NO13G00670.2, NO13G00670.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00670.2
Unique NameNO13G00670.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1695
Alignment locationchr13:226303..228097 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:226303..228097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G00670.2 vs.
Match: EWM21739.1 (thioredoxin [Nannochloropsis gaditana]; EWM21740.1 thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 352.1 bits (902), Expect = 2.700e-93
Identity = 200/302 (66.23%), Postives = 229/302 (75.83%), Query Frame = 0 
Query:    1 MYRRLLSDNTRRRITDVSLRYRSAPPPLPLVCCRGAASSKPPPSGRLPSTG---NGLIGMPPPPRSPPSTVKSKPKISPPAAAARAPSIIEVDVKNFVALLNSPVPVILDCYATWCDPCKKLTPVLEKIVGKYPGRVILGKLDVDKHPELAAQLKVSSLPAVFGLCEGKLVDRFVGMPTEPILAGFLDKMLSIIPPAGTDEGVDGAPSVAERQEADLAMADSLM-KGGNNGGKEEKDKATKAGALYKQVYEELAAEETPAPYLQARCLAGLARCALMGGAAEEARQIVQLLRTKHKAEMESI 299
            M  RL + +  RR   VS R R     +  +  RG ASSK PPS   P  G   NGLIG+PP PR PPS   S+P  +P  A AR PS+IEVDVKNFVALL SPVPVILDCYA+WCDPCKKLTPVLE+IVGKYPGR+IL KLDVD H ELAAQL VSSLPAVFGLCEGKLVDRFVGMPTEP+LAGFLDKMLSIIP +   EG  G PS AE+QEA L  AD+L+ +G   GG  E   AT+AGALY+QVYEEL  E+TPA YLQARCLAGLARCAL GGA EEA+++V +L+ +HKA+ME++
Sbjct:   40 MNSRLFAVSACRRA--VSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPNPRPPPSRKPSQP--TPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEG-KGEPSPAEKQEAVLKRADALLTEGTKEGGSGE--TATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETM 334
The following BLAST results are available for this feature:
BLAST of NO13G00670.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21739.12.700e-9366.23thioredoxin [Nannochloropsis gaditana]; EWM21740.1... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00670NO13G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00670.2NO13G00670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00670.2.cds1NO13G00670.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00670.2.cds2NO13G00670.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00670.2 ID=NO13G00670.2|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp
AAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGTTGT
CTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGATCC
GCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTCCAA
ACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAGGCA
TGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCCAAG
ATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGTGGA
CGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCCTGG
ACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTGCTG
GAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACTCGA
CGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTCTCC
CGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTAGGC
ATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTCCAT
CATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCGTGG
CGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAAGGA
GGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGGTGC
GTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAGCGC
CTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTGATG
GGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGACGAA
GCACAAGGCGGAGATGGAGAGTATACTGGAGGTTGCCAGTGCCGTCTCTT
TCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCAGTA
GAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGACTGA
TCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAACGGT
TCGAGGCAGCGATGAATGAGTGCTTGGAGGTGGGAAGTAAAAGGGAGGGA
TGGAGGGAGGGGGAGAGAGATGAGGATAAAAGGAGGATTTTAATAGATTA
TTTTCATTTAGAAACATATTTGACTGAAAATTGGACAATTTGTCATCTTG
AAATATTCTCATTCTTGTCACCCTCTCCCCCTCCACCTACACAGATCATC
AAGCGCGAGAAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACTCAA
GATTTTTGAGGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAGGACGGC
AACGCATGACGAATTACCTTTTTTTGTAGATCCGGTTATAGGTGAAGAGG
ATGCTTGTCCTTCCAACCCCCTCCTCCTGTCTCCTCCTTCTTTTACTCCC
AGGCCTTCGCCTTTCTGCGCCGGAAGAATTTCATCAAAGAAGTATTTGCT
CTTTCAAGATAACCAAGTGCGAGACATGCCTAGTACCAACAAAAATAGAA
ATGAAGACGATGAGGAGAACGAGCAAGAGAGGAGAAATACAAAGAGGCCG
TGGGACAAAAAGTAACAACCACATGTACAATGGAAAGAACAATGT
back to top

protein sequence of NO13G00670.2

>NO13G00670.2-protein ID=NO13G00670.2-protein|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MYRRLLSDNTRRRITDVSLRYRSAPPPLPLVCCRGAASSKPPPSGRLPST
GNGLIGMPPPPRSPPSTVKSKPKISPPAAAARAPSIIEVDVKNFVALLNS
PVPVILDCYATWCDPCKKLTPVLEKIVGKYPGRVILGKLDVDKHPELAAQ
LKVSSLPAVFGLCEGKLVDRFVGMPTEPILAGFLDKMLSIIPPAGTDEGV
DGAPSVAERQEADLAMADSLMKGGNNGGKEEKDKATKAGALYKQVYEELA
AEETPAPYLQARCLAGLARCALMGGAAEEARQIVQLLRTKHKAEMESILE
VASAVSFAEVVMQAPPEEGGLSVEDTLKKLQGDVLKAPTDLEARYQLALK
CFQLQRFEAAMNECLEVGSKREGWREGERDEDKRRILIDYFHLETYLTEN
WTICHLEIFSFLSPSPPPPTQIIKREKEWKEGAAKALLLKIFEALGPQNE
VTKKGRQRMTNYLFL*
back to top

mRNA from alignment at chr13:226303..228097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00670.2 ID=NO13G00670.2|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at chr13:226303..228097- (Nannochloropsis oceanica)
AAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGTTGT
CTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGATCC
GCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTCCAA
ACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAGGCA
TGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCCAAG
ATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGTGGA
CGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCCTGG
ACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTGCTG
GAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACTCGA
CGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTCTCC
CGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTAGGC
ATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTCCAT
CATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCGTGG
CGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAAGGA
GGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGGTGC
GTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAGCGC
CTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTGATG
GGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGACGAA
GCACAAGGCGGAGATGGAGAGTATACTGGTAAGAGAAAGGAAGGGAAGGA
CAGGGGAAAGAAGAAGTCCTGTTGAGATGCTGATGCACGACTTCTCGTCT
ATATTCCGCCCTGCATTTCCCGTAACAGGAGGTTGCCAGTGCCGTCTCTT
TCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCAGTA
GAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGACTGA
TCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAACGGT
TCGAGGCAGCGATGAATGAGTGCTTGGAGGTGGGAAGTAAAAGGGAGGGA
TGGAGGGAGGGGGAGAGAGATGAGGATAAAAGGAGGATTTTAATAGATTA
TTTTCATTTAGAAACATATTTGACTGAAAATTGGACAATTTGTCATCTTG
AAATATTCTCATTCTTGTCACCCTCTCCCCCTCCACCTACACAGATCATC
AAGCGCGAGAAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACTCAA
GATTTTTGAGGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAGGACGGC
AACGCATGACGAATTACCTTTTTTTGTAGATCCGGTTATAGGTGAAGAGG
ATGCTTGTCCTTCCAACCCCCTCCTCCTGTCTCCTCCTTCTTTTACTCCC
AGGCCTTCGCCTTTCTGCGCCGGAAGAATTTCATCAAAGAAGTATTTGCT
CTTTCAAGATAACCAAGTGCGAGACATGCCTAGTACCAACAAAAATAGAA
ATGAAGACGATGAGGAGAACGAGCAAGAGAGGAGAAATACAAAGAGGCCG
TGGGACAAAAAGTAACAACCACATGTACAATGGAAAGAACAATGT
back to top

Coding sequence (CDS) from alignment at chr13:226303..228097-

>NO13G00670.2 ID=NO13G00670.2|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr13:226303..228097- (Nannochloropsis oceanica)
ATGTACCGTCGCTTGTTGTCTGACAACACGCGCAGGAGGATTACCGATGT
CTCCCTACGCTATCGATCCGCCCCACCTCCTTTGCCCCTCGTATGCTGCC
GGGGCGCAGCCTCCTCCAAACCACCCCCCTCCGGCCGTCTACCCAGCACA
GGCAACGGGCTGATAGGCATGCCCCCTCCTCCCCGTTCCCCACCCTCTAC
AGTAAAGTCCAAGCCCAAGATATCCCCTCCAGCGGCGGCCGCACGCGCGC
CATCAATCATCGAGGTGGACGTCAAAAATTTTGTGGCCTTACTCAACTCC
CCCGTGCCCGTCATCCTGGACTGTTACGCCACTTGGTGCGACCCTTGCAA
GAAGCTCACTCCGGTGCTGGAGAAAATCGTGGGGAAGTATCCAGGTAGGG
TTATTCTCGGAAAACTCGACGTGGACAAGCACCCAGAGCTGGCAGCGCAA
CTGAAAGTCAGCTCTCTCCCGGCCGTCTTCGGTCTCTGCGAGGGCAAGCT
AGTCGATCGATTCGTAGGCATGCCCACCGAGCCCATTCTGGCGGGATTCC
TGGACAAGATGCTCTCCATCATTCCACCTGCAGGCACCGATGAGGGAGTG
GATGGAGCGCCTTCCGTGGCGGAGAGACAGGAGGCTGATCTGGCCATGGC
CGATAGTTTGATGAAAGGAGGAAACAATGGGGGGAAAGAGGAGAAGGACA
AGGCCACCAAAGCGGGTGCGTTGTATAAACAAGTGTATGAGGAACTGGCA
GCAGAGGAAACACCAGCGCCTTATTTGCAGGCGCGATGCTTGGCGGGTTT
GGCGCGGTGTGCATTGATGGGAGGAGCAGCGGAGGAGGCGAGGCAAATTG
TGCAACTACTGAGGACGAAGCACAAGGCGGAGATGGAGAGTATACTGGAG
GTTGCCAGTGCCGTCTCTTTCGCGGAAGTGGTTATGCAGGCGCCGCCAGA
GGAAGGAGGGCTCTCAGTAGAGGACACATTAAAGAAGCTGCAGGGGGATG
TACTTAAGGCACCGACTGATCTGGAGGCCCGGTATCAGCTGGCGTTGAAG
TGCTTCCAGCTGCAACGGTTCGAGGCAGCGATGAATGAGTGCTTGGAGGT
GGGAAGTAAAAGGGAGGGATGGAGGGAGGGGGAGAGAGATGAGGATAAAA
GGAGGATTTTAATAGATTATTTTCATTTAGAAACATATTTGACTGAAAAT
TGGACAATTTGTCATCTTGAAATATTCTCATTCTTGTCACCCTCTCCCCC
TCCACCTACACAGATCATCAAGCGCGAGAAGGAGTGGAAGGAAGGGGCTG
CCAAAGCCTTGCTACTCAAGATTTTTGAGGCCTTGGGCCCACAAAACGAA
GTGACCAAGAAAGGACGGCAACGCATGACGAATTACCTTTTTTTGTAG
back to top
Synonyms
Publications