLGFAGGIDRAALLGDHDDEQGSLLEEDGPDE---DPIVHATRDLCLGLLRKAFYVVMPLSIIASVFACLYGWIFVNTAHYLADPDSWQRCIVYNTGNAGATPQNFAVSASAFGGMMFIFMGLGFKAGYLALQDIELLPYSLTVTCYTLLGQMVYRPVNPVVPAITELTPTLVSLASFIHPKMYTNVPNPNNNNACQHAYRVNACFLAFCCILFAANIFNLFLQIYALVRTWRVPRQERYVLVWYRPALVLVLLAIGGYILTVGAKEDAALKTLFLLEEVGHGYLFPFERPALDTVGLFLLLTVASVIYGACKQEPGSFKWAAFTAYVNVLLSYPILISNFQAYHLYGFWTYEGCKHFLETDTSHAGGANRQLLFLVAGNKYPETEKAFCRDTRVALLGQFAQFVIMHLAIGACLLVVLANWRIEKPSMQLHLFGSKASSFLFPDAPPGQEDGEGGRGRGSSQHRGEGG-GRRRVSSVA---SNNCTVLQEPLLSPSGAGGGTG 679
A+T + P + V DIE G A P A QDQIREEEEE + RP T+V S + D+ D++K P+ G+ A G L++D +E DP++ ATR CLGLLRK FYVVMPLSI+AS++ACLYGWIFVNT YL DP SWQRCIVYNT NA ATPQNFAVSASAFGGMMFIFMGLGFKAGYL LQD++LLPYSLTVTCYTLLGQ+VYRPVNPVVPAITELTPTL+SLASF+ P MY +VP+ ACQHA RVN FLAF +LFAAN NL L +YA RT RVPR RY+LVW+RPAL LV LAI YI+T+ AKEDAALKTLFLL++VGHGYLFPF+RP LDTVGLFLLLTVASV+YGACKQEP SFKWA+FTAYV+VLLSYPILISNFQAYHLYGFWT GC HFLETDT+HAGGANRQLLFLVA NKYPETE+ FCRDTRVAL+GQ AQF+IMHLAIGACLLVV+ANWR+E+PSMQ LFGS+ASSFLFPD PP + DGEGG G+GG RV S+ L+EPLL+ SG G +G
Sbjct: 3 AATPYPAPRSSSEAVPDIETGIAAPLPLPTNAPQDQIREEEEELSGRPPTMVPASTK--------DNPDEDKVPVGAGNESPMPRCGEGVASTAFRASGPRTSGVHLQKDNEEEEEEDPLIVATRTQCLGLLRKLFYVVMPLSIVASIYACLYGWIFVNTPTYLQDPTSWQRCIVYNTNNANATPQNFAVSASAFGGMMFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMYADVPDAAG--ACQHARRVNVSFLAFVLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGLAIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAYHLYGFWTDAGCTHFLETDTTHAGGANRQLLFLVAKNKYPETERGFCRDTRVALVGQCAQFIIMHLAIGACLLVVVANWRMERPSMQ--LFGSQASSFLFPD-PPAKADGEGGTSGEIPAGGGQGGEAGDRVMSLTPGMERQGNALEEPLLA-SGMGAESG 574
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00720.1 ID=NO13G00720.1|Name=NO13G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp
CGCTGCATTGCAAGAATCGCCAAAGACTACGAGGCGAATACTCTTCCCTT
CCTCACACCCTTGATTTTCCTCGTGCGTGCGTGTTCATGGATAAGCCACC
ACAGTGTGGTGCTGCGCTTAATGGTGATGCTTCTCTGTGCCGTCAGTGTG
TATGTTGCGGGGCATGAGGTCCCACGAACGCGACCTTGTTCTTTTTTTAG
CCTCCTCCCTTCCTTCATCGTTCTGACCCTACCCTGGCTTGGACGATGTC
TAACCCTTTCCACACATACACTGAACAGGCACAGTCCCGGGTTCACATCA
TCACGTTTCGCTGGGAAAGGAGAACCAAGCCCGTCCGTCATTCTGCACAC
TTATCAAGGCACCCCGTCCATTTTTCAACTCCTAGCATCACGTCGTGCGA
GCAACATGACCACCCCAATCAGCTCTGCGTCTACGAGTTTTTCCACCCCT
ATCGATGCTGGGGTCCGAGATATCGAGGCTGGAACGGCACCAACCGCGCC
ACCTGCAGTGCAAGCCGCGCAAGACCAGATCCGTGAAGAAGAAGAGGAAG
CCACTAGGCCCCTCACTATCGTCGCGGGCAGCGCCCAGAAGACCGAAGAA
GGAGGCAAGGAGGACTCTGAGGACAAAGAGAAAGACAAGGACAGGGACAA
AGTCGTCCCTCCCGTTCTCGGCTTCGCCGGGGGCATCGACCGTGCTGCTT
TGCTAGGAGACCATGACGACGAGCAAGGCAGCTTATTGGAGGAGGACGGC
CCGGACGAGGACCCGATAGTGCACGCTACACGCGACCTGTGCCTCGGCCT
GCTCCGCAAAGCCTTTTATGTCGTCATGCCTCTCTCCATCATTGCCTCCG
TTTTCGCTTGTCTCTATGGGTGGATCTTCGTGAACACCGCCCACTATCTC
GCTGATCCTGACAGCTGGCAACGCTGCATTGTCTACAACACGGGAAATGC
CGGAGCGACGCCCCAGAATTTTGCCGTGAGCGCCTCGGCCTTTGGAGGGA
TGATGTTCATTTTTATGGGGTTAGGGTTCAAGGCCGGTTATCTTGCTTTG
CAGGACATTGAGTTGCTTCCGTACTCCTTGACGGTGACGTGCTACACTCT
GTTGGGGCAGATGGTGTATCGGCCGGTGAACCCCGTGGTGCCGGCCATCA
CTGAACTGACCCCCACCCTTGTCTCGCTCGCCTCCTTCATCCACCCGAAG
ATGTACACGAATGTGCCCAATCCCAATAATAATAATGCCTGCCAACACGC
CTACCGAGTGAACGCCTGCTTTCTGGCATTTTGCTGTATCCTCTTCGCCG
CCAATATCTTCAATCTTTTCCTGCAGATCTACGCGCTTGTCCGCACGTGG
CGTGTGCCGCGACAGGAACGTTACGTCTTGGTCTGGTACCGACCTGCACT
TGTACTGGTGTTGTTGGCAATTGGTGGGTATATCCTGACTGTGGGTGCCA
AGGAAGATGCGGCGTTGAAGACATTATTCTTGCTCGAGGAGGTGGGGCAT
GGGTACTTGTTCCCATTTGAACGCCCCGCGCTTGACACGGTGGGGCTGTT
CCTACTGCTGACCGTGGCGAGTGTTATCTATGGGGCGTGTAAACAGGAAC
CGGGGAGTTTCAAGTGGGCGGCGTTCACGGCCTACGTCAACGTGTTGCTC
TCTTACCCAATATTAATCAGCAATTTCCAAGCATACCACCTCTATGGCTT
CTGGACCTACGAGGGGTGCAAGCATTTCCTGGAGACCGACACGAGTCACG
CAGGTGGGGCCAACCGGCAGCTCCTTTTCCTGGTGGCTGGGAATAAGTAT
CCGGAGACAGAGAAGGCTTTCTGTAGGGATACGAGGGTGGCATTACTAGG
GCAATTTGCCCAGTTTGTGATTATGCACCTGGCGATTGGGGCGTGTTTGC
TGGTGGTGTTGGCTAATTGGAGGATTGAAAAGCCCTCGATGCAATTACAT
TTGTTTGGGTCCAAGGCGTCGTCGTTTTTGTTTCCCGATGCTCCGCCGGG
GCAGGAGGATGGGGAGGGAGGGAGAGGGAGGGGGAGTAGTCAGCACAGGG
GGGAGGGGGGAGGGAGGAGGCGGGTGTCGTCTGTGGCGTCGAACAACTGT
ACGGTGCTGCAAGAGCCTTTACTGTCACCTTCTGGAGCAGGAGGAGGGAC
GGGATTACGGCCGCCGCTGCACCATCGACGACAGAGTAGTGGATCGGTGA
CTTCTCACAGGGGGGGAGGGCATGGGCGGGGGAGGAGCTCCATGAATGAC
CACTTGTTGGGGCCGGTGTTGGATTAGATGGGAAGAATTAGAAGGGAGAG
GAAAGGAAGGTTCCATTACATGTTTAAATACTCTGCGTGGATAGAGAGAG
GGAGGTGGAAAAGCTTGCATGAAAAGAAGCTAGAAAACTGCATGCATGTG
TCACGGAGAAGGGGGAAATGTGCGTCTAGAGCACGCAATGAAATGACTGG
AGGAAAAACAGGGGCCCAGAGACTGGGCGAGAAAAGAGAAGAGATTGAAC
AAATAAAGAATAAGGAGAAAGTACGCGGCAAATGGTACAATATAATATCT
TGCTTTTAGTTTTGCATGTCGGGCCGCGACGAAAAG back to topprotein sequence of NO13G00720.1 >NO13G00720.1-protein ID=NO13G00720.1-protein|Name=NO13G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MVMLLCAVSVYVAGHEVPRTRPCSFFSLLPSFIVLTLPWLGRCLTLSTHT
LNRHSPGFTSSRFAGKGEPSPSVILHTYQGTPSIFQLLASRRASNMTTPI
SSASTSFSTPIDAGVRDIEAGTAPTAPPAVQAAQDQIREEEEEATRPLTI
VAGSAQKTEEGGKEDSEDKEKDKDRDKVVPPVLGFAGGIDRAALLGDHDD
EQGSLLEEDGPDEDPIVHATRDLCLGLLRKAFYVVMPLSIIASVFACLYG
WIFVNTAHYLADPDSWQRCIVYNTGNAGATPQNFAVSASAFGGMMFIFMG
LGFKAGYLALQDIELLPYSLTVTCYTLLGQMVYRPVNPVVPAITELTPTL
VSLASFIHPKMYTNVPNPNNNNACQHAYRVNACFLAFCCILFAANIFNLF
LQIYALVRTWRVPRQERYVLVWYRPALVLVLLAIGGYILTVGAKEDAALK
TLFLLEEVGHGYLFPFERPALDTVGLFLLLTVASVIYGACKQEPGSFKWA
AFTAYVNVLLSYPILISNFQAYHLYGFWTYEGCKHFLETDTSHAGGANRQ
LLFLVAGNKYPETEKAFCRDTRVALLGQFAQFVIMHLAIGACLLVVLANW
RIEKPSMQLHLFGSKASSFLFPDAPPGQEDGEGGRGRGSSQHRGEGGGRR
RVSSVASNNCTVLQEPLLSPSGAGGGTGLRPPLHHRRQSSGSVTSHRGGG
HGRGRSSMNDHLLGPVLD* back to topmRNA from alignment at chr13:240477..243252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00720.1 ID=NO13G00720.1|Name=NO13G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2776bp|location=Sequence derived from alignment at chr13:240477..243252- (Nannochloropsis oceanica)
CGCTGCATTGCAAGAATCGCCAAAGACTACGAGGCGAATACTCTTCCCTT
CCTCACACCCTTGATTTTCCTCGTGCGTGCGTGTTCATGGATAAGCCACC
ACAGTGTGGTGCTGCGCTTAATGGTGATGCTTCTCTGTGCCGTCAGTGTG
TATGTTGCGGGGCATGAGGTCCCACGAACGCGACCTTGTTCTTTTTTTAG
CCTCCTCCCTTCCTTCATCGTTCTGACCCTACCCTGGCTTGGACGATGTC
TAACCCTTTCCACACATACACTGAACAGGCACAGTCCCGGGTTCACATCA
TCACGTTTCGCTGGGAAAGGAGAACCAAGCCCGTCCGTCATTCTGCACAC
TTATCAAGGCACCCCGTCCATTTTTCAACTCCTAGCATCACGTCGTGCGA
GCAACATGACCACCCCAATCAGCTCTGCGTCTACGAGTTTTTCCACCCCT
ATCGATGCTGGGGTCCGAGATATCGAGGCTGGAACGGCACCAACCGCGCC
ACCTGCAGTGCAAGCCGCGCAAGACCAGATCCGTGAAGAAGAAGAGGAAG
CCACTAGGCCCCTCACTATCGTCGCGGGCAGCGCCCAGAAGACCGAAGAA
GGAGGCAAGGAGGACTCTGAGGACAAAGAGAAAGACAAGGACAGGGACAA
AGTCGTCCCTCCCGTTCTCGGCTTCGCCGGGGGCATCGACCGTGCTGCTT
TGCTAGGAGACCATGACGACGAGCAAGGCAGCTTATTGGAGGAGGACGGC
CCGGACGAGGACCCGATAGTGCACGCTACACGCGACCTGTGCCTCGGCCT
GCTCCGCAAAGCCTTTTATGTCGTCATGCCTCTCTCCATCATTGCCTCCG
TTTTCGCTTGTCTCTATGGGTGGATCTTCGTGAACACCGCCCACTATCTC
GCTGATCCTGACAGCTGGCAACGCTGCATTGTCTACAACACGGGAAATGC
CGGAGCGACGCCCCAGAATTTTGCCGTGAGCGCCTCGGCCTTTGGAGGGA
TGATGTTCATTTTTATGGGGTTAGGGTTCAAGGCCGGTTATCTTGCTTTG
CAGGACATTGAGTTGCTTCCGTACTCCTTGACGGTGACGTGCTACACTCT
GTTGGGGCAGATGGTGTATCGGCCGGTGAACCCCGTGGTGCCGGCCATCA
CTGAACTGACCCCCACCCTTGTCTCGCTCGCCTCCTTCATCCACCCGAAG
ATGTACACGAATGTGCCCAATCCCAATAATAATAATGCCTGCCAACACGC
CTACCGAGTGAACGCCTGCTTTCTGGCATTTTGCTGTATCCTCTTCGCCG
CCAATATCTTCAATCTTTTCCTGCAGATCTACGCGCTTGTCCGCACGTGG
CGTGTGCCGCGACAGGAACGTTACGTCTTGGTCTGGTACCGACCTGCACT
TGTACTGGTGTTGTTGGCAATTGGTGGGTATATCCTGACTGTGGGTGCCA
AGGAAGATGCGGCGTTGAAGACATTATTCTTGCTCGAGGAGGTGGGGCAT
GGGTACTTGTTCCCATTTGAACGCCCCGCGCTTGACACGGTGGGGCTGTT
CCTACTGCTGACCGTGGCGAGTGTTATCTATGGGGCGTGTAAACAGGAAC
CGGGGAGTTTCAAGTGGGCGGCGTTCACGGCCTACGTCAACGTGTTGCTC
TCTTACCCAATATTAATCAGGTAGGTTTAAAGGGAAGGGAGGGAGGGAGG
GAGGGAGGGAGGGACATATTGGCCTCTGGCAGCACATACCCTACGACGGC
CGGACTTCCGAGTCACAGATCATTAAAGAGCAACGCAAGTACTGACTCTC
CTTTGCTTCCTCTCTCCCCTTCCTCCTCCCCTCTTTCCCTTCGATTCCTC
GATTCTGTAGCAATTTCCAAGCATACCACCTCTATGGCTTCTGGACCTAC
GAGGGGTGCAAGCATTTCCTGGAGACCGACACGAGTCACGCAGGTGGGGC
CAACCGGCAGCTCCTTTTCCTGGTGGCTGGGAATAAGTATCCGGAGACAG
AGAAGGCTTTCTGTAGGGATACGAGGGTGGCATTACTAGGGCAATTTGCC
CAGTTTGTGATTATGCACCTGGCGATTGGGGCGTGTTTGCTGGTGGTGTT
GGCTAATTGGAGGATTGAAAAGCCCTCGATGCAATTACATTTGTTTGGGT
CCAAGGCGTCGTCGTTTTTGTTTCCCGATGCTCCGCCGGGGCAGGAGGAT
GGGGAGGGAGGGAGAGGGAGGGGGAGTAGTCAGCACAGGGGGGAGGGGGG
AGGGAGGAGGCGGGTGTCGTCTGTGGCGTCGAACAACTGTACGGTGCTGC
AAGAGCCTTTACTGTCACCTTCTGGAGCAGGAGGAGGGACGGGATTACGG
CCGCCGCTGCACCATCGACGACAGAGTAGTGGATCGGTGACTTCTCACAG
GGGGGGAGGGCATGGGCGGGGGAGGAGCTCCATGAATGACCACTTGTTGG
GGCCGGTGTTGGATTAGATGGGAAGAATTAGAAGGGAGAGGAAAGGAAGG
TTCCATTACATGTTTAAATACTCTGCGTGGATAGAGAGAGGGAGGTGGAA
AAGCTTGCATGAAAAGAAGCTAGAAAACTGCATGCATGTGTCACGGAGAA
GGGGGAAATGTGCGTCTAGAGCACGCAATGAAATGACTGGAGGAAAAACA
GGGGCCCAGAGACTGGGCGAGAAAAGAGAAGAGATTGAACAAATAAAGAA
TAAGGAGAAAGTACGCGGCAAATGGTACAATATAATATCTTGCTTTTAGT
TTTGCATGTCGGGCCGCGACGAAAAG back to topCoding sequence (CDS) from alignment at chr13:240477..243252- >NO13G00720.1 ID=NO13G00720.1|Name=NO13G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at chr13:240477..243252- (Nannochloropsis oceanica)
ATGGTGATGCTTCTCTGTGCCGTCAGTGTGTATGTTGCGGGGCATGAGGT
CCCACGAACGCGACCTTGTTCTTTTTTTAGCCTCCTCCCTTCCTTCATCG
TTCTGACCCTACCCTGGCTTGGACGATGTCTAACCCTTTCCACACATACA
CTGAACAGGCACAGTCCCGGGTTCACATCATCACGTTTCGCTGGGAAAGG
AGAACCAAGCCCGTCCGTCATTCTGCACACTTATCAAGGCACCCCGTCCA
TTTTTCAACTCCTAGCATCACGTCGTGCGAGCAACATGACCACCCCAATC
AGCTCTGCGTCTACGAGTTTTTCCACCCCTATCGATGCTGGGGTCCGAGA
TATCGAGGCTGGAACGGCACCAACCGCGCCACCTGCAGTGCAAGCCGCGC
AAGACCAGATCCGTGAAGAAGAAGAGGAAGCCACTAGGCCCCTCACTATC
GTCGCGGGCAGCGCCCAGAAGACCGAAGAAGGAGGCAAGGAGGACTCTGA
GGACAAAGAGAAAGACAAGGACAGGGACAAAGTCGTCCCTCCCGTTCTCG
GCTTCGCCGGGGGCATCGACCGTGCTGCTTTGCTAGGAGACCATGACGAC
GAGCAAGGCAGCTTATTGGAGGAGGACGGCCCGGACGAGGACCCGATAGT
GCACGCTACACGCGACCTGTGCCTCGGCCTGCTCCGCAAAGCCTTTTATG
TCGTCATGCCTCTCTCCATCATTGCCTCCGTTTTCGCTTGTCTCTATGGG
TGGATCTTCGTGAACACCGCCCACTATCTCGCTGATCCTGACAGCTGGCA
ACGCTGCATTGTCTACAACACGGGAAATGCCGGAGCGACGCCCCAGAATT
TTGCCGTGAGCGCCTCGGCCTTTGGAGGGATGATGTTCATTTTTATGGGG
TTAGGGTTCAAGGCCGGTTATCTTGCTTTGCAGGACATTGAGTTGCTTCC
GTACTCCTTGACGGTGACGTGCTACACTCTGTTGGGGCAGATGGTGTATC
GGCCGGTGAACCCCGTGGTGCCGGCCATCACTGAACTGACCCCCACCCTT
GTCTCGCTCGCCTCCTTCATCCACCCGAAGATGTACACGAATGTGCCCAA
TCCCAATAATAATAATGCCTGCCAACACGCCTACCGAGTGAACGCCTGCT
TTCTGGCATTTTGCTGTATCCTCTTCGCCGCCAATATCTTCAATCTTTTC
CTGCAGATCTACGCGCTTGTCCGCACGTGGCGTGTGCCGCGACAGGAACG
TTACGTCTTGGTCTGGTACCGACCTGCACTTGTACTGGTGTTGTTGGCAA
TTGGTGGGTATATCCTGACTGTGGGTGCCAAGGAAGATGCGGCGTTGAAG
ACATTATTCTTGCTCGAGGAGGTGGGGCATGGGTACTTGTTCCCATTTGA
ACGCCCCGCGCTTGACACGGTGGGGCTGTTCCTACTGCTGACCGTGGCGA
GTGTTATCTATGGGGCGTGTAAACAGGAACCGGGGAGTTTCAAGTGGGCG
GCGTTCACGGCCTACGTCAACGTGTTGCTCTCTTACCCAATATTAATCAG
CAATTTCCAAGCATACCACCTCTATGGCTTCTGGACCTACGAGGGGTGCA
AGCATTTCCTGGAGACCGACACGAGTCACGCAGGTGGGGCCAACCGGCAG
CTCCTTTTCCTGGTGGCTGGGAATAAGTATCCGGAGACAGAGAAGGCTTT
CTGTAGGGATACGAGGGTGGCATTACTAGGGCAATTTGCCCAGTTTGTGA
TTATGCACCTGGCGATTGGGGCGTGTTTGCTGGTGGTGTTGGCTAATTGG
AGGATTGAAAAGCCCTCGATGCAATTACATTTGTTTGGGTCCAAGGCGTC
GTCGTTTTTGTTTCCCGATGCTCCGCCGGGGCAGGAGGATGGGGAGGGAG
GGAGAGGGAGGGGGAGTAGTCAGCACAGGGGGGAGGGGGGAGGGAGGAGG
CGGGTGTCGTCTGTGGCGTCGAACAACTGTACGGTGCTGCAAGAGCCTTT
ACTGTCACCTTCTGGAGCAGGAGGAGGGACGGGATTACGGCCGCCGCTGC
ACCATCGACGACAGAGTAGTGGATCGGTGACTTCTCACAGGGGGGGAGGG
CATGGGCGGGGGAGGAGCTCCATGAATGACCACTTGTTGGGGCCGGTGTT
GGATTAG back to top
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