NO13G00660.1, NO13G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00660.1
Unique NameNO13G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length698
Alignment locationchr13:225434..226289 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:225434..226289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G00660.1 vs.
Match: XP_005855160.1 (cathepsin l-like proteinase, partial [Nannochloropsis gaditana CCMP526]; EKU21201.1 cathepsin l-like proteinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 206.8 bits (525), Expect = 4.700e-50
Identity = 101/136 (74.26%), Postives = 113/136 (83.09%), Query Frame = 0
Query:   22 PEGGFFKETYRSGATPGASKGLTDETGTLLPSS-----SIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEEREGGKEGGG 153
            PEGGFFKETYRSGA PGAS+GLTD +GTLLPSS     S+P SPRNICTSIFYLLT+EAP+G+WH N+SNI+HYYQGGDPL+Y+LL PSTG  E+HVLGPDLA G TLQLIV+GGVWKATVL      EGG  G G
Sbjct:  343 PEGGFFKETYRSGACPGASQGLTDTSGTLLPSSPSPASSLPSSPRNICTSIFYLLTTEAPVGFWHKNRSNIVHYYQGGDPLAYYLLPPSTGRLERHVLGPDLAHGHTLQLIVEGGVWKATVL------EGGSVGWG 472          
The following BLAST results are available for this feature:
BLAST of NO13G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855160.14.700e-5074.26cathepsin l-like proteinase, partial [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00660NO13G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00660.1NO13G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00660.1.cds1NO13G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00660.1.cds2NO13G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00660.1 ID=NO13G00660.1|Name=NO13G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=698bp
AATTTCAGAATCATATCTCTTTTTTCTCCACGTCGTTGCCCCTCCTAGCT
AGTTTCCTCTCTCGACAAGGGCAGAGACCACACAAGAATACCCGGGACAC
TCCTCACGACCCGTTGTCCCTTTATCATACCTTTCTAACCATAATAATAC
AATACCATCCACCCACCCACCCACAGACATAACTCCAGACAGACTCCTTC
ATCCACTTCCTTCCTTCCGTAACGTTCCTCTCGATGAAAAAAATCAACGA
CTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGGACTCCATCCACACCCTG
AAGGTGGATTTTTTAAGGAAACGTACCGAAGCGGCGCCACGCCAGGAGCT
TCCAAAGGCCTCACCGACGAGACGGGCACCCTCCTCCCCTCGTCCTCCAT
CCCTCTCTCCCCTCGTAATATCTGCACCTCCATCTTCTACCTCCTTACTA
GCGAAGCTCCCATCGGGTACTGGCACATGAACAAGTCAAATATAATCCAC
TACTACCAAGGAGGTGATCCGCTCTCCTACTTCCTCCTTCACCCTTCGAC
GGGTGCGTGGGAAAAGCACGTACTAGGCCCTGATCTTGCGAAAGGACAGA
CATTGCAATTGATTGTGGATGGAGGAGTATGGAAGGCGACGGTGTTGGAG
CAGCAGGAGGAGAGGGAGGGAGGGAAGGAGGGGGGTGGGGATTGTTAG
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protein sequence of NO13G00660.1

>NO13G00660.1-protein ID=NO13G00660.1-protein|Name=NO13G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MKKINDCSAQEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTL
LPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYF
LLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEEREGGKEG
GGDC*
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mRNA from alignment at chr13:225434..226289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00660.1 ID=NO13G00660.1|Name=NO13G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=856bp|location=Sequence derived from alignment at chr13:225434..226289- (Nannochloropsis oceanica)
AATTTCAGAATCATATCTCTTTTTTCTCCACGTCGTTGCCCCTCCTAGCT AGTTTCCTCTCTCGACAAGGGCAGAGACCACACAAGAATACCCGGGACAC TCCTCACGACCCGTTGTCCCTTTATCATACCTTTCTAACCATAATAATAC AATACCATCCACCCACCCACCCACAGACATAACTCCAGACAGACTCCTTC ATCCACTTCCTTCCTTCCGTAACGTTCCTCTCGATGAAAAAAATCAACGA CTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGGACTCCATCCACGTACGT TTGATGAAGGAAAAAAGTGATGGGGTGGGAGAGGCAAGAAAGTCGACAGG GAGGAACATCCCTATCATTGAAACATTGGATTTCTTCTATCCTTTCTTGC ATCATTCTCATCCATTCTCCTCCCTTGCCCAACGTTTGATCCCTCATCTT AGACCCTGAAGGTGGATTTTTTAAGGAAACGTACCGAAGCGGCGCCACGC CAGGAGCTTCCAAAGGCCTCACCGACGAGACGGGCACCCTCCTCCCCTCG TCCTCCATCCCTCTCTCCCCTCGTAATATCTGCACCTCCATCTTCTACCT CCTTACTAGCGAAGCTCCCATCGGGTACTGGCACATGAACAAGTCAAATA TAATCCACTACTACCAAGGAGGTGATCCGCTCTCCTACTTCCTCCTTCAC CCTTCGACGGGTGCGTGGGAAAAGCACGTACTAGGCCCTGATCTTGCGAA AGGACAGACATTGCAATTGATTGTGGATGGAGGAGTATGGAAGGCGACGG TGTTGGAGCAGCAGGAGGAGAGGGAGGGAGGGAAGGAGGGGGGTGGGGAT TGTTAG
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Coding sequence (CDS) from alignment at chr13:225434..226289-

>NO13G00660.1 ID=NO13G00660.1|Name=NO13G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr13:225434..226289- (Nannochloropsis oceanica)
ATGAAAAAAATCAACGACTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGG
ACTCCATCCACACCCTGAAGGTGGATTTTTTAAGGAAACGTACCGAAGCG
GCGCCACGCCAGGAGCTTCCAAAGGCCTCACCGACGAGACGGGCACCCTC
CTCCCCTCGTCCTCCATCCCTCTCTCCCCTCGTAATATCTGCACCTCCAT
CTTCTACCTCCTTACTAGCGAAGCTCCCATCGGGTACTGGCACATGAACA
AGTCAAATATAATCCACTACTACCAAGGAGGTGATCCGCTCTCCTACTTC
CTCCTTCACCCTTCGACGGGTGCGTGGGAAAAGCACGTACTAGGCCCTGA
TCTTGCGAAAGGACAGACATTGCAATTGATTGTGGATGGAGGAGTATGGA
AGGCGACGGTGTTGGAGCAGCAGGAGGAGAGGGAGGGAGGGAAGGAGGGG
GGTGGGGATTGTTAG
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Synonyms
Publications