NO13G00700.1, NO13G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00700.1
Unique NameNO13G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr13:236470..237823 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:236470..237823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00700.1 vs.
Match: XP_005855158.1 (ubiquitin-like modifier-activating enzyme 5 [Nannochloropsis gaditana CCMP526]; EKU21199.1 ubiquitin-like modifier-activating enzyme 5 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 493.0 bits (1268), Expect = 8.300e-136
Identity = 256/385 (66.49%), Postives = 293/385 (76.10%), Query Frame = 0 
Query:    4 PSLSRPSPILPP-RTKIEAMSAEVVDSNPYSRLMALKRMGVVKEYERIRDLSILIVGLGGIGSVAAEMLTRCGIGKLLLFDYDTVELANMNRLFFRPEQAGQTKSAAAKETLEKINPDVFIEEHRYNITETAHFDHFLDRLANGSLTNNSSVDLVLSCVDNYAARTTINQACNELNIVWMESGVSEDAVSGHIQTLLPGRNACFECLPPLIVASGIDEGTLRRDGVCAASLPTTMGIIAGFLVQNSLKYLLNFGEVSYYLGYSALLDHFPREVLMPNPDCGDVWCRKRQEEWRGRWKAREGKRGGEGEMGKEHEVVHEENEWGIEVVDEEGEGEEGMKGEGGDTAASASLVGPTMGSSDGKRGEKKGLDKVRLEDLAAQLQSLQS 388
            P  +  SP++ P R KI+ MSAEV DSNPYSRLMALKRMGVVKEYERIR++S+LIVGLGG+GSVAAEMLTRCGIGKLLLFDYD VELANMNRLFFRPE AG  K+ AA  TLE INPDV +E H Y++T   HF+HFLDRL  G     S V LVLSCVDNYAART INQACNE ++ WMESGVSEDAVSGHIQTL PGR ACFECLPPL+VASG++E TLRR+GVCAASLPTTMGI+AG LVQN+LKYLL+FG++SYYLGYSAL DHFPR  L PNPDCG++WCR+RQE WRG+ +A + +     EMG+    VH  NEWGIEV+  EG   EG  G    +AAS            GK G      +  LE+LAA+L  LQS
Sbjct:   37 PCTTTSSPVIRPGRVKIDHMSAEVTDSNPYSRLMALKRMGVVKEYERIREVSVLIVGLGGVGSVAAEMLTRCGIGKLLLFDYDVVELANMNRLFFRPEHAGLRKTEAATATLESINPDVCLEGHPYDVTSVPHFEHFLDRLRRGGPDGRSPVHLVLSCVDNYAARTAINQACNEADVAWMESGVSEDAVSGHIQTLFPGRTACFECLPPLLVASGVEESTLRREGVCAASLPTTMGIVAGLLVQNALKYLLDFGDLSYYLGYSALTDHFPRHTLWPNPDCGNIWCRRRQETWRGKGRAWQRRETDCREMGEGAGPVHGTNEWGIEVIGREGVDVEGEVGVERGSAASV--------QQSGKEG-----TEASLEELAAELSQLQS 408
The following BLAST results are available for this feature:
BLAST of NO13G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855158.18.300e-13666.49ubiquitin-like modifier-activating enzyme 5 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00700NO13G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00700.1NO13G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00700.1.cds1NO13G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00700.1 ID=NO13G00700.1|Name=NO13G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp
ACAGGGCTGCATATCATCATGTCGTTGCCATCGTTGTCCCGACCATCTCC
GATATTGCCACCACGCACCAAAATCGAGGCCATGTCGGCCGAGGTCGTCG
ACAGCAACCCCTACAGCCGGCTCATGGCCCTCAAGCGCATGGGTGTCGTC
AAGGAGTACGAACGCATCCGCGACTTGTCCATCCTGATCGTAGGACTCGG
AGGCATCGGCTCCGTGGCCGCCGAAATGCTCACTCGGTGCGGCATCGGCA
AGCTCCTCCTCTTCGACTACGACACCGTTGAGCTTGCGAATATGAACCGC
CTCTTCTTCCGGCCCGAGCAAGCAGGTCAAACAAAATCAGCTGCCGCCAA
GGAAACTCTCGAAAAAATCAATCCTGATGTCTTCATCGAAGAGCATAGAT
ACAACATTACCGAAACAGCGCACTTCGACCACTTCCTCGATCGCCTCGCC
AACGGCAGTCTCACCAACAACTCCTCTGTCGATCTCGTCCTGTCTTGCGT
CGATAACTACGCGGCCCGCACAACAATCAACCAGGCTTGCAACGAACTCA
ATATCGTTTGGATGGAATCAGGTGTAAGCGAAGACGCAGTCTCGGGGCAC
ATTCAAACCCTTCTCCCCGGCCGCAACGCCTGCTTTGAATGCCTCCCCCC
CCTCATCGTCGCCAGTGGCATCGACGAAGGGACGCTGCGACGGGATGGTG
TGTGTGCTGCCTCCCTTCCTACCACTATGGGTATTATTGCAGGATTCCTA
GTCCAAAATTCGCTTAAGTATTTACTAAACTTTGGGGAGGTCTCTTATTA
TTTGGGATACAGTGCTTTGTTGGATCATTTCCCGAGGGAGGTGTTGATGC
CCAACCCGGACTGTGGGGATGTTTGGTGTCGGAAGCGGCAGGAGGAATGG
AGGGGCCGTTGGAAGGCAAGAGAGGGGAAGAGGGGGGGAGAAGGAGAAAT
GGGGAAGGAGCACGAGGTGGTGCATGAGGAGAATGAGTGGGGGATTGAGG
TTGTCGATGAGGAAGGAGAGGGAGAGGAGGGCATGAAAGGAGAAGGCGGA
GATACTGCTGCTTCTGCTTCCCTAGTTGGACCTACGATGGGTAGCAGCGA
CGGCAAGAGAGGGGAGAAAAAGGGTTTGGACAAGGTGAGATTGGAGGATT
TGGCGGCACAGCTGCAGTCGCTGCAATCGTCATGAGAACGGCAAATGGCA
CAGACGATGCCCGTGTGATGCATTGTGAAGATATATCGGCCTTGAAAAAG
GGGGCATTAAATAAGGCTAAGCTAAAGCACTTAACATTACCACCACCGTC
AGCACCAGCAGTAGCATTGTTCATTCGCAACAAAGAGAAGAACGCGGCGT
CCCA
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protein sequence of NO13G00700.1

>NO13G00700.1-protein ID=NO13G00700.1-protein|Name=NO13G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MSLPSLSRPSPILPPRTKIEAMSAEVVDSNPYSRLMALKRMGVVKEYERI
RDLSILIVGLGGIGSVAAEMLTRCGIGKLLLFDYDTVELANMNRLFFRPE
QAGQTKSAAAKETLEKINPDVFIEEHRYNITETAHFDHFLDRLANGSLTN
NSSVDLVLSCVDNYAARTTINQACNELNIVWMESGVSEDAVSGHIQTLLP
GRNACFECLPPLIVASGIDEGTLRRDGVCAASLPTTMGIIAGFLVQNSLK
YLLNFGEVSYYLGYSALLDHFPREVLMPNPDCGDVWCRKRQEEWRGRWKA
REGKRGGEGEMGKEHEVVHEENEWGIEVVDEEGEGEEGMKGEGGDTAASA
SLVGPTMGSSDGKRGEKKGLDKVRLEDLAAQLQSLQSS*
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mRNA from alignment at chr13:236470..237823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00700.1 ID=NO13G00700.1|Name=NO13G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at chr13:236470..237823+ (Nannochloropsis oceanica)
ACAGGGCTGCATATCATCATGTCGTTGCCATCGTTGTCCCGACCATCTCC
GATATTGCCACCACGCACCAAAATCGAGGCCATGTCGGCCGAGGTCGTCG
ACAGCAACCCCTACAGCCGGCTCATGGCCCTCAAGCGCATGGGTGTCGTC
AAGGAGTACGAACGCATCCGCGACTTGTCCATCCTGATCGTAGGACTCGG
AGGCATCGGCTCCGTGGCCGCCGAAATGCTCACTCGGTGCGGCATCGGCA
AGCTCCTCCTCTTCGACTACGACACCGTTGAGCTTGCGAATATGAACCGC
CTCTTCTTCCGGCCCGAGCAAGCAGGTCAAACAAAATCAGCTGCCGCCAA
GGAAACTCTCGAAAAAATCAATCCTGATGTCTTCATCGAAGAGCATAGAT
ACAACATTACCGAAACAGCGCACTTCGACCACTTCCTCGATCGCCTCGCC
AACGGCAGTCTCACCAACAACTCCTCTGTCGATCTCGTCCTGTCTTGCGT
CGATAACTACGCGGCCCGCACAACAATCAACCAGGCTTGCAACGAACTCA
ATATCGTTTGGATGGAATCAGGTGTAAGCGAAGACGCAGTCTCGGGGCAC
ATTCAAACCCTTCTCCCCGGCCGCAACGCCTGCTTTGAATGCCTCCCCCC
CCTCATCGTCGCCAGTGGCATCGACGAAGGGACGCTGCGACGGGATGGTG
TGTGTGCTGCCTCCCTTCCTACCACTATGGGTATTATTGCAGGATTCCTA
GTCCAAAATTCGCTTAAGTATTTACTAAACTTTGGGGAGGTCTCTTATTA
TTTGGGATACAGTGCTTTGTTGGATCATTTCCCGAGGGAGGTGTTGATGC
CCAACCCGGACTGTGGGGATGTTTGGTGTCGGAAGCGGCAGGAGGAATGG
AGGGGCCGTTGGAAGGCAAGAGAGGGGAAGAGGGGGGGAGAAGGAGAAAT
GGGGAAGGAGCACGAGGTGGTGCATGAGGAGAATGAGTGGGGGATTGAGG
TTGTCGATGAGGAAGGAGAGGGAGAGGAGGGCATGAAAGGAGAAGGCGGA
GATACTGCTGCTTCTGCTTCCCTAGTTGGACCTACGATGGGTAGCAGCGA
CGGCAAGAGAGGGGAGAAAAAGGGTTTGGACAAGGTGAGATTGGAGGATT
TGGCGGCACAGCTGCAGTCGCTGCAATCGTCATGAGAACGGCAAATGGCA
CAGACGATGCCCGTGTGATGCATTGTGAAGATATATCGGCCTTGAAAAAG
GGGGCATTAAATAAGGCTAAGCTAAAGCACTTAACATTACCACCACCGTC
AGCACCAGCAGTAGCATTGTTCATTCGCAACAAAGAGAAGAACGCGGCGT
CCCA
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Coding sequence (CDS) from alignment at chr13:236470..237823+

>NO13G00700.1 ID=NO13G00700.1|Name=NO13G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr13:236470..237823+ (Nannochloropsis oceanica)
ATGTCGTTGCCATCGTTGTCCCGACCATCTCCGATATTGCCACCACGCAC
CAAAATCGAGGCCATGTCGGCCGAGGTCGTCGACAGCAACCCCTACAGCC
GGCTCATGGCCCTCAAGCGCATGGGTGTCGTCAAGGAGTACGAACGCATC
CGCGACTTGTCCATCCTGATCGTAGGACTCGGAGGCATCGGCTCCGTGGC
CGCCGAAATGCTCACTCGGTGCGGCATCGGCAAGCTCCTCCTCTTCGACT
ACGACACCGTTGAGCTTGCGAATATGAACCGCCTCTTCTTCCGGCCCGAG
CAAGCAGGTCAAACAAAATCAGCTGCCGCCAAGGAAACTCTCGAAAAAAT
CAATCCTGATGTCTTCATCGAAGAGCATAGATACAACATTACCGAAACAG
CGCACTTCGACCACTTCCTCGATCGCCTCGCCAACGGCAGTCTCACCAAC
AACTCCTCTGTCGATCTCGTCCTGTCTTGCGTCGATAACTACGCGGCCCG
CACAACAATCAACCAGGCTTGCAACGAACTCAATATCGTTTGGATGGAAT
CAGGTGTAAGCGAAGACGCAGTCTCGGGGCACATTCAAACCCTTCTCCCC
GGCCGCAACGCCTGCTTTGAATGCCTCCCCCCCCTCATCGTCGCCAGTGG
CATCGACGAAGGGACGCTGCGACGGGATGGTGTGTGTGCTGCCTCCCTTC
CTACCACTATGGGTATTATTGCAGGATTCCTAGTCCAAAATTCGCTTAAG
TATTTACTAAACTTTGGGGAGGTCTCTTATTATTTGGGATACAGTGCTTT
GTTGGATCATTTCCCGAGGGAGGTGTTGATGCCCAACCCGGACTGTGGGG
ATGTTTGGTGTCGGAAGCGGCAGGAGGAATGGAGGGGCCGTTGGAAGGCA
AGAGAGGGGAAGAGGGGGGGAGAAGGAGAAATGGGGAAGGAGCACGAGGT
GGTGCATGAGGAGAATGAGTGGGGGATTGAGGTTGTCGATGAGGAAGGAG
AGGGAGAGGAGGGCATGAAAGGAGAAGGCGGAGATACTGCTGCTTCTGCT
TCCCTAGTTGGACCTACGATGGGTAGCAGCGACGGCAAGAGAGGGGAGAA
AAAGGGTTTGGACAAGGTGAGATTGGAGGATTTGGCGGCACAGCTGCAGT
CGCTGCAATCGTCATGA
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Synonyms
Publications