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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:214877..217209 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00630.1 vs.
Match: EWM21736.1 (cysteine protease [Nannochloropsis gaditana]) HSP 1 Score: 744.6 bits (1921), Expect = 2.400e-211 Identity = 388/593 (65.43%), Postives = 438/593 (73.86%), Query Frame = 0
Query: 1 MRLLSFLLLGLVATTALSTTTTTTPSTFDNENPSSSPLFPLFRAWMEHHNISIPKAHFAHRLSVFAANHAFILAHNAQLHPRPSYTLGHNRFSHLTFEEFRAMHLGWTRPTEAVPPSFQPAFNDDMITTTTSTASRALRGSIDLANDTKNEDTNSVVG---QHFPSYIFPLPPWIPHPDPSAPTDDPPPPSSLPASVDWVSKGAVTPVKDQGSCGSCYSFSAVGAVEGAYFLTNGELLELSMQEIVDCDDLDGGCQGGEMQQTFKWINGNGGLCLLSDYPYVSGTTAEEQKVCSTCPVVPGTAPESWTTVRRNSMEGLKEAVAGGPVSVAVGASRAWMFYESGVFDGACEGELNHGVLCVGYG---GEEAGEYWKVKNSWGTGWGMDGYILLKRDDGDKEAACGILQDASFPILPQPSASSSISSLSALPAAVATLVEEKADNSSKEWTAFTSPTQVQGSATARDCGGGTAVFTSINIIPSSIEKNQLVTVLAEGVLTKPTLSGSYYLSVIYEGAQLYAHSGSACGNETVSLPLNAGIVHVFGFACPVNPGPVEYGLDVTLPSIAPFGGYLISIKGKDQDGADLVCIEAELQL 588
MR+L +AT A T E L PLFRAWM+HHNISIP + AHRL +FAANHAFIL+HNAQ HPRPSYTLGHNRFSHLTF+EFRAMHLG+TRPT A PPSF+ D+ SR+LRG + D N +G + FP Y FP P W+PH + P SSLP S+DWV KGAVTPVKDQG CGSCYSFSAVGAVEGAY+L G L E SMQEIVDCD LDGGCQGGEMQQTFKW+ NGGLCLLSDYPYVSGTTAEEQ VC CPVVPGTAPE W TVRRNSM L+EAVA PVSVAVGASRAWMFYE+GVFDG CE ELNHGVLCVGYG G E G+YWKVKNSWG WGM+GYILLKRDD DK+AACGI++DAS+PILP S+ ++ A ++ + +S TA +P +QGSATARDCGG TA+F+++ I P ++EKN+LVTV+AEG LTKPTLSG Y LSV+YEGAQLY+H+G CGNETV+LPLNAG VHVFGFACP NPGPV YGLDV LPSIAP G YLISIKG DQD A LVCIEA+L+L
Sbjct: 1 MRVLFPFFWAFLATCAALNDTIVD---VQEERDDILSLRPLFRAWMKHHNISIPPSKIAHRLRIFAANHAFILSHNAQQHPRPSYTLGHNRFSHLTFDEFRAMHLGFTRPTTAFPPSFE---EDETPQNDALATSRSLRGHLSTT------DKNHAIGMNTERFPPYTFPRPAWLPHIEN--------PSSSLPPSIDWVEKGAVTPVKDQGQCGSCYSFSAVGAVEGAYYLQTGVLSEFSMQEIVDCDGLDGGCQGGEMQQTFKWMQMNGGLCLLSDYPYVSGTTAEEQAVCLPCPVVPGTAPEKWITVRRNSMTELQEAVAAQPVSVAVGASRAWMFYEAGVFDGKCEQELNHGVLCVGYGGGEGSEEGQYWKVKNSWGPEWGMEGYILLKRDDFDKQAACGIMEDASYPILP------SVPGMTGNEPARPPVISQAGRSSGS--TAGLNP--LQGSATARDCGGSTAIFSNVRISPDAVEKNELVTVMAEGTLTKPTLSGRYTLSVVYEGAQLYSHAGDVCGNETVALPLNAGTVHVFGFACPANPGPVSYGLDVILPSIAPSGEYLISIKGHDQDNAQLVCIEADLKL 563
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00630.1 ID=NO13G00630.1|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp AACACAGCGACCATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGC CACCACCGCCCTATCCACGACGACTACGACCACCCCCAGCACCTTCGACA ATGAGAATCCGTCATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATG GAGCACCACAACATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAG CGTCTTTGCCGCCAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGC ATCCCCGGCCTTCGTACACCTTGGGACACAACCGCTTTTCTCACTTGACC TTTGAAGAGTTCCGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGC AGTCCCTCCCTCCTTCCAGCCCGCCTTCAACGACGATATGATCACCACCA CCACCTCCACCGCCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAAT GACACCAAGAACGAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTC CTACATCTTCCCCTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTC CCACCGACGACCCCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGG GTATCCAAAGGGGCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTC CTGCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCA CCAATGGTGAATTGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGAT GATTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATG GATTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCA GTGGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTC CCAGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGA GGGTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTG CGTCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGC GAGGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGA AGCAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGA TGGACGGCTATATCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCG TGTGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGC CTCTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCC TGGTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACC TCTCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGG CACTGCTGTCTTCACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAA ACCAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTG AGCGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGC TCATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATG CAGGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCG GTGGAATATGGCTTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGG GTACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTT GCATTGAGGCGGAGCTACAGTTGTGAGGAGGAGGGAGGGAGATAGAAAGG GAGAGATGAGAGCGTTTGTGACCCACGATGGACTTGCGTATGTGCGCTTT GTCTCCCGATGCATTCTCAGTGAATATTTTAAACAGTATTTTACGTCATT ATTCGAAAAGATCATACAAAGGGTGGAGTGCAGGAGATTTTGGGGGGGAA GGAGGGAGAGAGGAAACGGGGGGTTGTACAGGGGTTGGAGCGCTTGTCCT CAAAAACATTAAAATATTAAGGCACGAAAAAGTACGAAAGGCTATGGGAA ATGAACAGATTGACAGAGAGAAGGAGAGCGAAAAAAGAGAGAGTAAAGAC ACCTACAAAATACTGATGGATGTACAGGTGAGGAAAGGGAAGAAAGGAGG CTGGGTTTGGGGGAGGTATGAATATGAGCCATAATTACCCAACATACCTA CGACCACTAGAAGAGGAATTGGATGTCGCATAAGTAGGCGGCCTACCACT TTATTTCTTGGGCCAAAAGAAAGAAGAAAAAAATAGTCCATTAGACCGTC CTGTGGTAGCAATGGGCCGAACCCTGGACATTT back to topprotein sequence of NO13G00630.1 >NO13G00630.1-protein ID=NO13G00630.1-protein|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MRLLSFLLLGLVATTALSTTTTTTPSTFDNENPSSSPLFPLFRAWMEHHN ISIPKAHFAHRLSVFAANHAFILAHNAQLHPRPSYTLGHNRFSHLTFEEF RAMHLGWTRPTEAVPPSFQPAFNDDMITTTTSTASRALRGSIDLANDTKN EDTNSVVGQHFPSYIFPLPPWIPHPDPSAPTDDPPPPSSLPASVDWVSKG AVTPVKDQGSCGSCYSFSAVGAVEGAYFLTNGELLELSMQEIVDCDDLDG GCQGGEMQQTFKWINGNGGLCLLSDYPYVSGTTAEEQKVCSTCPVVPGTA PESWTTVRRNSMEGLKEAVAGGPVSVAVGASRAWMFYESGVFDGACEGEL NHGVLCVGYGGEEAGEYWKVKNSWGTGWGMDGYILLKRDDGDKEAACGIL QDASFPILPQPSASSSISSLSALPAAVATLVEEKADNSSKEWTAFTSPTQ VQGSATARDCGGGTAVFTSINIIPSSIEKNQLVTVLAEGVLTKPTLSGSY YLSVIYEGAQLYAHSGSACGNETVSLPLNAGIVHVFGFACPVNPGPVEYG LDVTLPSIAPFGGYLISIKGKDQDGADLVCIEAELQL* back to topmRNA from alignment at chr13:214877..217209- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00630.1 ID=NO13G00630.1|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at chr13:214877..217209- (Nannochloropsis oceanica) AACACAGCGACCATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGC
CACCACCGCCCTATCCACGACGACTACGACCACCCCCAGCACCTTCGACA
ATGAGAATCCGTCATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATG
GAGCACCACAACATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAG
CGTCTTTGCCGCCAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGC
ATCCCCGGCCTTCGTACACCTTGGGACACAACCGCTTTTCTCACTTGACC
TTTGAAGAGTTCCGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGC
AGTCCCTCCCTCCTTCCAGCCCGCCTTCAACGACGATATGATCACCACCA
CCACCTCCACCGCCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAAT
GACACCAAGAACGAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTC
CTACATCTTCCCCTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTC
CCACCGACGACCCCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGG
GTATCCAAAGGGGCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTC
CTGCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCA
CCAATGGTGAATTGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGAT
GATTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATG
GATTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCA
GTGGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTC
CCAGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGA
GGGTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTG
CGTCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGC
GAGGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGA
AGCAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGA
TGGACGGCTATATCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCG
TGTGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGC
CTCTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCC
TGGTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACC
TCTCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGG
CACTGCTGTCTTCACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAA
ACCAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTG
AGCGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGC
TCATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATG
CAGGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCG
GTGGAATATGGCTTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGG
GTACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTT
GCATTGAGGCGGAGCTACAGTTGTGAGGAGGAGGGAGGGAGATAGAAAGG
GAGAGATGAGAGCGTTTGTGACCCACGATGGACTTGCGTATGTGCGCTTT
GTCTCCCGATGCATTCTCAGTGAATATTTTAAACAGTATTTTACGTCATT
ATTCGAAAAGATCATACAAAGGGTGGAGTGCAGGAGATTTTGGGGGGGAA
GGAGGGAGAGAGGAAACGGGGGGTTGTACAGGGGTTGGAGCGCTTGTCCT
CAAAAACATTAAAATATTAAGGCACGAAAAAGTACGAAAGGCTATGGGAA
ATGAACAGATTGACAGAGAGAAGGAGAGCGAAAAAAGAGAGAGTAAAGAC
ACCTACAAAATACTGATGGATGTACAGGTGAGGAAAGGGAAGAAAGGAGG
CTGGGTTTGGGGGAGGTATGAATATGAGCCATAATTACCCAACATACCTA
CGACCACTAGAAGAGGAATTGGATGTCGCATAAGTAGGCGGCCTACCACT
TTATTTCTTGGGCCAAAAGAAAGAAGAAAAAAATAGTCCATTAGACCGTC
CTGTGGTAGCAATGGGCCGAACCCTGGACATTT back to topCoding sequence (CDS) from alignment at chr13:214877..217209- >NO13G00630.1 ID=NO13G00630.1|Name=NO13G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr13:214877..217209- (Nannochloropsis oceanica) ATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGCCACCACCGCCCT ATCCACGACGACTACGACCACCCCCAGCACCTTCGACAATGAGAATCCGT CATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATGGAGCACCACAAC ATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAGCGTCTTTGCCGC CAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGCATCCCCGGCCTT CGTACACCTTGGGACACAACCGCTTTTCTCACTTGACCTTTGAAGAGTTC CGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGCAGTCCCTCCCTC CTTCCAGCCCGCCTTCAACGACGATATGATCACCACCACCACCTCCACCG CCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAATGACACCAAGAAC GAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTCCTACATCTTCCC CTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTCCCACCGACGACC CCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGGGTATCCAAAGGG GCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTCCTGCTACTCGTT TTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCACCAATGGTGAAT TGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGATGATTTGGACGGA GGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATGGATTAATGGCAA CGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCAGTGGTACGACTG CGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTCCCAGGCACGGCC CCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGAGGGTTTGAAGGA GGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTGCGTCACGAGCGT GGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGCGAGGGGGAGTTG AACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGAAGCAGGGGAGTA CTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGATGGACGGCTATA TCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCGTGTGGAATTCTG CAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGCCTCTTCCTCCAT CTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCCTGGTCGAGGAAA AGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACCTCTCCAACCCAA GTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGGCACTGCTGTCTT CACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAAACCAACTCGTCA CGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTGAGCGGGAGCTAC TATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGCTCATTCGGGGAG TGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATGCAGGGATTGTTC ACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCGGTGGAATATGGC TTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGGGTACCTGATCTC AATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTTGCATTGAGGCGG AGCTACAGTTGTGA back to top
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