NO13G00630.1, NO13G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00630.1
Unique NameNO13G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2333
Alignment locationchr13:214877..217209 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:214877..217209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G00630.1 vs.
Match: EWM21736.1 (cysteine protease [Nannochloropsis gaditana])

HSP 1 Score: 744.6 bits (1921), Expect = 2.400e-211
Identity = 388/593 (65.43%), Postives = 438/593 (73.86%), Query Frame = 0
Query:    1 MRLLSFLLLGLVATTALSTTTTTTPSTFDNENPSSSPLFPLFRAWMEHHNISIPKAHFAHRLSVFAANHAFILAHNAQLHPRPSYTLGHNRFSHLTFEEFRAMHLGWTRPTEAVPPSFQPAFNDDMITTTTSTASRALRGSIDLANDTKNEDTNSVVG---QHFPSYIFPLPPWIPHPDPSAPTDDPPPPSSLPASVDWVSKGAVTPVKDQGSCGSCYSFSAVGAVEGAYFLTNGELLELSMQEIVDCDDLDGGCQGGEMQQTFKWINGNGGLCLLSDYPYVSGTTAEEQKVCSTCPVVPGTAPESWTTVRRNSMEGLKEAVAGGPVSVAVGASRAWMFYESGVFDGACEGELNHGVLCVGYG---GEEAGEYWKVKNSWGTGWGMDGYILLKRDDGDKEAACGILQDASFPILPQPSASSSISSLSALPAAVATLVEEKADNSSKEWTAFTSPTQVQGSATARDCGGGTAVFTSINIIPSSIEKNQLVTVLAEGVLTKPTLSGSYYLSVIYEGAQLYAHSGSACGNETVSLPLNAGIVHVFGFACPVNPGPVEYGLDVTLPSIAPFGGYLISIKGKDQDGADLVCIEAELQL 588
            MR+L       +AT A    T         E      L PLFRAWM+HHNISIP +  AHRL +FAANHAFIL+HNAQ HPRPSYTLGHNRFSHLTF+EFRAMHLG+TRPT A PPSF+    D+         SR+LRG +         D N  +G   + FP Y FP P W+PH +         P SSLP S+DWV KGAVTPVKDQG CGSCYSFSAVGAVEGAY+L  G L E SMQEIVDCD LDGGCQGGEMQQTFKW+  NGGLCLLSDYPYVSGTTAEEQ VC  CPVVPGTAPE W TVRRNSM  L+EAVA  PVSVAVGASRAWMFYE+GVFDG CE ELNHGVLCVGYG   G E G+YWKVKNSWG  WGM+GYILLKRDD DK+AACGI++DAS+PILP      S+  ++    A   ++ +   +S    TA  +P  +QGSATARDCGG TA+F+++ I P ++EKN+LVTV+AEG LTKPTLSG Y LSV+YEGAQLY+H+G  CGNETV+LPLNAG VHVFGFACP NPGPV YGLDV LPSIAP G YLISIKG DQD A LVCIEA+L+L
Sbjct:    1 MRVLFPFFWAFLATCAALNDTIVD---VQEERDDILSLRPLFRAWMKHHNISIPPSKIAHRLRIFAANHAFILSHNAQQHPRPSYTLGHNRFSHLTFDEFRAMHLGFTRPTTAFPPSFE---EDETPQNDALATSRSLRGHLSTT------DKNHAIGMNTERFPPYTFPRPAWLPHIEN--------PSSSLPPSIDWVEKGAVTPVKDQGQCGSCYSFSAVGAVEGAYYLQTGVLSEFSMQEIVDCDGLDGGCQGGEMQQTFKWMQMNGGLCLLSDYPYVSGTTAEEQAVCLPCPVVPGTAPEKWITVRRNSMTELQEAVAAQPVSVAVGASRAWMFYEAGVFDGKCEQELNHGVLCVGYGGGEGSEEGQYWKVKNSWGPEWGMEGYILLKRDDFDKQAACGIMEDASYPILP------SVPGMTGNEPARPPVISQAGRSSGS--TAGLNP--LQGSATARDCGGSTAIFSNVRISPDAVEKNELVTVMAEGTLTKPTLSGRYTLSVVYEGAQLYSHAGDVCGNETVALPLNAGTVHVFGFACPANPGPVSYGLDVILPSIAPSGEYLISIKGHDQDNAQLVCIEADLKL 563          
The following BLAST results are available for this feature:
BLAST of NO13G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21736.12.400e-21165.43cysteine protease [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00630NO13G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00630.1NO13G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00630.1.cds1NO13G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00630.1 ID=NO13G00630.1|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp
AACACAGCGACCATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGC
CACCACCGCCCTATCCACGACGACTACGACCACCCCCAGCACCTTCGACA
ATGAGAATCCGTCATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATG
GAGCACCACAACATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAG
CGTCTTTGCCGCCAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGC
ATCCCCGGCCTTCGTACACCTTGGGACACAACCGCTTTTCTCACTTGACC
TTTGAAGAGTTCCGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGC
AGTCCCTCCCTCCTTCCAGCCCGCCTTCAACGACGATATGATCACCACCA
CCACCTCCACCGCCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAAT
GACACCAAGAACGAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTC
CTACATCTTCCCCTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTC
CCACCGACGACCCCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGG
GTATCCAAAGGGGCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTC
CTGCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCA
CCAATGGTGAATTGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGAT
GATTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATG
GATTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCA
GTGGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTC
CCAGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGA
GGGTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTG
CGTCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGC
GAGGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGA
AGCAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGA
TGGACGGCTATATCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCG
TGTGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGC
CTCTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCC
TGGTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACC
TCTCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGG
CACTGCTGTCTTCACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAA
ACCAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTG
AGCGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGC
TCATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATG
CAGGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCG
GTGGAATATGGCTTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGG
GTACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTT
GCATTGAGGCGGAGCTACAGTTGTGAGGAGGAGGGAGGGAGATAGAAAGG
GAGAGATGAGAGCGTTTGTGACCCACGATGGACTTGCGTATGTGCGCTTT
GTCTCCCGATGCATTCTCAGTGAATATTTTAAACAGTATTTTACGTCATT
ATTCGAAAAGATCATACAAAGGGTGGAGTGCAGGAGATTTTGGGGGGGAA
GGAGGGAGAGAGGAAACGGGGGGTTGTACAGGGGTTGGAGCGCTTGTCCT
CAAAAACATTAAAATATTAAGGCACGAAAAAGTACGAAAGGCTATGGGAA
ATGAACAGATTGACAGAGAGAAGGAGAGCGAAAAAAGAGAGAGTAAAGAC
ACCTACAAAATACTGATGGATGTACAGGTGAGGAAAGGGAAGAAAGGAGG
CTGGGTTTGGGGGAGGTATGAATATGAGCCATAATTACCCAACATACCTA
CGACCACTAGAAGAGGAATTGGATGTCGCATAAGTAGGCGGCCTACCACT
TTATTTCTTGGGCCAAAAGAAAGAAGAAAAAAATAGTCCATTAGACCGTC
CTGTGGTAGCAATGGGCCGAACCCTGGACATTT
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protein sequence of NO13G00630.1

>NO13G00630.1-protein ID=NO13G00630.1-protein|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MRLLSFLLLGLVATTALSTTTTTTPSTFDNENPSSSPLFPLFRAWMEHHN
ISIPKAHFAHRLSVFAANHAFILAHNAQLHPRPSYTLGHNRFSHLTFEEF
RAMHLGWTRPTEAVPPSFQPAFNDDMITTTTSTASRALRGSIDLANDTKN
EDTNSVVGQHFPSYIFPLPPWIPHPDPSAPTDDPPPPSSLPASVDWVSKG
AVTPVKDQGSCGSCYSFSAVGAVEGAYFLTNGELLELSMQEIVDCDDLDG
GCQGGEMQQTFKWINGNGGLCLLSDYPYVSGTTAEEQKVCSTCPVVPGTA
PESWTTVRRNSMEGLKEAVAGGPVSVAVGASRAWMFYESGVFDGACEGEL
NHGVLCVGYGGEEAGEYWKVKNSWGTGWGMDGYILLKRDDGDKEAACGIL
QDASFPILPQPSASSSISSLSALPAAVATLVEEKADNSSKEWTAFTSPTQ
VQGSATARDCGGGTAVFTSINIIPSSIEKNQLVTVLAEGVLTKPTLSGSY
YLSVIYEGAQLYAHSGSACGNETVSLPLNAGIVHVFGFACPVNPGPVEYG
LDVTLPSIAPFGGYLISIKGKDQDGADLVCIEAELQL*
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mRNA from alignment at chr13:214877..217209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00630.1 ID=NO13G00630.1|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at chr13:214877..217209- (Nannochloropsis oceanica)
AACACAGCGACCATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGC CACCACCGCCCTATCCACGACGACTACGACCACCCCCAGCACCTTCGACA ATGAGAATCCGTCATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATG GAGCACCACAACATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAG CGTCTTTGCCGCCAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGC ATCCCCGGCCTTCGTACACCTTGGGACACAACCGCTTTTCTCACTTGACC TTTGAAGAGTTCCGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGC AGTCCCTCCCTCCTTCCAGCCCGCCTTCAACGACGATATGATCACCACCA CCACCTCCACCGCCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAAT GACACCAAGAACGAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTC CTACATCTTCCCCTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTC CCACCGACGACCCCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGG GTATCCAAAGGGGCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTC CTGCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCA CCAATGGTGAATTGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGAT GATTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATG GATTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCA GTGGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTC CCAGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGA GGGTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTG CGTCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGC GAGGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGA AGCAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGA TGGACGGCTATATCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCG TGTGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGC CTCTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCC TGGTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACC TCTCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGG CACTGCTGTCTTCACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAA ACCAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTG AGCGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGC TCATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATG CAGGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCG GTGGAATATGGCTTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGG GTACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTT GCATTGAGGCGGAGCTACAGTTGTGAGGAGGAGGGAGGGAGATAGAAAGG GAGAGATGAGAGCGTTTGTGACCCACGATGGACTTGCGTATGTGCGCTTT GTCTCCCGATGCATTCTCAGTGAATATTTTAAACAGTATTTTACGTCATT ATTCGAAAAGATCATACAAAGGGTGGAGTGCAGGAGATTTTGGGGGGGAA GGAGGGAGAGAGGAAACGGGGGGTTGTACAGGGGTTGGAGCGCTTGTCCT CAAAAACATTAAAATATTAAGGCACGAAAAAGTACGAAAGGCTATGGGAA ATGAACAGATTGACAGAGAGAAGGAGAGCGAAAAAAGAGAGAGTAAAGAC ACCTACAAAATACTGATGGATGTACAGGTGAGGAAAGGGAAGAAAGGAGG CTGGGTTTGGGGGAGGTATGAATATGAGCCATAATTACCCAACATACCTA CGACCACTAGAAGAGGAATTGGATGTCGCATAAGTAGGCGGCCTACCACT TTATTTCTTGGGCCAAAAGAAAGAAGAAAAAAATAGTCCATTAGACCGTC CTGTGGTAGCAATGGGCCGAACCCTGGACATTT
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Coding sequence (CDS) from alignment at chr13:214877..217209-

>NO13G00630.1 ID=NO13G00630.1|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr13:214877..217209- (Nannochloropsis oceanica)
ATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGCCACCACCGCCCT
ATCCACGACGACTACGACCACCCCCAGCACCTTCGACAATGAGAATCCGT
CATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATGGAGCACCACAAC
ATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAGCGTCTTTGCCGC
CAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGCATCCCCGGCCTT
CGTACACCTTGGGACACAACCGCTTTTCTCACTTGACCTTTGAAGAGTTC
CGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGCAGTCCCTCCCTC
CTTCCAGCCCGCCTTCAACGACGATATGATCACCACCACCACCTCCACCG
CCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAATGACACCAAGAAC
GAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTCCTACATCTTCCC
CTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTCCCACCGACGACC
CCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGGGTATCCAAAGGG
GCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTCCTGCTACTCGTT
TTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCACCAATGGTGAAT
TGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGATGATTTGGACGGA
GGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATGGATTAATGGCAA
CGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCAGTGGTACGACTG
CGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTCCCAGGCACGGCC
CCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGAGGGTTTGAAGGA
GGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTGCGTCACGAGCGT
GGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGCGAGGGGGAGTTG
AACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGAAGCAGGGGAGTA
CTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGATGGACGGCTATA
TCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCGTGTGGAATTCTG
CAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGCCTCTTCCTCCAT
CTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCCTGGTCGAGGAAA
AGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACCTCTCCAACCCAA
GTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGGCACTGCTGTCTT
CACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAAACCAACTCGTCA
CGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTGAGCGGGAGCTAC
TATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGCTCATTCGGGGAG
TGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATGCAGGGATTGTTC
ACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCGGTGGAATATGGC
TTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGGGTACCTGATCTC
AATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTTGCATTGAGGCGG
AGCTACAGTTGTGA
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Synonyms
Publications